Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc29.127 Carica papaya HOM05D005270 ORTHO05D006239 7.9e-283 976.5 503 100.0
Thecc.03G257000 Theobroma cacao HOM05D005270 ORTHO05D006239 2.2e-168 596.3 511 65.4
Eucgr.D02030 Eucalyptus grandis HOM05D005270 ORTHO05D006239 2.9e-168 595.9 515 65.0
Duzib068G0557 Durio zibethinus HOM05D005270 ORTHO05D006239 5.5e-167 591.7 509 65.2
Gohir.A03G010000 Gossypium hirsutum HOM05D005270 ORTHO05D006239 3.5e-166 589.0 509 64.4
PGR031G3926 Punica granatum HOM05D005270 ORTHO05D006239 4.6e-166 588.6 510 64.1
Gohir.D03G160700 Gossypium hirsutum HOM05D005270 ORTHO05D006239 2.3e-165 586.3 509 64.4
Atru.chr9.1379_Atru.chr9.1380 Acer truncatum HOM05D005270 ORTHO05D006239 3.9e-165 585.5 506 65.4
CiPaw.11G150400 Carya illinoinensis HOM05D005270 ORTHO05D006239 8.7e-165 584.3 510 64.5
Gorai.006G212700 Gossypium raimondii HOM05D005270 ORTHO05D006239 1.1e-164 583.9 509 64.6
Potri.001G120400 Populus trichocarpa HOM05D005270 ORTHO05D006239 1.9e-164 583.2 506 65.0
Gohir.A09G195500 Gossypium hirsutum HOM05D005270 ORTHO05D006239 4.3e-164 582.0 509 64.6
Sabra01G0092800 Salix brachista HOM05D005270 ORTHO05D006239 4.3e-164 582.0 506 65.0
Gohir.D09G190100 Gossypium hirsutum HOM05D005270 ORTHO05D006239 7.4e-164 581.3 509 64.4
Prupe.5G075500 Prunus persica HOM05D005270 ORTHO05D006239 7.4e-164 581.3 504 64.5
RcHm_v2.0_Chr7g0202331 Rosa chinensis HOM05D005270 ORTHO05D006239 1.3e-163 580.5 504 63.7
CANSAT21G2027 Cannabis sativa HOM05D005270 ORTHO05D006239 1.6e-163 580.1 511 63.8
QL12p013868 Quercus lobata HOM05D005270 ORTHO05D006239 2.1e-163 579.7 509 64.2
Ciclev10020501m.g Citrus clementina HOM05D005270 ORTHO05D006239 8.2e-163 577.8 509 63.7
MD06G1067000 Malus domestica HOM05D005270 ORTHO05D006239 1.1e-162 577.4 504 63.7
FvH4_5g00280 Fragaria vesca HOM05D005270 ORTHO05D006239 2.6e-161 572.8 506 63.8
Manes.01G076600 Manihot esculenta HOM05D005270 ORTHO05D006239 2.6e-161 572.8 510 63.7
FAN04G3018 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.0e-160 570.9 511 63.6
TWI81G0718 Tripterygium wilfordii HOM05D005270 ORTHO05D006239 1.3e-160 570.5 508 64.0
FAN18G1040 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.7e-160 570.1 504 63.5
FAN08G1405 Fragaria x ananassa HOM05D005270 ORTHO05D006239 3.8e-160 568.9 506 63.4
FAN13G2928 Fragaria x ananassa HOM05D005270 ORTHO05D006239 8.5e-160 567.8 506 63.4
Dinv21601 Davidia involucrata HOM05D005270 ORTHO05D006239 1.9e-159 566.6 509 61.7
GSVIVG01004774001 Vitis vinifera HOM05D005270 ORTHO05D006239 4.6e-158 562.0 509 61.9
Actinidia27450 Actinidia chinensis HOM05D005270 ORTHO05D006239 8.7e-157 557.8 509 60.5
GSVIVG01001274001 Vitis vinifera HOM05D005270 ORTHO05D006239 1.1e-156 557.4 509 61.7
