Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc282.8 Carica papaya HOM05D006225 ORTHO05D007676 1.7e-171 605.9 310 100.0
COL.COLO4_09333 Corchorus olitorius HOM05D006225 ORTHO05D007676 7.8e-140 500.7 348 75.0
CiPaw.03G061500 Carya illinoinensis HOM05D006225 ORTHO05D007676 6.6e-139 497.7 355 71.8
Atru.chr1.1695 Acer truncatum HOM05D006225 ORTHO05D007676 8.6e-139 497.3 356 72.8
Thecc.04G133700 Theobroma cacao HOM05D006225 ORTHO05D007676 1.1e-138 496.9 355 72.7
Prupe.2G152900 Prunus persica HOM05D006225 ORTHO05D007676 1.8e-136 489.6 356 71.3
MD02G1195600 Malus domestica HOM05D006225 ORTHO05D007676 5.8e-135 484.6 343 72.6
Ciclev10012061m.g Citrus clementina HOM05D006225 ORTHO05D007676 7.6e-135 484.2 355 70.7
Manes.02G068700 Manihot esculenta HOM05D006225 ORTHO05D007676 9.9e-135 483.8 356 70.8
CANSAT78G2127 Cannabis sativa HOM05D006225 ORTHO05D007676 3.8e-134 481.9 356 69.1
THA.LOC104823860 Tarenaya hassleriana HOM05D006225 ORTHO05D007676 1.4e-133 479.9 355 71.3
FvH4_7g12860 Fragaria vesca HOM05D006225 ORTHO05D007676 3.2e-133 478.8 357 68.9
FAN03G3320 Fragaria x ananassa HOM05D006225 ORTHO05D007676 3.2e-133 478.8 357 69.2
FAN06G1752 Fragaria x ananassa HOM05D006225 ORTHO05D007676 3.2e-133 478.8 357 68.9
Sp7g03650 Schrenkiella parvula HOM05D006225 ORTHO05D007676 3.2e-133 478.8 356 68.8
TWI77G0942 Tripterygium wilfordii HOM05D006225 ORTHO05D007676 3.2e-133 478.8 355 71.0
Sabra17G0095400 Salix brachista HOM05D006225 ORTHO05D007676 3.5e-132 475.3 344 71.2
CSS0013578 Camellia sinensis var. sinensis HOM05D006225 ORTHO05D007676 1.0e-131 473.8 358 69.3
Gohir.D12G052400 Gossypium hirsutum HOM05D006225 ORTHO05D007676 1.0e-131 473.8 355 71.0
CSS0045838 Camellia sinensis var. sinensis HOM05D006225 ORTHO05D007676 2.3e-131 472.6 358 69.0
Thhalv10027811m.g Eutrema salsugineum HOM05D006225 ORTHO05D007676 3.9e-131 471.9 356 68.5
Gohir.A12G053700 Gossypium hirsutum HOM05D006225 ORTHO05D007676 5.1e-131 471.5 355 70.7
Gorai.008G055500 Gossypium raimondii HOM05D006225 ORTHO05D007676 5.1e-131 471.5 355 70.7
Carub.0007s3769 Capsella rubella HOM05D006225 ORTHO05D007676 1.5e-130 469.9 331 71.6
Potri.017G115200 Populus trichocarpa HOM05D006225 ORTHO05D007676 3.3e-130 468.8 358 68.7
Lsat_1_v5_gn_2_79301 Lactuca sativa HOM05D006225 ORTHO05D007676 7.3e-130 467.6 334 71.6
Aa31LG9G17110 Aethionema arabicum HOM05D006225 ORTHO05D007676 9.6e-130 467.2 354 67.2
C04p45020 Brassica napus HOM05D006225 ORTHO05D007676 2.8e-129 465.7 355 67.6
