Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc29.32 Carica papaya HOM05D003389 ORTHO05D003917 0.0e+00 1103.2 589 100.0
COL.COLO4_23793 Corchorus olitorius HOM05D003389 ORTHO05D003917 9.9e-144 514.6 551 57.4
Atru.chr9.1507 Acer truncatum HOM05D003389 ORTHO05D003917 6.0e-141 505.4 560 56.2
Thecc.03G268500 Theobroma cacao HOM05D003389 ORTHO05D003917 6.0e-141 505.4 552 57.4
Manes.01G069600 Manihot esculenta HOM05D003389 ORTHO05D003917 8.7e-140 501.5 563 56.0
Gohir.A08G177400 Gossypium hirsutum HOM05D003389 ORTHO05D003917 1.9e-139 500.4 552 55.4
Duzib068G0926 Durio zibethinus HOM05D003389 ORTHO05D003917 3.3e-139 499.6 552 56.0
Gorai.004G206500 Gossypium raimondii HOM05D003389 ORTHO05D003917 9.6e-139 498.0 553 56.8
Gohir.D08G195800 Gossypium hirsutum HOM05D003389 ORTHO05D003917 1.3e-138 497.7 554 55.2
QL12p016621 Quercus lobata HOM05D003389 ORTHO05D003917 1.3e-138 497.7 551 55.5
Ciclev10019075m.g Citrus clementina HOM05D003389 ORTHO05D003917 1.6e-138 497.3 553 55.7
Dinv37703 Davidia involucrata HOM05D003389 ORTHO05D003917 3.7e-138 496.1 564 53.4
Duzib205G0992 Durio zibethinus HOM05D003389 ORTHO05D003917 5.3e-137 492.3 551 56.1
Manes.02G030300 Manihot esculenta HOM05D003389 ORTHO05D003917 2.0e-136 490.3 567 55.0
Duzib084G0706 Durio zibethinus HOM05D003389 ORTHO05D003917 5.8e-136 488.8 551 56.4
Cfa012079 Carpinus fangiana HOM05D003389 ORTHO05D003917 1.3e-135 487.6 552 54.0
Sabra01G0085800 Salix brachista HOM05D003389 ORTHO05D003917 1.4e-134 484.2 579 53.0
Haze_08980 Corylus avellana HOM05D003389 ORTHO05D003917 2.3e-132 476.9 551 53.0
Potri.001G112300 Populus trichocarpa HOM05D003389 ORTHO05D003917 1.9e-131 473.8 567 54.0
CSS0044016 Camellia sinensis var. sinensis HOM05D003389 ORTHO05D003917 2.5e-131 473.4 557 52.2
CiPaw.11G142600 Carya illinoinensis HOM05D003389 ORTHO05D003917 3.3e-131 473.0 567 51.5
Dinv39033 Davidia involucrata HOM05D003389 ORTHO05D003917 1.3e-130 471.1 569 51.8
TAR636G0614 Trochodendron aralioides HOM05D003389 ORTHO05D003917 3.4e-128 463.0 575 50.3
Lj2g0004762 Lotus japonicus HOM05D003389 ORTHO05D003917 1.0e-127 461.5 556 51.3
CiPaw.12G100200 Carya illinoinensis HOM05D003389 ORTHO05D003917 1.7e-127 460.7 551 51.7
Potri.003G119800 Populus trichocarpa HOM05D003389 ORTHO05D003917 5.0e-127 459.1 566 52.5
GSVIVG01019881001 Vitis vinifera HOM05D003389 ORTHO05D003917 8.5e-127 458.4 549 54.6
VMungo1215G1985 Vigna mungo HOM05D003389 ORTHO05D003917 1.4e-126 457.6 553 53.2
Actinidia05234 Actinidia chinensis HOM05D003389 ORTHO05D003917 2.5e-126 456.8 557 51.5
Gorai.006G210500 Gossypium raimondii HOM05D003389 ORTHO05D003917 3.2e-126 456.4 551 53.9
