Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc29.153 Carica papaya HOM05D005354 ORTHO05D006315 4.8e-100 367.9 188 100.0
Dinv21636 Davidia involucrata HOM05D005354 ORTHO05D006315 8.8e-78 293.9 188 76.6
TWI81G0349 Tripterygium wilfordii HOM05D005354 ORTHO05D006315 2.8e-76 288.9 188 75.0
RcHm_v2.0_Chr7g0203181 Rosa chinensis HOM05D005354 ORTHO05D006315 3.1e-75 285.4 188 75.0
Actinidia27464 Actinidia chinensis HOM05D005354 ORTHO05D006315 9.1e-75 283.9 188 73.9
GSVIVG01001321001 Vitis vinifera HOM05D005354 ORTHO05D006315 1.2e-74 283.5 188 76.1
Rhsim07G0108200 Rhododendron simsii HOM05D005354 ORTHO05D006315 1.6e-74 283.1 188 74.5
TWI60G0726 Tripterygium wilfordii HOM05D005354 ORTHO05D006315 2.7e-74 282.3 188 73.9
Gohir.D03G162600 Gossypium hirsutum HOM05D005354 ORTHO05D006315 3.5e-74 282.0 188 75.0
Lj2A217G28 Lonicera japonica HOM05D005354 ORTHO05D006315 4.5e-74 281.6 188 73.9
Dinv39144 Davidia involucrata HOM05D005354 ORTHO05D006315 5.9e-74 281.2 188 73.9
Gorai.003G171200 Gossypium raimondii HOM05D005354 ORTHO05D006315 7.7e-74 280.8 188 74.5
vmacro14088 Vaccinium macrocarpon HOM05D005354 ORTHO05D006315 7.7e-74 280.8 185 76.8
QL12p012213 Quercus lobata HOM05D005354 ORTHO05D006315 1.0e-73 280.4 183 74.9
Peaxi162Scf00174g00027 Petunia axillaris HOM05D005354 ORTHO05D006315 1.3e-73 280.0 188 73.9
Ciclev10019626m.g Citrus clementina HOM05D005354 ORTHO05D006315 2.2e-73 279.3 188 71.8
MBI04_g09494_MAGBIO Magnolia biondii HOM05D005354 ORTHO05D006315 2.2e-73 279.3 188 73.4
Thecc.03G252000 Theobroma cacao HOM05D005354 ORTHO05D006315 2.2e-73 279.3 188 74.5
ClCG10G002710 Citrullus lanatus HOM05D005354 ORTHO05D006315 2.9e-73 278.9 182 75.8
PGSC0003DMG400004811 Solanum tuberosum HOM05D005354 ORTHO05D006315 2.9e-73 278.9 187 72.2
Sed0003796 Sechium edule HOM05D005354 ORTHO05D006315 6.5e-73 277.7 182 75.3
Potri.001G158200 Populus trichocarpa HOM05D005354 ORTHO05D006315 8.5e-73 277.3 188 74.5
Gohir.A03G008300 Gossypium hirsutum HOM05D005354 ORTHO05D006315 1.1e-72 276.9 188 73.9
Solyc08g078660.3 Solanum lycopersicum HOM05D005354 ORTHO05D006315 1.9e-72 276.2 188 70.7
Sopen08g027140 Solanum pennellii HOM05D005354 ORTHO05D006315 2.5e-72 275.8 188 70.7
CsaV3_3G002740 Cucumis sativus L. HOM05D005354 ORTHO05D006315 3.2e-72 275.4 182 73.6
FAN08G0881 Fragaria x ananassa HOM05D005354 ORTHO05D006315 3.2e-72 275.4 188 72.9
Nitab4.5_0007598g0020 Nicotiana tabacum HOM05D005354 ORTHO05D006315 3.2e-72 275.4 188 72.3
FAN04G2371 Fragaria x ananassa HOM05D005354 ORTHO05D006315 4.2e-72 275.0 188 72.9
Nitab4.5_0000312g0100 Nicotiana tabacum HOM05D005354 ORTHO05D006315 4.2e-72 275.0 188 71.8
Atru.chr9.1319 Acer truncatum HOM05D005354 ORTHO05D006315 5.5e-72 274.6 186 74.2