BolC4t26080H Brassica oleracea HOM05D006225 ORTHO05D007676 2.8e-129 465.7 355 67.6
BcaB02g08011 Brassica carinata HOM05D006225 ORTHO05D007676 3.6e-129 465.3 357 67.2
CARHR214220 Cardamine hirsuta HOM05D006225 ORTHO05D007676 4.8e-129 464.9 356 66.6
TAR374G0830 Trochodendron aralioides HOM05D006225 ORTHO05D007676 8.1e-129 464.2 358 67.6
CsaV3_3G020710 Cucumis sativus L. HOM05D006225 ORTHO05D007676 1.8e-128 463.0 356 67.4
AT5G38380 Arabidopsis thaliana HOM05D006225 ORTHO05D007676 2.4e-128 462.6 349 68.2
GSVIVG01031021001 Vitis vinifera HOM05D006225 ORTHO05D007676 3.1e-128 462.2 361 67.9
AL7G52230 Arabidopsis lyrata HOM05D006225 ORTHO05D007676 9.0e-128 460.7 349 68.2
A04p11390 Brassica napus HOM05D006225 ORTHO05D007676 1.2e-127 460.3 354 66.9
BraA04t16801Z Brassica rapa HOM05D006225 ORTHO05D007676 1.5e-127 459.9 355 66.8
Eucgr.G01883 Eucalyptus grandis HOM05D006225 ORTHO05D007676 2.0e-127 459.5 355 66.8
Lj2g0022404 Lotus japonicus HOM05D006225 ORTHO05D007676 2.0e-127 459.5 358 66.2
TPR.G32473 Trifolium pratense HOM05D006225 ORTHO05D007676 2.6e-127 459.1 357 66.7
BcaC02g09645 Brassica carinata HOM05D006225 ORTHO05D007676 3.4e-127 458.8 355 66.8
Ca_13730_v3 Cicer arietinum L. HOM05D006225 ORTHO05D007676 3.4e-127 458.8 357 66.4
PGR042G1089 Punica granatum HOM05D006225 ORTHO05D007676 3.4e-127 458.8 356 67.1
QL02p051369 Quercus lobata HOM05D006225 ORTHO05D007676 3.4e-127 458.8 403 61.8
BcaB06g27198 Brassica carinata HOM05D006225 ORTHO05D007676 5.8e-127 458.0 355 66.5
Medtr6g018620 Medicago truncatula HOM05D006225 ORTHO05D007676 5.8e-127 458.0 357 65.8
Glyma.13G045900 Glycine max HOM05D006225 ORTHO05D007676 3.8e-126 455.3 359 65.7
Glyma.19G049100 Glycine max HOM05D006225 ORTHO05D007676 3.8e-126 455.3 359 66.0
Lj4A191G46 Lonicera japonica HOM05D006225 ORTHO05D007676 1.4e-125 453.4 346 70.2
Psat1g081360 Pisum sativum HOM05D006225 ORTHO05D007676 3.2e-125 452.2 358 65.4
Sed0021803 Sechium edule HOM05D006225 ORTHO05D007676 1.6e-124 449.9 376 63.0
Phvul.004G065800 Phaseolus vulgaris HOM05D006225 ORTHO05D007676 2.7e-124 449.1 359 65.7
HanXRQChr14g0438471 Helianthus annuus HOM05D006225 ORTHO05D007676 3.5e-124 448.7 352 65.9
ECA238G0211 Erigeron canadensis HOM05D006225 ORTHO05D007676 3.9e-123 445.3 359 66.0
Lalb_Chr06g0174551 Lupinus albus HOM05D006225 ORTHO05D007676 3.9e-123 445.3 409 59.4
SGA_v2.0_scaffold33G13506 Striga asiatica HOM05D006225 ORTHO05D007676 9.6e-122 440.7 358 67.0
Migut.H00218 Erythranthe guttata HOM05D006225 ORTHO05D007676 1.4e-120 436.8 357 64.7