Actinidia05188 Actinidia chinensis HOM05D005270 ORTHO05D006239 1.5e-156 557.0 509 60.9
CSS0023019 Camellia sinensis var. sinensis HOM05D005270 ORTHO05D006239 1.9e-156 556.6 509 61.9
CSS0046114 Camellia sinensis var. sinensis HOM05D005270 ORTHO05D006239 1.9e-156 556.6 509 61.9
ClCG01G003850 Citrullus lanatus HOM05D005270 ORTHO05D006239 1.9e-156 556.6 510 62.0
Sed0019529 Sechium edule HOM05D005270 ORTHO05D006239 7.4e-156 554.7 507 61.9
Hma1.2p1_1414F.1_g281890 Hydrangea macrophylla HOM05D005270 ORTHO05D006239 6.3e-155 551.6 509 59.9
MELO3C005559.2 Cucumis melo HOM05D005270 ORTHO05D006239 1.4e-154 550.4 510 60.6
Lj2A211T58 Lonicera japonica HOM05D005270 ORTHO05D006239 4.1e-154 548.9 509 60.3
arahy.Tifrunner.gnm1.ann1.9F7ELE Arachis hypogaea HOM05D005270 ORTHO05D006239 5.3e-154 548.5 507 61.1
Carub.0001s1190 Capsella rubella HOM05D005270 ORTHO05D006239 5.3e-154 548.5 519 59.7
PGSC0003DMG400004791 Solanum tuberosum HOM05D005270 ORTHO05D006239 2.6e-153 546.2 509 59.5
Lalb_Chr05g0225581 Lupinus albus HOM05D005270 ORTHO05D006239 3.4e-153 545.8 511 61.6
Psat4g070360 Pisum sativum HOM05D005270 ORTHO05D006239 3.4e-153 545.8 505 61.0
Solyc08g079070.2 Solanum lycopersicum HOM05D005270 ORTHO05D006239 5.9e-153 545.0 509 59.5
Cc08_g12920 Coffea canephora HOM05D005270 ORTHO05D006239 7.7e-153 544.7 499 60.7
Glyma.05G056400 Glycine max HOM05D005270 ORTHO05D006239 7.7e-153 544.7 506 61.1
Peaxi162Scf00002g00815 Petunia axillaris HOM05D005270 ORTHO05D006239 7.7e-153 544.7 508 60.8
CsaV3_5G003980 Cucumis sativus L. HOM05D005270 ORTHO05D006239 1.0e-152 544.3 509 59.9
Sopen08g027530 Solanum pennellii HOM05D005270 ORTHO05D006239 1.0e-152 544.3 509 59.3
AL1G23510 Arabidopsis lyrata HOM05D005270 ORTHO05D006239 1.3e-152 543.9 519 59.2
arahy.Tifrunner.gnm1.ann1.VW53Z5 Arachis hypogaea HOM05D005270 ORTHO05D006239 1.7e-152 543.5 507 60.7
CAN.G1217.18 Capsicum annuum HOM05D000486 ORTHO05D000375 1.7e-152 543.5 507 59.4
Dinv39103 Davidia involucrata HOM05D000201 ORTHO05D001515 1.7e-152 543.5 498 61.2
CARHR012530 Cardamine hirsuta HOM05D005270 ORTHO05D006239 2.2e-152 543.1 519 59.9
Sc01g0009340 Simmondsia chinensis HOM05D005270 ORTHO05D006239 2.9e-152 542.7 504 58.9
Aa31LG1G2400 Aethionema arabicum HOM05D005270 ORTHO05D006239 3.8e-152 542.3 518 58.9
Lj4g0020394 Lotus japonicus HOM05D005270 ORTHO05D006239 5.0e-152 542.0 461 64.4
Sp1g10840 Schrenkiella parvula HOM05D005270 ORTHO05D006239 8.5e-152 541.2 520 59.4
MSTRG.25537 Avicennia marina HOM05D005270 ORTHO05D006239 2.5e-151 539.7 509 58.7
Ca_25339_v3 Cicer arietinum L. HOM05D005270 ORTHO05D006239 3.2e-151 539.3 507 60.4