CAN.G1367.6 Capsicum annuum HOM05D005354 ORTHO05D006315 7.2e-72 274.2 188 71.3
FvH4_5g18830 Fragaria vesca HOM05D005354 ORTHO05D006315 1.2e-71 273.5 188 72.3
CANSAT21G0216 Cannabis sativa HOM05D005354 ORTHO05D006315 1.6e-71 273.1 189 74.1
Prupe.5G069200 Prunus persica HOM05D005354 ORTHO05D006315 2.1e-71 272.7 188 72.9
Eucgr.E00426 Eucalyptus grandis HOM05D005354 ORTHO05D006315 3.6e-71 271.9 188 73.9
Manes.01G080300 Manihot esculenta HOM05D005354 ORTHO05D006315 3.6e-71 271.9 188 75.0
FAN13G0823 Fragaria x ananassa HOM05D005354 ORTHO05D006315 4.7e-71 271.6 188 72.3
CiPaw.11G153900 Carya illinoinensis HOM05D005354 ORTHO05D006315 8.0e-71 270.8 188 70.2
MD06G1057900 Malus domestica HOM05D005354 ORTHO05D006315 1.0e-70 270.4 188 71.3
Sc01g0008460 Simmondsia chinensis HOM05D005354 ORTHO05D006315 1.8e-70 269.6 188 70.2
Aa31LG9G12210 Aethionema arabicum HOM05D000808 ORTHO05D006315 2.3e-70 269.2 187 69.5
Manes.02G039200 Manihot esculenta HOM05D005354 ORTHO05D006315 2.3e-70 269.2 188 73.4
FAN18G0938 Fragaria x ananassa HOM05D005354 ORTHO05D006315 3.0e-70 268.9 189 72.0
FAN18G2353 Fragaria x ananassa HOM05D005354 ORTHO05D006315 3.0e-70 268.9 189 72.0
Cc08_g12480 Coffea canephora HOM05D005354 ORTHO05D006315 8.8e-70 267.3 188 68.1
Oeu040216.1 Olea europaea HOM05D005354 ORTHO05D006315 8.8e-70 267.3 188 68.6
Haze_07917 Corylus avellana HOM05D005354 ORTHO05D006315 1.2e-69 266.9 184 70.7
Potri.003G076600 Populus trichocarpa HOM05D005354 ORTHO05D006315 1.5e-69 266.5 181 74.6
Nn1g01007 Nelumbo nucifera HOM05D005354 ORTHO05D006315 2.6e-69 265.8 183 72.1
MSTRG.25527 Avicennia marina HOM05D005354 ORTHO05D006315 3.4e-69 265.4 187 67.9
COL.COLO4_37182 Corchorus olitorius HOM05D005354 ORTHO05D006315 5.7e-69 264.6 188 69.7
MELO3C013942.2 Cucumis melo HOM05D005354 ORTHO05D006315 7.5e-69 264.2 208 65.9
THA.LOC104815494 Tarenaya hassleriana HOM05D005354 ORTHO05D006315 1.3e-68 263.5 188 73.4
CSS0011263 Camellia sinensis var. sinensis HOM05D005354 ORTHO05D006315 2.2e-68 262.7 188 71.3
PGR042G1820 Punica granatum HOM05D005354 ORTHO05D006315 6.3e-68 261.2 188 68.6
Prupe.5G069100 Prunus persica HOM05D005354 ORTHO05D006315 1.8e-67 259.6 188 71.3
Lsat_1_v5_gn_6_91180 Lactuca sativa HOM05D005354 ORTHO05D006315 4.1e-67 258.5 191 68.1
arahy.Tifrunner.gnm1.ann1.BT71C1 Arachis hypogaea HOM05D005354 ORTHO05D006315 1.2e-66 256.9 188 66.0
arahy.Tifrunner.gnm1.ann1.LCH2QT Arachis hypogaea HOM05D005354 ORTHO05D006315 1.2e-66 256.9 188 66.0
CSS0003507 Camellia sinensis var. sinensis HOM05D005354 ORTHO05D006315 1.6e-66 256.5 173 75.7
CSS0039308 Camellia sinensis var. sinensis HOM05D005354 ORTHO05D006315 1.6e-66 256.5 173 75.7
