Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc28.63 Carica papaya HOM05D003881 ORTHO05D004343 0.0e+00 1392.1 780 100.0
Duzib150G0508 Durio zibethinus HOM05D003881 ORTHO05D004343 3.3e-296 1021.5 1028 57.8
Thecc.09G079000 Theobroma cacao HOM05D003881 ORTHO05D004343 1.9e-291 1005.7 635 80.9
Duzib168G2095 Durio zibethinus HOM05D003881 ORTHO05D004343 8.7e-289 996.9 636 80.2
Gorai.001G015300 Gossypium raimondii HOM05D003881 ORTHO05D004343 3.7e-287 991.5 635 79.4
COL.COLO4_18111 Corchorus olitorius HOM05D003881 ORTHO05D004343 1.4e-286 989.6 1097 57.4
Gohir.D07G014500 Gossypium hirsutum HOM05D003881 ORTHO05D004343 1.4e-286 989.6 635 79.2
Gohir.A07G014800 Gossypium hirsutum HOM05D003881 ORTHO05D004343 2.4e-286 988.8 635 78.9
arahy.Tifrunner.gnm1.ann1.13CNWC Arachis hypogaea HOM05D003881 ORTHO05D004343 2.0e-285 985.7 631 79.1
QL11p000475 Quercus lobata HOM05D003881 ORTHO05D004343 1.4e-283 979.5 632 78.0
arahy.Tifrunner.gnm1.ann1.3W29E4 Arachis hypogaea HOM05D003881 ORTHO05D004343 2.7e-282 975.3 650 76.8
Ciclev10007295m.g Citrus clementina HOM05D003881 ORTHO05D004343 3.6e-282 974.9 1082 58.7
Ca_26333_v3 Cicer arietinum L. HOM05D003881 ORTHO05D004343 4.6e-282 974.5 634 78.1
Glyma.09G068600 Glycine max HOM05D003881 ORTHO05D004343 2.3e-281 972.2 634 77.8
Medtr2g041420 Medicago truncatula HOM05D003881 ORTHO05D004343 5.1e-281 971.1 634 77.9
Lj6g0005202 Lotus japonicus HOM05D003881 ORTHO05D004343 2.6e-280 968.8 634 77.8
Lalb_Chr11g0074291 Lupinus albus HOM05D003881 ORTHO05D004343 3.3e-280 968.4 634 77.9
Prupe.7G201100 Prunus persica HOM05D003881 ORTHO05D004343 4.4e-280 968.0 635 76.9
THA.LOC104815327 Tarenaya hassleriana HOM05D003881 ORTHO05D004343 1.3e-279 966.5 633 78.2
Atru.chr7.1693 Acer truncatum HOM05D003881 ORTHO05D004343 2.2e-279 965.7 1096 56.9
Psat1g133400 Pisum sativum HOM05D003881 ORTHO05D004343 2.8e-279 965.3 634 77.4
Glyma.15G176400 Glycine max HOM05D003881 ORTHO05D004343 1.4e-278 963.0 634 76.8
Phvul.009G228100 Phaseolus vulgaris HOM05D003881 ORTHO05D004343 3.1e-278 961.8 634 77.6
TAR383G1047 Trochodendron aralioides HOM05D003881 ORTHO05D004343 3.1e-278 961.8 637 76.1
CiPaw.03G207700 Carya illinoinensis HOM05D003881 ORTHO05D004343 9.1e-278 960.3 1096 54.4
FAN19G1850 Fragaria x ananassa HOM05D003881 ORTHO05D004343 9.1e-278 960.3 632 76.1
Cfa003017 Carpinus fangiana HOM05D003881 ORTHO05D004343 1.2e-277 959.9 1097 54.1
FAN26G0375 Fragaria x ananassa HOM05D003881 ORTHO05D004343 2.0e-277 959.1 632 76.1
Nn8g38678 Nelumbo nucifera HOM05D003881 ORTHO05D004343 7.7e-277 957.2 637 76.5
Dinv42377 Davidia involucrata HOM05D003881 ORTHO05D004343 1.0e-276 956.8 635 76.9
CANSAT56G1084 Cannabis sativa HOM05D003881 ORTHO05D004343 2.2e-276 955.7 635 76.7
GSVIVG01015096001 Vitis vinifera HOM05D003881 ORTHO05D004343 2.2e-276 955.7 1093 53.9
