Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc286.7 Carica papaya HOM05D005889 ORTHO05D007495 1.6e-83 312.8 162 100.0
THA.LOC104821069 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 1.4e-15 87.0 135 44.4
Potri.001G350500 Populus trichocarpa HOM05D005889 ORTHO05D007495 6.5e-13 78.2 139 43.2
CARHR198430 Cardamine hirsuta HOM05D005889 ORTHO05D007495 1.1e-12 77.4 135 43.0
AT5G14910 Arabidopsis thaliana HOM05D005889 ORTHO05D007495 3.2e-12 75.9 135 43.7
Sabra16G0230000 Salix brachista HOM05D005889 ORTHO05D007495 3.2e-12 75.9 140 42.9
Actinidia06039 Actinidia chinensis HOM05D005889 ORTHO05D007495 4.2e-12 75.5 136 44.9
AL6G25690 Arabidopsis lyrata HOM05D005889 ORTHO05D007495 5.5e-12 75.1 135 43.7
A02p02770 Brassica napus HOM05D005889 ORTHO05D007495 9.5e-12 74.3 133 45.1
Carub.0006s1306 Capsella rubella HOM05D005889 ORTHO05D007495 9.5e-12 74.3 135 43.7
Dinv35030 Davidia involucrata HOM05D005889 ORTHO05D007495 9.5e-12 74.3 138 41.3
Aa31LG11G14590 Aethionema arabicum HOM05D005889 ORTHO05D007495 1.0e-10 70.9 135 41.5
Thhalv10014795m.g Eutrema salsugineum HOM05D005889 ORTHO05D007495 2.3e-10 69.7 133 42.1
BraA02t05248Z Brassica rapa HOM05D005889 ORTHO05D007495 5.2e-10 68.6 133 42.9
Nn4g22882 Nelumbo nucifera HOM05D005889 ORTHO05D007495 8.8e-10 67.8 135 39.3
Lsat_1_v5_gn_2_92760 Lactuca sativa HOM05D005889 ORTHO05D007495 1.5e-09 67.0 83 47.0
Manes.17G118700 Manihot esculenta HOM05D005889 ORTHO05D007495 2.0e-09 66.6 106 46.2
TAR371G1159 Trochodendron aralioides HOM05D005889 ORTHO05D007495 4.4e-09 65.5 134 36.6
Ciclev10012884m.g Citrus clementina HOM05D005889 ORTHO05D007495 5.7e-09 65.1 120 40.8
MD17G1039100 Malus domestica HOM05D005889 ORTHO05D007495 5.7e-09 65.1 134 41.8
QL02p077702 Quercus lobata HOM05D005889 ORTHO05D007495 5.7e-09 65.1 128 40.6
Hma1.2p1_0697F.1_g204970 Hydrangea macrophylla HOM05D005889 ORTHO05D007495 7.5e-09 64.7 133 38.3
Manes.15G180360 Manihot esculenta HOM05D005889 ORTHO05D007495 7.5e-09 64.7 140 38.6
Rhsim10G0026900 Rhododendron simsii HOM05D005889 ORTHO05D007495 9.8e-09 64.3 149 36.2
Atru.chr8.2424 Acer truncatum HOM05D005889 ORTHO05D007495 1.7e-08 63.5 140 37.9
Medtr6g007887 Medicago truncatula HOM05D005889 ORTHO05D007495 1.7e-08 63.5 134 36.6
RcHm_v2.0_Chr2g0170581 Rosa chinensis HOM05D005889 ORTHO05D007495 1.7e-08 63.5 96 42.7
Cc07_g02540 Coffea canephora HOM05D005889 ORTHO05D007495 2.2e-08 63.2 141 38.3
BcaNung03088 Brassica carinata HOM05D005889 ORTHO05D007495 2.8e-08 62.8 133 39.1
A03p06840 Brassica napus HOM05D005889 ORTHO05D007495 2.8e-08 62.8 133 38.3
CAN.G206.53 Capsicum annuum HOM05D005889 ORTHO05D007495 3.7e-08 62.4 137 40.1
Rhsim10G0026400 Rhododendron simsii HOM05D005889 ORTHO05D007495 4.9e-08 62.0 137 38.7
TWI56G0985 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 4.9e-08 62.0 91 46.2
Prupe.3G279900 Prunus persica HOM05D005889 ORTHO05D007495 6.3e-08 61.6 114 38.6
SalBow1G5017 Salvia bowleyana HOM05D005889 ORTHO05D007495 8.3e-08 61.2 140 41.4
Aqoxy3G03079 Aquilegia oxysepala HOM05D005889 ORTHO05D007495 1.1e-07 60.8 86 44.2
Nn3g16976 Nelumbo nucifera HOM05D005889 ORTHO05D007495 1.1e-07 60.8 138 37.7
BcaB01g05094 Brassica carinata HOM05D005889 ORTHO05D007495 1.4e-07 60.5 133 36.8