C05p11010 Brassica napus HOM05D005270 ORTHO05D006239 7.2e-151 538.1 520 59.4
Thhalv10007790m.g Eutrema salsugineum HOM05D005270 ORTHO05D006239 7.2e-151 538.1 520 58.8
BolC5t29844H Brassica oleracea HOM05D005270 ORTHO05D006239 1.6e-150 537.0 520 59.0
TAR629G2769 Trochodendron aralioides HOM05D005270 ORTHO05D006239 1.6e-150 537.0 439 65.6
A06p09330 Brassica napus HOM05D005270 ORTHO05D006239 2.7e-150 536.2 520 59.2
Rhsim07G0104300 Rhododendron simsii HOM05D005270 ORTHO05D006239 2.7e-150 536.2 510 59.0
AT1G12230 Arabidopsis thaliana HOM05D005270 ORTHO05D006239 1.4e-149 533.9 541 56.9
THA.LOC104809459 Tarenaya hassleriana HOM05D005270 ORTHO05D006239 1.8e-149 533.5 518 58.9
BraA06t24120Z Brassica rapa HOM05D005270 ORTHO05D006239 2.3e-149 533.1 523 58.7
Glyma.17G138600 Glycine max HOM05D005270 ORTHO05D006239 6.7e-149 531.6 504 59.7
Medtr4g101620 Medicago truncatula HOM05D005270 ORTHO05D006239 9.7e-148 527.7 504 59.3
Aqoxy7G00723 Aquilegia oxysepala HOM05D005270 ORTHO05D006239 1.3e-147 527.3 494 59.5
Oeu038010.1 Olea europaea HOM05D005270 ORTHO05D006239 3.7e-147 525.8 509 57.6
vmacro14106 Vaccinium macrocarpon HOM05D005270 ORTHO05D006239 6.3e-147 525.0 528 57.0
TPR.G37612 Trifolium pratense HOM05D005270 ORTHO05D006239 1.1e-146 524.2 505 59.2
Migut.E01048 Erythranthe guttata HOM05D005270 ORTHO05D006239 1.5e-145 520.4 509 58.0
MBI04_g37584_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 2.0e-145 520.0 494 59.1
PSO017G6911 Papaver somniferum HOM05D005270 ORTHO05D006239 3.4e-145 519.2 456 61.4
SalBow1G0839 Salvia bowleyana HOM05D005270 ORTHO05D006239 1.3e-144 517.3 482 59.3
PSO170G6680 Papaver somniferum HOM05D005270 ORTHO05D006239 1.1e-143 514.2 464 61.0
Nitab4.5_0009175g0010 Nicotiana tabacum HOM05D005270 ORTHO05D006239 1.9e-143 513.5 508 57.1
SGA_v2.0_scaffold144G35994 Striga asiatica HOM05D005270 ORTHO05D003965 7.2e-143 511.5 508 57.1
Lsat_1_v5_gn_6_90321 Lactuca sativa HOM05D005270 ORTHO05D006239 2.7e-142 509.6 500 57.0
unitig_0.g1234 Utricularia gibba HOM05D005270 ORTHO05D006239 2.7e-142 509.6 509 57.0
HPP92_022434 Vanilla planifolia HOM05D005270 ORTHO05D006239 4.7e-142 508.8 499 57.7
ATR1152G004 Amborella trichopoda HOM05D005270 ORTHO05D006239 6.1e-142 508.4 461 60.5
HanXRQChr03g0087851 Helianthus annuus HOM05D005270 ORTHO05D006239 1.1e-140 504.2 501 56.7
Duzib205G1833 Durio zibethinus HOM05D005270 ORTHO05D006239 3.7e-139 499.2 513 57.5
ECA240G0014 Erigeron canadensis HOM05D000201 ORTHO05D006239 1.0e-136 491.1 454 57.5
Nitab4.5_0000993g0070 Nicotiana tabacum HOM05D005270 ORTHO05D006239 2.9e-136 489.6 508 54.7
CDE12G0422 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 1.4e-133 480.7 488 55.3