vmacro05555 Vaccinium macrocarpon HOM05D006225 ORTHO05D007676 3.1e-120 435.6 341 69.2
VMungo0464G1087 Vigna mungo HOM05D006225 ORTHO05D007676 9.0e-120 434.1 368 63.3
Sopen02g030750 Solanum pennellii HOM05D006225 ORTHO05D007676 1.2e-119 433.7 377 62.1
SalBow3G1182 Salvia bowleyana HOM05D006225 ORTHO05D007676 4.9e-118 428.3 366 62.0
Nn4g23886 Nelumbo nucifera HOM05D006225 ORTHO05D007676 3.5e-116 422.2 322 67.1
Nitab4.5_0000659g0030 Nicotiana tabacum HOM05D006225 ORTHO05D007676 6.0e-116 421.4 296 72.6
Nitab4.5_0000912g0210 Nicotiana tabacum HOM05D006225 ORTHO05D007676 6.0e-116 421.4 296 72.6
PSO063G1031 Papaver somniferum HOM05D006225 ORTHO05D007676 1.5e-114 416.8 356 61.5
PSO782G1071 Papaver somniferum HOM05D006225 ORTHO05D007676 3.1e-112 409.1 352 61.1
PGSC0003DMG400026393 Solanum tuberosum HOM05D006225 ORTHO05D007676 4.5e-111 405.2 326 65.0
AUR62023301 Chenopodium quinoa HOM05D006225 ORTHO05D007676 4.9e-110 401.7 362 58.0
ATR1125G113 Amborella trichopoda HOM05D006225 ORTHO05D007676 1.1e-109 400.6 322 64.3
AUR62009001 Chenopodium quinoa HOM05D006225 ORTHO05D007676 1.2e-108 397.1 328 61.6
Os07g0283200 Oryza sativa ssp. japonica HOM05D006225 ORTHO05D007676 3.9e-107 392.1 345 58.6
Aqoxy3G03957 Aquilegia oxysepala HOM05D006225 ORTHO05D007676 8.7e-107 391.0 333 61.0
Zm00001eb360540 Zea mays HOM05D006225 ORTHO05D007676 1.1e-106 390.6 344 57.8
EL10Ac2g04565 Beta vulgaris HOM05D006225 ORTHO05D007676 5.3e-104 381.7 277 68.6
HPP92_020146 Vanilla planifolia HOM05D006225 ORTHO05D007676 4.5e-103 378.6 357 56.0
Oeu030786.4 Olea europaea HOM05D006225 ORTHO05D007676 2.9e-102 375.9 310 66.1
FAN10G1546 Fragaria x ananassa HOM05D006225 ORTHO05D007676 1.9e-101 373.2 382 55.8
unitig_0.g7 Utricularia gibba HOM05D006225 ORTHO05D007676 1.9e-101 373.2 323 60.1
MELO3C023807.2 Cucumis melo HOM05D006225 ORTHO05D007676 1.8e-99 366.7 426 49.8
SEGI_09013 Sequoiadendron giganteum HOM05D006225 ORTHO05D007676 4.1e-96 355.5 347 52.7
Rhsim10G0067300 Rhododendron simsii HOM05D006225 ORTHO05D007676 5.1e-91 338.6 361 54.3
ClCG05G011660 Citrullus lanatus HOM05D006225 ORTHO05D007676 1.5e-90 337.0 384 52.6
arahy.Tifrunner.gnm1.ann1.IRK6TR Arachis hypogaea HOM05D006225 ORTHO05D007676 3.3e-82 309.3 365 49.9
Cfa007923 Carpinus fangiana HOM05D006225 ORTHO05D010559 7.0e-80 301.6 252 64.7
arahy.Tifrunner.gnm1.ann1.80Z7L9 Arachis hypogaea HOM05D006225 ORTHO05D007676 7.7e-79 298.1 396 46.0
