Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc289.3 Carica papaya HOM05D001549 ORTHO05D117182 1.1e-109 399.8 189 100.0
Manes.14G090600 Manihot esculenta HOM05D001549 ORTHO05D003098 3.7e-15 85.9 58 72.4
Ciclev10033726m.g Citrus clementina HOM05D001549 ORTHO05D003098 1.2e-13 80.9 58 67.2
Oeu024155.1 Olea europaea HOM05D001549 ORTHO05D003098 5.8e-13 78.6 57 64.9
CiPaw.05G121200 Carya illinoinensis HOM05D001549 ORTHO05D003098 1.0e-12 77.8 58 62.1
FAN17G2469 Fragaria x ananassa HOM05D001549 ORTHO05D003098 1.3e-12 77.4 57 64.9
QL03p073309 Quercus lobata HOM05D001549 ORTHO05D003098 1.3e-12 77.4 58 65.5
THA.LOC104800376 Tarenaya hassleriana HOM05D001549 ORTHO05D003098 1.3e-12 77.4 59 62.7
Potri.010G137801 Populus trichocarpa HOM05D001549 ORTHO05D003098 3.8e-12 75.9 58 65.5
Rhsim09G0121800 Rhododendron simsii HOM05D001549 ORTHO05D003098 3.8e-12 75.9 58 60.3
Medtr5g048280 Medicago truncatula HOM05D001549 ORTHO05D003098 4.9e-12 75.5 61 57.4
TPR.G38552 Trifolium pratense HOM05D001549 ORTHO05D003098 4.9e-12 75.5 59 59.3
Sabra10G0106200 Salix brachista HOM05D001549 ORTHO05D003098 6.5e-12 75.1 56 67.9
vmacro10471 Vaccinium macrocarpon HOM05D001549 ORTHO05D003098 6.5e-12 75.1 58 60.3
Psat2g098960 Pisum sativum HOM05D001549 ORTHO05D003098 1.1e-11 74.3 59 57.6
CSS0036093 Camellia sinensis var. sinensis HOM05D001549 ORTHO05D003098 1.4e-11 73.9 58 62.1
Ca_02750_v3 Cicer arietinum L. HOM05D001549 ORTHO05D003098 1.4e-11 73.9 61 57.4
Haze_11855 Corylus avellana HOM05D001549 ORTHO05D003098 1.4e-11 73.9 65 58.5
GSVIVG01010101001 Vitis vinifera HOM05D001549 ORTHO05D003098 1.4e-11 73.9 58 56.9
Sp5g24130 Schrenkiella parvula HOM05D001549 ORTHO05D003098 1.9e-11 73.6 59 55.9
TWI75G1409 Tripterygium wilfordii HOM05D001549 ORTHO05D003098 1.9e-11 73.6 58 62.1
Thhalv10018133m.g Eutrema salsugineum HOM05D001549 ORTHO05D003098 2.5e-11 73.2 59 54.2
AUR62007871 Chenopodium quinoa HOM05D001549 ORTHO05D003098 5.5e-11 72.0 58 56.9
Glyma.01G065500 Glycine max HOM05D001549 ORTHO05D003098 5.5e-11 72.0 55 58.2
Ah.02g126710 Amaranthus hybridus HOM05D001549 ORTHO05D003098 7.1e-11 71.6 58 60.3
RcHm_v2.0_Chr4g0437311 Rosa chinensis HOM05D001549 ORTHO05D003098 7.1e-11 71.6 57 59.6
TAR622G1163 Trochodendron aralioides HOM05D001549 ORTHO05D003098 7.1e-11 71.6 58 60.3
Lalb_Chr10g0099191 Lupinus albus HOM05D001549 ORTHO05D003098 9.3e-11 71.2 55 60.0