SGA_v2.0_scaffold54G19448 Striga asiatica HOM05D005354 ORTHO05D006315 1.6e-66 256.5 188 67.0
Aqoxy7G00759 Aquilegia oxysepala HOM05D005354 ORTHO05D006315 3.5e-66 255.4 183 70.5
TAR629G2416 Trochodendron aralioides HOM05D005354 ORTHO05D006315 3.5e-66 255.4 183 67.8
AT2G35720 Arabidopsis thaliana HOM05D005354 ORTHO05D006315 4.5e-66 255.0 183 69.9
ATR0317G109 Amborella trichopoda HOM05D005354 ORTHO05D006315 2.3e-65 252.7 189 67.7
Thhalv10016484m.g Eutrema salsugineum HOM05D005354 ORTHO05D006315 2.9e-65 252.3 183 68.3
Sabra01G0133300 Salix brachista HOM05D005354 ORTHO05D006315 8.6e-65 250.8 234 59.8
EL10Ac5g13072 Beta vulgaris HOM05D005354 ORTHO05D006315 1.1e-64 250.4 188 65.4
AL4G31810 Arabidopsis lyrata HOM05D005354 ORTHO05D006315 1.5e-64 250.0 183 68.3
Sp4g17990 Schrenkiella parvula HOM05D005354 ORTHO05D006315 2.5e-64 249.2 183 67.2
ECA240G4831 Erigeron canadensis HOM05D005354 ORTHO05D006315 3.2e-64 248.8 188 66.0
Phvul.002G062800 Phaseolus vulgaris HOM05D005354 ORTHO05D006315 3.2e-64 248.8 188 64.4
Carub.0004s1745 Capsella rubella HOM05D005354 ORTHO05D006315 4.2e-64 248.4 183 68.3
Lalb_Chr05g0214491 Lupinus albus HOM05D005354 ORTHO05D006315 4.2e-64 248.4 188 63.3
BraA04t18215Z Brassica rapa HOM05D005354 ORTHO05D006315 5.5e-64 248.1 188 64.4
PSO017G6196 Papaver somniferum HOM05D005354 ORTHO05D006315 5.5e-64 248.1 188 67.6
BcaC02g07676 Brassica carinata HOM05D005354 ORTHO05D006315 7.2e-64 247.7 182 65.9
C04p64680 Brassica napus HOM05D005354 ORTHO05D006315 7.2e-64 247.7 182 65.9
BolC4t27945H Brassica oleracea HOM05D005354 ORTHO05D006315 7.2e-64 247.7 182 65.9
HanXRQChr03g0088591 Helianthus annuus HOM05D005354 ORTHO05D006315 2.1e-63 246.1 190 64.7
Glyma.11G032400 Glycine max HOM05D005354 ORTHO05D006315 2.8e-63 245.7 188 63.8
CARHR129960 Cardamine hirsuta HOM05D005354 ORTHO05D006315 3.6e-63 245.4 183 67.8
A04p27170 Brassica napus HOM05D005354 ORTHO05D006315 4.7e-63 245.0 182 64.8
Actinidia05204 Actinidia chinensis HOM05D005354 ORTHO05D006315 8.0e-63 244.2 164 72.0
CDE04G0953 Ceratophyllum demersum HOM05D005354 ORTHO05D006315 8.0e-63 244.2 188 63.8
Ah.02g116720 Amaranthus hybridus HOM05D005354 ORTHO05D006315 1.0e-62 243.8 189 63.5
Lj2g0013106 Lotus japonicus HOM05D005354 ORTHO05D006315 1.0e-62 243.8 182 67.0
Lalb_Chr09g0324401 Lupinus albus HOM05D005354 ORTHO05D006315 1.0e-62 243.8 181 64.6
Migut.E00837 Erythranthe guttata HOM05D005354 ORTHO05D006315 1.4e-62 243.4 190 64.2
BcaB06g28865 Brassica carinata HOM05D005354 ORTHO05D006315 1.8e-62 243.0 182 64.3
PSO170G3683 Papaver somniferum HOM05D005354 ORTHO05D006315 1.8e-62 243.0 188 66.5
Ca_24574_v3 Cicer arietinum L. HOM05D005354 ORTHO05D006315 4.0e-62 241.9 182 67.0