BolC3t13283H Brassica oleracea HOM05D005889 ORTHO05D007495 1.4e-07 60.5 133 36.8
Sed0001958 Sechium edule HOM05D005889 ORTHO05D007495 1.4e-07 60.5 135 36.3
TWI56G0856 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 1.4e-07 60.5 91 46.2
C03p07840 Brassica napus HOM05D005889 ORTHO05D007495 1.8e-07 60.1 133 36.1
vmacro05795 Vaccinium macrocarpon HOM05D005889 ORTHO05D007495 1.8e-07 60.1 144 36.8
Glyma.13G070100 Glycine max HOM05D005889 ORTHO05D007495 2.4e-07 59.7 71 52.1
Phvul.004G019800 Phaseolus vulgaris HOM05D005889 ORTHO05D007495 2.4e-07 59.7 133 36.8
PGSC0003DMG400000508 Solanum tuberosum HOM05D005889 ORTHO05D007495 2.4e-07 59.7 134 39.6
Thecc.04G004200 Theobroma cacao HOM05D005889 ORTHO05D007495 2.4e-07 59.7 141 39.7
Sc20g0002790 Simmondsia chinensis HOM05D005889 ORTHO05D007495 3.1e-07 59.3 140 37.9
Sopen02g031900 Solanum pennellii HOM05D005889 ORTHO05D007495 3.1e-07 59.3 136 39.7
MBI14_g19739_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 4.1e-07 58.9 112 35.7
Solyc02g087150.3 Solanum lycopersicum HOM05D005889 ORTHO05D007495 4.1e-07 58.9 136 39.0
Ah.16g106950 Amaranthus hybridus HOM05D005889 ORTHO05D007495 5.4e-07 58.5 126 35.7
FvH4_6g50270 Fragaria vesca HOM05D005889 ORTHO05D007495 5.4e-07 58.5 91 45.1
FAN05G0142 Fragaria x ananassa HOM05D005889 ORTHO05D007495 5.4e-07 58.5 141 42.6
FAN14G2248 Fragaria x ananassa HOM05D005889 ORTHO05D007495 5.4e-07 58.5 91 45.1
Lj2g0018244 Lotus japonicus HOM05D005889 ORTHO05D007495 5.4e-07 58.5 133 36.8
CDE01G0491 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 7.0e-07 58.2 118 39.8
FAN02G1209 Fragaria x ananassa HOM05D005889 ORTHO05D007495 7.0e-07 58.2 78 48.7
PGR083G2278 Punica granatum HOM05D005889 ORTHO05D007495 7.0e-07 58.2 118 36.4
Gorai.001G259800 Gossypium raimondii HOM05D005889 ORTHO05D007495 9.2e-07 57.8 134 38.8
CsaV3_3G042070 Cucumis sativus L. HOM05D005889 ORTHO05D007495 1.2e-06 57.4 133 35.3
Glyma.19G012900 Glycine max HOM05D005889 ORTHO05D007495 1.2e-06 57.4 70 48.6
THA.LOC104822380 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 1.6e-06 57.0 136 36.0
Psat1g080040 Pisum sativum HOM05D005889 ORTHO05D007495 2.0e-06 56.6 144 35.4
Eucgr.J02175 Eucalyptus grandis HOM05D005889 ORTHO05D007495 2.7e-06 56.2 35 77.1
FAN09G4317 Fragaria x ananassa HOM05D005889 ORTHO05D007495 2.7e-06 56.2 137 40.1
Gohir.A08G189616 Gossypium hirsutum HOM05D001962 ORTHO05D019237 2.7e-06 56.2 135 38.5
Gohir.A13G059250 Gossypium hirsutum HOM05D001962 ORTHO05D019237 2.7e-06 56.2 135 38.5
Gohir.D07G225400 Gossypium hirsutum HOM05D005889 ORTHO05D007495 2.7e-06 56.2 134 38.1
arahy.Tifrunner.gnm1.ann1.LQS8H1 Arachis hypogaea HOM05D005889 ORTHO05D007495 4.5e-06 55.5 34 76.5
arahy.Tifrunner.gnm1.ann1.XH0R3V Arachis hypogaea HOM05D005889 ORTHO05D007495 4.5e-06 55.5 34 76.5
BraA03t10009Z Brassica rapa HOM05D005889 ORTHO05D007495 4.5e-06 55.5 133 36.1
CiPaw.03G035200 Carya illinoinensis HOM05D005889 ORTHO05D007495 7.7e-06 54.7 132 37.1
AUR62032095 Chenopodium quinoa HOM05D005889 ORTHO05D007495 7.7e-06 54.7 136 36.8
MELO3C009927.2 Cucumis melo HOM05D005889 ORTHO05D007495 7.7e-06 54.7 134 34.3


User provided reference genes

Program Settings