arahy.Tifrunner.gnm1.ann1.HJR4BH Arachis hypogaea HOM05D001549 ORTHO05D003098 1.2e-10 70.9 57 56.1
ClCG05G023520 Citrullus lanatus HOM05D001549 ORTHO05D003098 1.2e-10 70.9 58 58.6
Cfa008848 Carpinus fangiana HOM05D001549 ORTHO05D003098 1.6e-10 70.5 58 58.6
DCAR_030063 Daucus carota HOM05D001549 ORTHO05D003098 1.6e-10 70.5 57 59.6
Glyma.02G123100 Glycine max HOM05D001549 ORTHO05D003098 1.6e-10 70.5 56 58.9
Lj6C773T17 Lonicera japonica HOM05D001549 ORTHO05D003098 1.6e-10 70.5 58 56.9
Lj2g0014926 Lotus japonicus HOM05D001549 ORTHO05D003098 1.6e-10 70.5 59 61.0
Os09g0475700 Oryza sativa ssp. japonica HOM05D001549 ORTHO05D003098 1.6e-10 70.5 58 56.9
Sed0003790 Sechium edule HOM05D001549 ORTHO05D003098 2.1e-10 70.1 58 55.2
EL10Ac6g14671 Beta vulgaris HOM05D001549 ORTHO05D003098 2.7e-10 69.7 57 57.9
CsaV3_5G033500 Cucumis sativus L. HOM05D001549 ORTHO05D003098 3.5e-10 69.3 58 55.2
Hund05819 Selenicereus undatus HOM05D001549 ORTHO05D003098 3.5e-10 69.3 58 56.9
Solyc05g011820.3 Solanum lycopersicum HOM05D001549 ORTHO05D003098 3.5e-10 69.3 58 58.6
Zm00001eb315940 Zea mays HOM05D001549 ORTHO05D003098 3.5e-10 69.3 56 55.4
Atru.chr11.1555 Acer truncatum HOM05D001549 ORTHO05D003098 4.6e-10 68.9 57 59.6
AT1G69020 Arabidopsis thaliana HOM05D001549 ORTHO05D003098 4.6e-10 68.9 59 54.2
Phvul.003G037801 Phaseolus vulgaris HOM05D001549 ORTHO05D003098 4.6e-10 68.9 56 57.1
PGSC0003DMG401019640 Solanum tuberosum HOM05D001549 ORTHO05D003098 4.6e-10 68.9 58 56.9
AUR62003056 Chenopodium quinoa HOM05D001549 ORTHO05D003098 6.1e-10 68.6 58 55.2
MD13G1056200 Malus domestica HOM05D001549 ORTHO05D003098 6.1e-10 68.6 57 59.6
Aa31sc93G20 Aethionema arabicum HOM05D001549 ORTHO05D003098 7.9e-10 68.2 59 54.2
Sopen05g006580 Solanum pennellii HOM05D001549 ORTHO05D003098 7.9e-10 68.2 58 56.9
arahy.Tifrunner.gnm1.ann1.BS6WTF Arachis hypogaea HOM05D001549 ORTHO05D003098 1.3e-09 67.4 57 56.1
CANSAT64G0623 Cannabis sativa HOM05D001549 ORTHO05D003098 1.3e-09 67.4 61 52.5
Thecc.02G322400 Theobroma cacao HOM05D001549 ORTHO05D003098 1.8e-09 67.0 58 50.0
AL2G28070 Arabidopsis lyrata HOM05D001549 ORTHO05D003098 2.3e-09 66.6 59 50.8
MELO3C012170.2 Cucumis melo HOM05D001549 ORTHO05D003098 2.3e-09 66.6 58 53.4
Nitab4.5_0000027g0370 Nicotiana tabacum HOM05D001549 ORTHO05D003098 3.0e-09 66.2 59 54.2
Aqoxy3G00553 Aquilegia oxysepala HOM05D001549 ORTHO05D003098 3.9e-09 65.9 58 51.7