Glyma.01G214700 Glycine max HOM05D003389 ORTHO05D003917 2.7e-125 453.4 558 53.0
Phvul.002G153200 Phaseolus vulgaris HOM05D003389 ORTHO05D003917 6.1e-125 452.2 563 51.9
arahy.Tifrunner.gnm1.ann1.18T4MA Arachis hypogaea HOM05D003389 ORTHO05D003917 1.0e-124 451.4 557 52.8
arahy.Tifrunner.gnm1.ann1.HGX6IC Arachis hypogaea HOM05D003389 ORTHO05D003917 1.0e-124 451.4 556 52.5
Gohir.D09G187700 Gossypium hirsutum HOM05D003389 ORTHO05D003917 1.4e-124 451.1 551 53.7
FAN13G0159 Fragaria x ananassa HOM05D003389 ORTHO05D003917 1.8e-124 450.7 562 52.3
Medtr5g011090 Medicago truncatula HOM05D003389 ORTHO05D003917 2.3e-124 450.3 556 50.7
Gohir.A09G193500 Gossypium hirsutum HOM05D003389 ORTHO05D003917 1.1e-123 448.0 557 52.2
Sabra03G0084000 Salix brachista HOM05D003389 ORTHO05D003917 1.1e-123 448.0 564 51.6
CANSAT21G1884 Cannabis sativa HOM05D003389 ORTHO05D003917 1.5e-123 447.6 566 50.4
MD06G1071200 Malus domestica HOM05D003389 ORTHO05D003917 1.3e-122 444.5 566 50.9
Psat2g181120 Pisum sativum HOM05D003389 ORTHO05D003917 2.2e-122 443.7 552 51.1
ClCG01G003270 Citrullus lanatus HOM05D003389 ORTHO05D003917 4.8e-122 442.6 554 51.3
Sc07g0009480 Simmondsia chinensis HOM05D003389 ORTHO05D003917 6.3e-122 442.2 555 51.7
MD04G1069800 Malus domestica HOM05D003389 ORTHO05D003917 1.1e-121 441.4 579 48.4
Ca_06667_v3 Cicer arietinum L. HOM05D003389 ORTHO05D003917 5.3e-121 439.1 552 51.6
FAN04G3242 Fragaria x ananassa HOM05D003389 ORTHO05D003917 9.1e-121 438.3 562 50.4
CsaV3_5G003350 Cucumis sativus L. HOM05D003389 ORTHO05D003917 1.2e-120 438.0 551 48.8
Nn1g01292 Nelumbo nucifera HOM05D003389 ORTHO05D003917 1.5e-120 437.6 560 50.4
TWI81G0612 Tripterygium wilfordii HOM05D003389 ORTHO05D003917 1.5e-120 437.6 564 49.3
TWI15G1193 Tripterygium wilfordii HOM05D003389 ORTHO05D003917 2.0e-120 437.2 553 50.5
FAN08G2451 Fragaria x ananassa HOM05D003389 ORTHO05D003917 3.4e-120 436.4 563 51.3
Sed0009929 Sechium edule HOM05D003389 ORTHO05D003917 1.0e-119 434.9 551 49.0
RcHm_v2.0_Chr7g0199771 Rosa chinensis HOM05D003389 ORTHO05D003917 4.2e-118 429.5 563 51.3
MELO3C005619.2 Cucumis melo HOM05D003389 ORTHO05D003917 5.5e-118 429.1 567 48.9
Gohir.A11G021100 Gossypium hirsutum HOM05D003389 ORTHO05D003917 7.9e-117 425.2 526 51.5
vmacro00214 Vaccinium macrocarpon HOM05D003389 ORTHO05D003917 1.8e-116 424.1 575 50.3
FvH4_5g01250 Fragaria vesca HOM05D003389 ORTHO05D003917 3.0e-116 423.3 561 48.7
Sed0023838 Sechium edule HOM05D003389 ORTHO05D003917 3.9e-116 422.9 553 47.9
FAN18G0817 Fragaria x ananassa HOM05D003389 ORTHO05D003917 8.8e-116 421.8 561 48.7
TAR636G1874 Trochodendron aralioides HOM05D003389 ORTHO05D003917 1.1e-115 421.4 524 51.0