Phvul.003G218000 Phaseolus vulgaris HOM05D005270 ORTHO05D006239 2.2e-131 473.4 506 55.1
DCAR_006814 Daucus carota HOM05D005270 ORTHO05D006239 2.8e-131 473.0 495 54.3
AUR62007475 Chenopodium quinoa HOM05D005270 ORTHO05D006239 8.2e-131 471.5 503 54.7
Zm00001eb172680 Zea mays HOM05D005270 ORTHO05D006239 2.2e-128 463.4 488 53.1
VMungo0251G3554 Vigna mungo HOM05D005270 ORTHO05D006239 9.4e-127 458.0 506 53.4
EL10Ac5g13010 Beta vulgaris HOM05D005270 ORTHO05D006239 1.2e-126 457.6 513 53.4
COL.COLO4_37215 Corchorus olitorius HOM05D005270 ORTHO05D006239 8.8e-125 451.4 383 64.2
BcaC05g25195 Brassica carinata HOM05D005270 ORTHO05D006239 4.1e-122 442.6 467 54.6
AagrBONN_evm.TU.Sc2ySwM_369.586 Anthoceros agrestis HOM05D005270 ORTHO05D006239 9.1e-122 441.4 437 54.9
SalBow1G5553 Salvia bowleyana HOM05D005270 ORTHO05D006239 8.0e-118 428.3 443 55.3
Pp3c15_6350 Physcomitrium patens HOM05D005270 ORTHO05D006239 1.4e-117 427.6 444 52.3
CBR_g37411 Chara braunii HOM05D005270 ORTHO05D006239 7.3e-95 352.1 289 61.6
Psat5g235160 Pisum sativum HOM05D005270 ORTHO05D006239 4.0e-85 319.7 322 57.8
Psat5g232960 Pisum sativum HOM05D005270 ORTHO05D006239 7.8e-81 305.4 258 64.0
Sed0011689 Sechium edule HOM05D005270 ORTHO05D006239 1.7e-80 304.3 250 68.8
Mapoly0029s0033 Marchantia polymorpha HOM05D005270 ORTHO05D006239 5.6e-71 272.7 199 68.8
CDE04G1696 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 2.1e-65 254.2 171 74.9
Os08g0154300 Oryza sativa ssp. japonica HOM05D005270 ORTHO05D006239 4.6e-65 253.1 238 59.7
Gorai.N027100 Gossypium raimondii HOM05D005270 ORTHO05D006239 6.9e-61 239.2 259 52.9
Atru.chr9.1382 Acer truncatum HOM05D005270 ORTHO05D006239 9.6e-55 218.8 180 70.0
Mapoly0029s0029 Marchantia polymorpha HOM05D005270 ORTHO05D006239 2.0e-52 211.1 302 41.7
Haze_07851 Corylus avellana HOM05D005270 ORTHO05D006239 1.8e-48 198.0 358 39.1
DCAR_004923 Daucus carota HOM05D005270 ORTHO05D006239 2.1e-41 174.5 329 38.0
Gorai.003G169200 Gossypium raimondii HOM05D005270 ORTHO05D006239 2.7e-41 174.1 157 64.3
SEGI_05849 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 5.1e-40 169.9 100 81.0
CDE04G2727 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 1.8e-37 161.4 303 37.0
SEGI_36758 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 9.1e-37 159.1 128 65.6
Atru.chr9.1383 Acer truncatum HOM05D005270 ORTHO05D006239 1.3e-35 155.2 209 47.4
Cre14.g630847 Chlamydomonas reinhardtii HOM05D005270 ORTHO05D006239 5.0e-35 153.3 269 39.0
FAN11G3467 Fragaria x ananassa HOM05D005270 ORTHO05D006239 6.5e-35 152.9 166 55.4
FAN28G1011 Fragaria x ananassa HOM05D005270 ORTHO05D006239 8.5e-35 152.5 166 55.4
Cre01.g032650 Chlamydomonas reinhardtii HOM05D005270 ORTHO05D006239 9.4e-34 149.1 300 32.7