Glyma.01G209800 Glycine max HOM05D005354 ORTHO05D006315 4.0e-62 241.9 181 65.7
Medtr5g012530 Medicago truncatula HOM05D005354 ORTHO05D006315 5.7e-61 238.0 188 64.9
TPR.G25879 Trifolium pratense HOM05D005354 ORTHO05D006315 1.7e-60 236.5 188 64.9
Psat2g177520 Pisum sativum HOM05D005354 ORTHO05D006315 2.2e-60 236.1 188 64.4
VMungo1215G2766 Vigna mungo HOM05D005354 ORTHO05D006315 1.4e-59 233.4 170 67.6
Zm00001eb043970 Zea mays HOM05D005354 ORTHO05D006315 5.4e-59 231.5 183 60.1
HPP92_015106 Vanilla planifolia HOM05D005354 ORTHO05D006315 9.2e-59 230.7 188 60.1
Os10g0507800 Oryza sativa ssp. japonica HOM05D005354 ORTHO05D006315 2.0e-58 229.6 188 59.0
HPP92_015115 Vanilla planifolia HOM05D005354 ORTHO05D006315 5.9e-58 228.0 188 59.0
DCAR_027776 Daucus carota HOM05D005354 ORTHO05D006315 2.0e-53 213.0 156 67.3
AUR62007515 Chenopodium quinoa HOM05D005354 ORTHO05D006315 3.7e-52 208.8 162 64.8
Hund14561 Selenicereus undatus HOM05D005354 ORTHO05D006315 3.2e-51 205.7 188 60.1
SHI35069 Sapria himalayana HOM05D005354 ORTHO05D006315 7.0e-51 204.5 182 56.0
SMO172G0088 Selaginella moellendorffii HOM05D005354 ORTHO05D006315 3.0e-49 199.1 187 53.5
Mapoly0099s0041 Marchantia polymorpha HOM05D005354 ORTHO05D006315 1.9e-48 196.4 191 53.4
Pp3c26_4130 Physcomitrium patens HOM05D005354 ORTHO05D006315 4.3e-48 195.3 194 52.1
AUR62042790 Chenopodium quinoa HOM05D005354 ORTHO05D006315 6.4e-44 181.4 141 63.1
unitig_8.g3913 Utricularia gibba HOM05D005354 ORTHO05D006315 1.2e-42 177.2 188 50.5
Pp3c3_14420 Physcomitrium patens HOM05D005354 ORTHO05D006315 4.6e-42 175.3 194 45.9
HPP92_015035 Vanilla planifolia HOM05D005354 ORTHO05D006315 1.5e-37 160.2 183 48.1
Ca_24575_v3 Cicer arietinum L. HOM05D005354 ORTHO05D006315 1.6e-34 150.2 189 46.6
CDE12G0732 Ceratophyllum demersum HOM05D005354 ORTHO05D006315 7.8e-34 147.9 188 45.7
Duzib084G0473 Durio zibethinus HOM05D005354 ORTHO05D006315 4.7e-31 138.7 188 43.1
AUR62044248 Chenopodium quinoa HOM05D005354 ORTHO05D006315 4.0e-30 135.6 99 68.7
Zm00001eb442450 Zea mays HOM05D005354 ORTHO05D006315 1.3e-25 120.6 83 57.8
SMO172G0123 Selaginella moellendorffii HOM05D005354 ORTHO05D006315 2.3e-25 119.8 107 54.2
CBR_g27963 Chara braunii HOM05D005354 ORTHO05D006315 4.4e-21 105.5 143 42.0
Cc08_g12460 Coffea canephora HOM05D005354 ORTHO05D006315 6.0e-18 95.1 57 68.4
MCO16G272 Micromonas commoda HOM05D005354 ORTHO05D006315 1.5e-13 80.5 183 29.5
PRCOL_00004836 Prasinoderma coloniale HOM05D005354 ORTHO05D006315 1.2e-10 70.9 211 28.9
Zm00001eb442210 Zea mays HOM05D005354 ORTHO05D006315 1.0e-09 67.8 53 64.2


User provided reference genes

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