Nn6g34315 Nelumbo nucifera HOM05D003389 ORTHO05D003917 2.0e-115 420.6 559 48.7
Glyma.11G027200 Glycine max HOM05D003389 ORTHO05D003917 2.2e-114 417.2 556 50.7
PGR031G2775 Punica granatum HOM05D003389 ORTHO05D003917 6.3e-114 415.6 557 49.2
Gorai.007G022100 Gossypium raimondii HOM05D003389 ORTHO05D003917 4.1e-113 412.9 528 51.7
Lalb_Chr09g0324691 Lupinus albus HOM05D003389 ORTHO05D003917 9.1e-113 411.8 555 47.9
Eucgr.D01938 Eucalyptus grandis HOM05D003389 ORTHO05D003917 8.5e-111 405.2 552 48.9
Rhsim11G0008000 Rhododendron simsii HOM05D003389 ORTHO05D003917 8.5e-111 405.2 574 48.1
Cc08_g13790 Coffea canephora HOM05D003389 ORTHO05D003917 1.9e-110 404.1 566 47.0
CSS0021110 Camellia sinensis var. sinensis HOM05D003389 ORTHO05D003917 4.2e-110 402.9 574 46.9
TPR.G19581 Trifolium pratense HOM05D003389 ORTHO05D003917 7.2e-110 402.1 553 49.4
Oeu001902.1 Olea europaea HOM05D003389 ORTHO05D003917 8.0e-109 398.7 558 46.1
MBI11_g05095_MAGBIO Magnolia biondii HOM05D003389 ORTHO05D003917 3.0e-108 396.7 568 47.2
Lj2C201G3 Lonicera japonica HOM05D003389 ORTHO05D003917 1.7e-106 391.0 563 45.8
Prupe.5G088000 Prunus persica HOM05D003389 ORTHO05D003917 6.3e-106 389.0 495 50.1
Nitab4.5_0008362g0010 Nicotiana tabacum HOM05D003389 ORTHO05D003917 2.4e-105 387.1 557 46.7
THA.LOC104806361 Tarenaya hassleriana HOM05D003389 ORTHO05D003917 1.2e-104 384.8 558 48.2
Aqoxy5G03952 Aquilegia oxysepala HOM05D003389 ORTHO05D003917 7.7e-104 382.1 570 42.5
EL10Ac5g12710 Beta vulgaris HOM05D003389 ORTHO05D003917 2.2e-103 380.6 564 45.7
Lj2C200G2 Lonicera japonica HOM05D003389 ORTHO05D003917 3.2e-102 376.7 525 46.3
Peaxi162Scf00620g00617 Petunia axillaris HOM05D003389 ORTHO05D003917 5.5e-102 375.9 566 44.5
THA.LOC104814202 Tarenaya hassleriana HOM05D003389 ORTHO05D003917 5.5e-102 375.9 551 47.5
CAN.G981.56 Capsicum annuum HOM05D003389 ORTHO05D003917 6.1e-101 372.5 554 45.3
Thhalv10028490m.g Eutrema salsugineum HOM05D003389 ORTHO05D003917 8.0e-101 372.1 552 44.7
SGA_v2.0_scaffold144G35980 Striga asiatica HOM05D003389 ORTHO05D003917 1.4e-100 371.3 563 46.5
Actinidia14499 Actinidia chinensis HOM05D003389 ORTHO05D003917 4.0e-100 369.8 559 44.7
AT4G11860 Arabidopsis thaliana HOM05D003389 ORTHO05D003917 5.2e-100 369.4 556 44.2
DCAR_006771 Daucus carota HOM05D000526 ORTHO05D003917 1.5e-99 367.9 581 42.7
ECA233G2019 Erigeron canadensis HOM05D003389 ORTHO05D003917 1.5e-99 367.9 556 43.2
Ah.12g057800 Amaranthus hybridus HOM05D003389 ORTHO05D003917 3.3e-99 366.7 555 46.7
DCAR_008431 Daucus carota HOM05D003389 ORTHO05D003917 4.4e-99 366.3 575 43.8
Sp6g05610 Schrenkiella parvula HOM05D003389 ORTHO05D003917 5.7e-99 365.9 556 45.7
Carub.0006s3095 Capsella rubella HOM05D003389 ORTHO05D003917 2.8e-98 363.6 561 44.2