Nitab4.5_0010778g0030 Nicotiana tabacum HOM05D001549 ORTHO05D003098 3.9e-09 65.9 59 54.2
CDE02G1645 Ceratophyllum demersum HOM05D001549 ORTHO05D003098 5.1e-09 65.5 55 47.3
Duzib248G1337 Durio zibethinus HOM05D001549 ORTHO05D003098 6.7e-09 65.1 58 50.0
VMungo1215G3135 Vigna mungo HOM05D001549 ORTHO05D003098 6.7e-09 65.1 56 55.4
BcaB03g15870 Brassica carinata HOM05D001549 ORTHO05D003098 8.7e-09 64.7 61 47.5
Cc11_g11520 Coffea canephora HOM05D001549 ORTHO05D003098 8.7e-09 64.7 58 53.4
Gorai.008G175200 Gossypium raimondii HOM05D001549 ORTHO05D003098 8.7e-09 64.7 58 50.0
SEGI_12684 Sequoiadendron giganteum HOM05D001549 ORTHO05D003098 8.7e-09 64.7 61 52.5
Gohir.A12G159300 Gossypium hirsutum HOM05D001549 ORTHO05D003098 1.1e-08 64.3 58 50.0
Gohir.D12G162600 Gossypium hirsutum HOM05D001549 ORTHO05D003098 1.1e-08 64.3 58 50.0
PGR102G1965 Punica granatum HOM05D001549 ORTHO05D003098 1.1e-08 64.3 58 53.4
SalBow2G2680 Salvia bowleyana HOM05D001549 ORTHO05D003098 1.1e-08 64.3 57 52.6
PSO017G3096 Papaver somniferum HOM05D001549 ORTHO05D003098 1.5e-08 63.9 58 53.4
Migut.L01160 Erythranthe guttata HOM05D001549 ORTHO05D003098 1.9e-08 63.5 58 51.7
Lsat_1_v5_gn_4_16581 Lactuca sativa HOM05D001549 ORTHO05D003098 1.9e-08 63.5 58 50.0
unitig_8.g3178 Utricularia gibba HOM05D001549 ORTHO05D003098 4.3e-08 62.4 59 57.6
Peaxi162Scf00188g01019 Petunia axillaris HOM05D001549 ORTHO05D003098 5.7e-08 62.0 59 50.8
Sc11g0002660 Simmondsia chinensis HOM05D001549 ORTHO05D003098 5.7e-08 62.0 60 50.0
BraA07t31133Z Brassica rapa HOM05D001549 ORTHO05D003098 9.7e-08 61.2 59 52.5
CAN.G677.15 Capsicum annuum HOM05D001549 ORTHO05D003098 1.3e-07 60.8 55 54.5
CARHR061890 Cardamine hirsuta HOM05D001549 ORTHO05D003098 1.6e-07 60.5 54 53.7
ATR0691G132 Amborella trichopoda HOM05D001549 ORTHO05D003098 2.8e-07 59.7 55 50.9
BcaC08g46351 Brassica carinata HOM05D001549 ORTHO05D003098 3.7e-07 59.3 60 50.0
C06p40820 Brassica napus HOM05D001549 ORTHO05D003098 3.7e-07 59.3 60 50.0
BolC6t39351H Brassica oleracea HOM05D001549 ORTHO05D003098 3.7e-07 59.3 60 50.0
A07p35420 Brassica napus HOM05D001549 ORTHO05D003098 6.3e-07 58.5 59 49.2
SGA_v2.0_scaffold36G14492 Striga asiatica HOM05D001549 ORTHO05D003098 8.2e-07 58.2 61 49.2
HanXRQChr17g0568701 Helianthus annuus HOM05D001549 ORTHO05D003098 1.4e-06 57.4 58 43.1
CAN.G37.3 Capsicum annuum HOM05D001549 ORTHO05D003098 1.8e-06 57.0 54 48.1


User provided reference genes

Program Settings