Haze_14153 Corylus avellana HOM05D006225 ORTHO05D007676 3.3e-74 282.7 330 51.8
RcHm_v2.0_Chr1g0351941 Rosa chinensis HOM05D006225 ORTHO05D007676 1.1e-72 277.7 175 78.9
FAN06G4019 Fragaria x ananassa HOM05D006225 ORTHO05D007676 3.5e-71 272.7 175 77.1
Peaxi162Scf00394g00621 Petunia axillaris HOM05D006225 ORTHO05D007676 1.7e-70 270.4 184 76.1
Sc11g0008330 Simmondsia chinensis HOM05D006225 ORTHO05D007676 2.9e-70 269.6 260 56.5
Eucgr.H04974 Eucalyptus grandis HOM05D006225 ORTHO05D007676 9.4e-69 264.6 191 69.6
Cc07_g08810 Coffea canephora HOM05D006225 ORTHO05D007676 3.6e-68 262.7 175 78.3
Mapoly0135s0006 Marchantia polymorpha HOM05D006225 ORTHO05D007676 1.2e-66 257.7 345 43.5
Pp3c6_6620 Physcomitrium patens HOM05D006225 ORTHO05D007676 3.5e-63 246.1 307 42.0
Hund13715 Selenicereus undatus HOM05D006225 ORTHO05D007676 5.9e-63 245.4 181 68.0
Zm00001eb156340 Zea mays HOM05D006225 ORTHO05D007676 2.8e-60 236.5 245 53.5
SMO196G0121 Selaginella moellendorffii HOM05D006225 ORTHO05D007676 1.5e-58 230.7 277 44.4
Actinidia15885 Actinidia chinensis HOM05D006225 ORTHO05D007676 5.7e-58 228.8 151 78.8
RcHm_v2.0_Chr1g0351931 Rosa chinensis HOM05D006225 ORTHO05D007676 7.5e-58 228.4 150 74.0
CDE02G4721 Ceratophyllum demersum HOM05D006225 ORTHO05D007676 7.0e-56 221.9 172 67.4
Solyc02g086060.4 Solanum lycopersicum HOM05D006225 ORTHO05D007676 3.3e-53 213.0 188 64.4
Cc07_g08800 Coffea canephora HOM05D006225 ORTHO05D007676 5.2e-51 205.7 133 75.9
Solyc02g086070.2 Solanum lycopersicum HOM05D006225 ORTHO05D007676 8.9e-51 204.9 129 75.2
FAN10G1204 Fragaria x ananassa HOM05D006225 ORTHO05D007676 1.3e-46 191.0 159 61.6
Hma1.2p1_0136F.1_g062270 Hydrangea macrophylla HOM05D006225 ORTHO05D007676 3.9e-46 189.5 111 79.3
MD07G1125200 Malus domestica HOM05D006225 ORTHO05D007676 3.6e-44 183.0 110 75.5
arahy.Tifrunner.gnm1.ann1.8IQW6A Arachis hypogaea HOM05D006225 ORTHO05D007676 5.8e-42 175.6 122 64.8
Peaxi162Scf00394g00622 Petunia axillaris HOM05D006225 ORTHO05D007676 3.7e-41 172.9 97 81.4
arahy.Tifrunner.gnm1.ann1.PRIQ1K Arachis hypogaea HOM05D006225 ORTHO05D007676 3.5e-39 166.4 126 64.3
Oeu008428.1 Olea europaea HOM05D006225 ORTHO05D007676 2.5e-37 160.2 184 52.2
SHI22412 Sapria himalayana HOM05D006225 ORTHO05D007676 1.1e-35 154.8 94 77.7
arahy.Tifrunner.gnm1.ann1.RE0KC5 Arachis hypogaea HOM05D006225 ORTHO05D007676 1.7e-33 147.5 128 58.6
arahy.Tifrunner.gnm1.ann1.QBFC9G Arachis hypogaea HOM05D006225 ORTHO05D007676 1.1e-32 144.8 119 58.8
arahy.Tifrunner.gnm1.ann1.QHM34M Arachis hypogaea HOM05D006225 ORTHO05D007676 3.5e-31 139.8 128 57.0