CARHR254440 Cardamine hirsuta HOM05D003389 ORTHO05D003917 3.7e-98 363.2 565 44.2
Gohir.D11G020800 Gossypium hirsutum HOM05D003389 ORTHO05D003917 4.8e-98 362.8 511 48.7
Sopen08g028470 Solanum pennellii HOM05D003389 ORTHO05D003917 1.1e-97 361.7 560 43.9
Hund11535 Selenicereus undatus HOM05D003389 ORTHO05D003917 2.0e-96 357.5 561 44.9
Migut.E01161 Erythranthe guttata HOM05D003389 ORTHO05D003917 1.0e-95 355.1 558 43.7
Aa31LG9G10590 Aethionema arabicum HOM05D003389 ORTHO05D003917 1.7e-95 354.4 567 45.0
A09p27250 Brassica napus HOM05D003389 ORTHO05D003917 2.2e-95 354.0 555 45.4
Lsat_1_v5_gn_6_10400 Lactuca sativa HOM05D003389 ORTHO05D003917 2.2e-95 354.0 556 47.5
PGSC0003DMG400022735 Solanum tuberosum HOM05D003389 ORTHO05D003917 2.9e-95 353.6 567 43.2
SGA_v2.0_scaffold286G47125 Striga asiatica HOM05D003389 ORTHO05D003917 2.9e-95 353.6 559 44.2
unitig_699.g19759 Utricularia gibba HOM05D003389 ORTHO05D003917 2.9e-95 353.6 553 43.8
PSO782G1906 Papaver somniferum HOM05D003389 ORTHO05D003917 6.5e-95 352.4 568 42.6
BcaB01g01683 Brassica carinata HOM05D003389 ORTHO05D003917 9.4e-94 348.6 553 43.9
CDE12G0302 Ceratophyllum demersum HOM05D003389 ORTHO05D003917 1.2e-93 348.2 559 42.6
BraA09t38293Z Brassica rapa HOM05D003389 ORTHO05D003917 2.1e-93 347.4 555 44.0
SalBow6G3358 Salvia bowleyana HOM05D003389 ORTHO05D003917 4.7e-93 346.3 493 44.8
PSO478G1498 Papaver somniferum HOM05D003389 ORTHO05D003917 6.1e-93 345.9 563 41.7
BcaC04g21168 Brassica carinata HOM05D003389 ORTHO05D003917 1.4e-92 344.7 555 44.9
C09p34580 Brassica napus HOM05D003389 ORTHO05D003917 1.4e-92 344.7 555 44.9
BolC9t56305H Brassica oleracea HOM05D003389 ORTHO05D003917 1.4e-92 344.7 555 44.9
Nitab4.5_0001714g0090 Nicotiana tabacum HOM05D003389 ORTHO05D003917 6.3e-90 335.9 577 42.5
Hma1.2p1_0138F.1_g062730 Hydrangea macrophylla HOM05D003389 ORTHO05D003917 3.1e-89 333.6 569 42.5
HanXRQChr11g0336621 Helianthus annuus HOM05D003389 ORTHO05D003917 4.1e-89 333.2 558 43.0
SalBow1G6995 Salvia bowleyana HOM05D003262 ORTHO05D003917 5.4e-89 332.8 526 43.7
AUR62010575 Chenopodium quinoa HOM05D003389 ORTHO05D003917 7.7e-88 328.9 493 44.8
Lj8A241G19 Lonicera japonica HOM05D003389 ORTHO05D003917 2.3e-87 327.4 555 41.4
ATR0661G488 Amborella trichopoda HOM05D003389 ORTHO05D003917 6.8e-84 315.8 579 40.2
CDE04G0877 Ceratophyllum demersum HOM05D003389 ORTHO05D003917 9.8e-83 312.0 559 40.1
FAN09G1540 Fragaria x ananassa HOM05D003389 ORTHO05D003917 4.9e-82 309.7 483 44.1
FAN09G4798 Fragaria x ananassa HOM05D003389 ORTHO05D003917 8.6e-79 298.9 503 42.3
SEGI_34401 Sequoiadendron giganteum HOM05D003389 ORTHO05D003917 5.2e-76 289.7 588 38.4