MCO13G140 Micromonas commoda HOM05D005270 ORTHO05D006239 7.9e-33 146.0 272 32.7
PRCOL_00004111 Prasinoderma coloniale HOM05D005270 ORTHO05D006239 3.9e-32 143.7 241 34.0
AUR62039933 Chenopodium quinoa HOM05D005270 ORTHO05D006239 2.2e-30 137.9 209 42.6
SEGI_03700 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 2.2e-27 127.9 209 39.2
RcHm_v2.0_Chr6g0270571 Rosa chinensis HOM05D005270 ORTHO05D006239 2.2e-22 111.3 78 74.4
BcaC07g38600 Brassica carinata HOM05D000238 ORTHO05D037998 8.2e-22 109.4 80 72.5
PRCOL_00004269 Prasinoderma coloniale HOM05D005270 ORTHO05D006239 1.6e-20 105.1 183 35.0
Ca_29061_v3 Cicer arietinum L. HOM05D001546 ORTHO05D002908 1.3e-19 102.1 159 36.5
FAN04G2435 Fragaria x ananassa HOM05D005270 ORTHO05D006239 6.5e-19 99.8 60 85.0
RcHm_v2.0_Chr6g0254981 Rosa chinensis HOM05D005270 ORTHO05D006239 2.5e-18 97.8 66 77.3
BcaC07g41719 Brassica carinata HOM05D005270 ORTHO05D039702 3.0e-16 90.9 80 62.5
BolC8t52299H Brassica oleracea HOM05D005270 ORTHO05D039702 3.0e-16 90.9 80 62.5
GSVIVG01028518001 Vitis vinifera HOM05D005270 ORTHO05D006239 8.8e-16 89.4 49 81.6
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.0e-15 88.2 53 84.9
FAN14G3934 Fragaria x ananassa HOM05D000617 ORTHO05D000478 2.6e-15 87.8 55 81.8
CSS0018551 Camellia sinensis var. sinensis HOM05D000691 ORTHO05D000378 4.4e-15 87.0 62 67.7
FAN23G0587 Fragaria x ananassa HOM05D016072 ORTHO05D006239 4.4e-15 87.0 94 57.4
CAN.G1488.1 Capsicum annuum HOM05D005270 ORTHO05D006239 7.5e-15 86.3 50 76.0
CAN.G605.8 Capsicum annuum HOM05D005270 ORTHO05D006239 1.3e-14 85.5 51 72.5
MBI14_g06401_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 3.7e-14 84.0 51 78.4
CAN.G1143.36 Capsicum annuum HOM05D001836 ORTHO05D001519 6.3e-14 83.2 67 59.7
FAN10G1808 Fragaria x ananassa HOM05D016072 ORTHO05D006239 6.3e-14 83.2 89 58.4
FAN23G1777 Fragaria x ananassa HOM05D016072 ORTHO05D006239 6.3e-14 83.2 89 58.4
MBI15_g47610_MAGBIO Magnolia biondii HOM05D001260 ORTHO05D004134 6.3e-14 83.2 50 80.0
FAN26G2512 Fragaria x ananassa HOM05D005270 ORTHO05D006239 8.3e-14 82.8 52 82.7
MBI03_g13472_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 7.0e-13 79.7 108 44.4
PRCOL_00005862 Prasinoderma coloniale HOM05D005270 ORTHO05D333221 3.5e-12 77.4 187 29.4
SalBow1G3426 Salvia bowleyana HOM05D005270 ORTHO05D006239 6.5e-11 73.2 49 63.3
MBI18_g46779_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D004199 8.0e-09 66.2 40 80.0
C08p47590 Brassica napus HOM05D000101 ORTHO05D000089 2.3e-08 64.7 75 46.7
MBI16_g06311_MAGBIO Magnolia biondii HOM05D001260 ORTHO05D004134 5.2e-08 63.5 40 77.5


User provided reference genes

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