CDE02G0503 Ceratophyllum demersum HOM05D006225 ORTHO05D007676 6.6e-30 135.6 81 74.1
arahy.Tifrunner.gnm1.ann1.A87HRQ Arachis hypogaea HOM05D006225 ORTHO05D007676 3.3e-29 133.3 101 62.4
Actinidia36322 Actinidia chinensis HOM05D006225 ORTHO05D007676 2.0e-26 124.0 82 72.0
arahy.Tifrunner.gnm1.ann1.5T0UVN Arachis hypogaea HOM05D006225 ORTHO05D007676 4.4e-26 122.9 75 70.7
arahy.Tifrunner.gnm1.ann1.FD2CEU Arachis hypogaea HOM05D006225 ORTHO05D007676 2.4e-24 117.1 97 59.8
Eucgr.L03301 Eucalyptus grandis HOM05D006225 ORTHO05D007676 6.0e-23 112.5 79 69.6
CBR_g65298 Chara braunii HOM05D006225 ORTHO05D007676 1.7e-22 110.9 109 47.7
MD07G1125400 Malus domestica HOM05D006225 ORTHO05D007676 9.6e-21 105.1 123 48.8
Mapoly0085s0089 Marchantia polymorpha HOM05D006555 ORTHO05D008376 1.6e-20 104.4 345 25.5
CBR_g8910 Chara braunii HOM05D006555 ORTHO05D008376 5.2e-19 99.4 196 34.7
arahy.Tifrunner.gnm1.ann1.GQQ1MZ Arachis hypogaea HOM05D006225 ORTHO05D007676 4.2e-16 89.7 68 64.7
HanXRQChr13g0396101 Helianthus annuus HOM05D006225 ORTHO05D007676 5.4e-16 89.4 79 59.5
Hma1.2p1_0239F.1_g099920 Hydrangea macrophylla HOM05D006225 ORTHO05D007676 3.5e-15 86.7 51 82.4
Gohir.D07G224400 Gossypium hirsutum HOM05D006555 ORTHO05D008376 2.1e-12 77.4 264 26.5
Gorai.001G258800 Gossypium raimondii HOM05D006555 ORTHO05D008376 2.1e-12 77.4 264 26.5
SEGI_26593 Sequoiadendron giganteum HOM05D006555 ORTHO05D008376 6.4e-09 65.9 151 27.8
MBI14_g15702_MAGBIO Magnolia biondii HOM05D006555 ORTHO05D008376 1.1e-08 65.1 325 24.0
BcaC04g24063 Brassica carinata HOM05D006225 ORTHO05D007676 1.9e-08 64.3 57 57.9
Duzib187G0608 Durio zibethinus HOM05D006555 ORTHO05D008376 7.1e-08 62.4 312 22.8
VMungo0251G3141 Vigna mungo HOM05D006555 ORTHO05D008376 1.6e-07 61.2 250 23.6
Lsat_1_v5_gn_0_24261 Lactuca sativa HOM05D006555 ORTHO05D008376 2.7e-07 60.5 157 23.6
EL10Ac3g05120 Beta vulgaris HOM05D006555 ORTHO05D008376 3.5e-07 60.1 307 22.5
Phvul.002G176300 Phaseolus vulgaris HOM05D006555 ORTHO05D008376 1.3e-06 58.2 250 23.2
MELO3C009917.2 Cucumis melo HOM05D006555 ORTHO05D008376 1.8e-06 57.8 256 21.5
HanXRQChr15g0474321 Helianthus annuus HOM05D006555 ORTHO05D008376 2.3e-06 57.4 169 22.5
Glyma.08G102000 Glycine max HOM05D006555 ORTHO05D008376 5.1e-06 56.2 319 22.6
Manes.17G119457 Manihot esculenta HOM05D006555 ORTHO05D008376 5.1e-06 56.2 144 25.7


User provided reference genes

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