HPP92_022000 Vanilla planifolia HOM05D003389 ORTHO05D003917 5.2e-76 289.7 576 38.2
SHI13491 Sapria himalayana HOM05D003389 ORTHO05D003917 1.5e-75 288.1 575 38.8
Os06g0712400 Oryza sativa ssp. japonica HOM05D003389 ORTHO05D003917 4.4e-75 286.6 540 39.8
FAN09G0964 Fragaria x ananassa HOM05D003389 ORTHO05D003917 1.4e-73 281.6 523 40.7
ECA240G1577 Erigeron canadensis HOM05D003389 ORTHO05D003917 2.3e-71 274.2 536 39.0
Zm00001eb227790 Zea mays HOM05D003389 ORTHO05D003917 4.9e-66 256.5 519 37.4
Lalb_Chr05g0214741 Lupinus albus HOM05D003389 ORTHO05D003917 6.0e-64 249.6 179 67.0
Hund14708 Selenicereus undatus HOM05D003389 ORTHO05D003917 2.5e-62 244.2 508 39.0
AUR62017315 Chenopodium quinoa HOM05D003389 ORTHO05D003917 1.2e-61 241.9 521 38.0
TAR636G1472 Trochodendron aralioides HOM05D003389 ORTHO05D003917 1.4e-60 238.4 521 35.7
BraA01t01370Z Brassica rapa HOM05D003389 ORTHO05D003917 5.8e-59 233.0 529 33.8
BcaC09g51049 Brassica carinata HOM05D003389 ORTHO05D003917 1.3e-58 231.9 546 34.1
BolC1t01690H Brassica oleracea HOM05D003389 ORTHO05D003917 1.3e-58 231.9 546 34.1
A01p14230 Brassica napus HOM05D003389 ORTHO05D003917 2.2e-58 231.1 530 34.0
C01p17500 Brassica napus HOM05D003389 ORTHO05D003917 1.9e-57 228.0 530 34.2
RcHm_v2.0_Chr1g0379891 Rosa chinensis HOM05D003389 ORTHO05D003917 9.2e-57 225.7 175 70.3
Mapoly0108s0010 Marchantia polymorpha HOM05D003389 ORTHO05D003917 7.8e-56 222.6 639 31.9
SMO367G0360 Selaginella moellendorffii HOM05D003389 ORTHO05D003917 1.1e-54 218.8 534 35.8
Zm00001eb272510 Zea mays HOM05D003389 ORTHO05D003917 5.6e-54 216.5 245 49.4
BcaNung01008 Brassica carinata HOM05D003389 ORTHO05D003917 9.9e-51 205.7 511 33.7
Lalb_Chr16g0379951 Lupinus albus HOM05D003389 ORTHO05D003917 3.5e-48 197.2 416 38.0
Migut.A00905 Erythranthe guttata HOM05D003389 ORTHO05D003917 8.7e-47 192.6 231 47.6
Aa31LG6G5010 Aethionema arabicum HOM05D003389 ORTHO05D003917 1.9e-46 191.4 531 32.4
Migut.A00906 Erythranthe guttata HOM05D003389 ORTHO05D003917 7.3e-46 189.5 560 31.2
Sp7g21050 Schrenkiella parvula HOM05D003389 ORTHO05D003917 2.8e-45 187.6 500 32.2
Pp3c17_3230 Physcomitrium patens HOM05D003389 ORTHO05D003917 6.2e-45 186.4 613 32.5
AL7G30560 Arabidopsis lyrata HOM05D003389 ORTHO05D003917 2.1e-40 171.4 527 28.1
Thhalv10027519m.g Eutrema salsugineum HOM05D003389 ORTHO05D003917 1.1e-38 165.6 550 30.7
AagrBONN_evm.TU.Sc2ySwM_228.3893 Anthoceros agrestis HOM05D003389 ORTHO05D003917 1.9e-38 164.9 593 29.8
Pp3c12_2860 Physcomitrium patens HOM05D003389 ORTHO05D003917 9.6e-38 162.5 613 30.2
PSO170G2389 Papaver somniferum HOM05D003389 ORTHO05D003917 1.5e-35 155.2 276 37.0
PSO302G0081 Papaver somniferum HOM05D003389 ORTHO05D003917 2.0e-35 154.8 196 43.9
Carub.0007s1831 Capsella rubella HOM05D003389 ORTHO05D003917 3.8e-34 150.6 151 51.7
CBR_g38139 Chara braunii HOM05D003389 ORTHO05D003917 3.5e-32 144.1 157 52.2
Lsat_1_v5_gn_6_79100 Lactuca sativa HOM05D003389 ORTHO05D003917 3.5e-32 144.1 123 61.8
VMungo1383G1658 Vigna mungo HOM05D003389 ORTHO05D003917 1.8e-31 141.7 174 49.4
Glyma.03G265002 Glycine max HOM05D003389 ORTHO05D003917 8.7e-31 139.4 196 47.4
Eucgr.D01936 Eucalyptus grandis HOM05D003389 ORTHO05D003917 1.1e-30 139.0 113 59.3
Glyma.11G000066 Glycine max HOM05D003389 ORTHO05D003917 2.5e-30 137.9 173 49.1
HanXRQChr02g0043491 Helianthus annuus HOM05D003389 ORTHO05D003917 5.6e-30 136.7 128 50.0
MBI04_g06622_MAGBIO Magnolia biondii HOM05D003389 ORTHO05D003917 1.0e-26 125.9 121 53.7
HanXRQChr02g0043501 Helianthus annuus HOM05D003389 ORTHO05D003917 4.9e-26 123.6 79 68.4
Glyma.04G257602 Glycine max HOM05D003389 ORTHO05D003917 9.3e-25 119.4 115 63.5
AT4G22960 Arabidopsis thaliana HOM05D003389 ORTHO05D003917 4.6e-24 117.1 158 38.6
Glyma.11G000132 Glycine max HOM05D003389 ORTHO05D003917 1.0e-23 115.9 115 62.6
Glyma.03G264902 Glycine max HOM05D003389 ORTHO05D003917 1.1e-22 112.5 115 61.7
Actinidia27413 Actinidia chinensis HOM05D003389 ORTHO05D003917 7.4e-22 109.8 85 70.6
Eucgr.D01937 Eucalyptus grandis HOM05D003389 ORTHO05D003917 3.7e-21 107.5 156 41.7
Cre06.g304850 Chlamydomonas reinhardtii HOM05D003389 ORTHO05D003917 4.5e-19 100.5 89 56.2
DCAR_022883 Daucus carota HOM05D064377 ORTHO05D003917 3.8e-18 97.4 127 42.5
AagrBONN_evm.TU.Sc2ySwM_362.1756 Anthoceros agrestis HOM05D003389 ORTHO05D003917 2.5e-17 94.7 97 47.4
PRCOL_00006333 Prasinoderma coloniale HOM05D003389 ORTHO05D003917 1.8e-15 88.6 172 35.5
BraA03t14599Z Brassica rapa HOM05D003389 ORTHO05D003917 8.7e-15 86.3 75 56.0
BcaB01g02667 Brassica carinata HOM05D003389 ORTHO05D003917 1.1e-14 85.9 69 63.8
MCO06G239 Micromonas commoda HOM05D003389 ORTHO05D003917 9.7e-14 82.8 247 33.2
Aqoxy1G01439 Aquilegia oxysepala HOM05D001108 ORTHO05D001619 7.9e-08 63.2 107 34.6
Cfa025567 Carpinus fangiana HOM05D003389 ORTHO05D003917 7.9e-08 63.2 116 32.8
Os06g0721600 Oryza sativa ssp. japonica HOM05D003389 ORTHO05D020930 1.0e-07 62.8 79 34.2
Os06g0723400 Oryza sativa ssp. japonica HOM05D003389 ORTHO05D020930 1.0e-07 62.8 79 34.2
Oeu059050.1 Olea europaea HOM05D003389 ORTHO05D003917 8.8e-07 59.7 83 42.2
MBI09_g41969_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 5.7e-06 57.0 41 58.5
MBI18_g34832_MAGBIO Magnolia biondii HOM05D003389 ORTHO05D003917 9.7e-06 56.2 104 38.5


User provided reference genes

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