Manes.16G096500 Manihot esculenta HOM05D003881 ORTHO05D004343 2.9e-276 955.3 635 76.9
Eucgr.C00824 Eucalyptus grandis HOM05D003881 ORTHO05D004343 1.4e-275 953.0 635 76.5
PGR142G3183 Punica granatum HOM05D003881 ORTHO05D004343 2.5e-275 952.2 635 76.1
Haze_25994 Corylus avellana HOM05D003881 ORTHO05D004343 1.2e-274 949.9 1122 52.7
MELO3C015512.2 Cucumis melo HOM05D003881 ORTHO05D004343 2.1e-274 949.1 635 75.7
CsaV3_1G040850 Cucumis sativus L. HOM05D003881 ORTHO05D004343 3.6e-274 948.3 635 75.7
Sed0009854 Sechium edule HOM05D003881 ORTHO05D004343 4.7e-274 948.0 635 75.6
ClCG03G015190 Citrullus lanatus HOM05D003881 ORTHO05D004343 1.0e-273 946.8 660 73.2
TWI34G0082 Tripterygium wilfordii HOM05D003881 ORTHO05D004343 5.2e-273 944.5 634 75.9
Sopen07g027960 Solanum pennellii HOM05D003674 ORTHO05D004343 6.7e-273 944.1 659 72.7
FAN26G1433 Fragaria x ananassa HOM05D003881 ORTHO05D004343 8.8e-273 943.7 672 71.6
Sp3g24670 Schrenkiella parvula HOM05D003881 ORTHO05D004343 1.1e-272 943.3 633 76.3
HanXRQChr12g0354081 Helianthus annuus HOM05D003881 ORTHO05D004343 1.5e-272 943.0 647 73.3
Carub.0003s2725 Capsella rubella HOM05D003881 ORTHO05D004343 4.4e-272 941.4 633 75.8
Solyc07g041510.3 Solanum lycopersicum HOM05D003881 ORTHO05D004343 4.4e-272 941.4 659 72.5
Rhsim03G0228800 Rhododendron simsii HOM05D003881 ORTHO05D004343 7.4e-272 940.6 1084 50.9
CSS0040077 Camellia sinensis var. sinensis HOM05D003881 ORTHO05D004343 8.2e-271 937.2 1088 51.5
CAN.G457.4 Capsicum annuum HOM05D003881 ORTHO05D004343 8.2e-271 937.2 659 72.4
BcaB08g34515 Brassica carinata HOM05D003881 ORTHO05D004343 1.4e-270 936.4 633 75.5
AL3G43760 Arabidopsis lyrata HOM05D003881 ORTHO05D004343 3.1e-270 935.3 633 75.4
Thhalv10002377m.g Eutrema salsugineum HOM05D003881 ORTHO05D004343 1.2e-269 933.3 633 75.0
MBI19_g11836_MAGBIO Magnolia biondii HOM05D003881 ORTHO05D004343 2.0e-269 932.6 632 74.2
MD02G1088500 Malus domestica HOM05D003881 ORTHO05D004343 4.5e-269 931.4 1097 52.9
FvH4_1g08430 Fragaria vesca HOM05D003881 ORTHO05D004343 1.3e-268 929.9 635 74.0
FAN28G2111 Fragaria x ananassa HOM05D003881 ORTHO05D004343 1.7e-268 929.5 635 74.0
A03p44780 Brassica napus HOM05D003881 ORTHO05D004343 3.8e-268 928.3 632 75.0
BraA03t13613Z Brassica rapa HOM05D003881 ORTHO05D004343 3.8e-268 928.3 632 75.0
RcHm_v2.0_Chr2g0094531 Rosa chinensis HOM05D003881 ORTHO05D004343 3.8e-268 928.3 635 74.0
C03p55630 Brassica napus HOM05D003881 ORTHO05D004343 8.5e-268 927.2 632 75.0
BolC3t17840H Brassica oleracea HOM05D003881 ORTHO05D004343 8.5e-268 927.2 632 75.0
Rhsim01G0044500 Rhododendron simsii HOM05D003881 ORTHO05D004343 1.9e-267 926.0 1105 49.7
Aa31sc133G100 Aethionema arabicum HOM05D003881 ORTHO05D004343 2.5e-267 925.6 666 72.4
vmacro06329 Vaccinium macrocarpon HOM05D003881 ORTHO05D004343 1.2e-266 923.3 656 71.2
Lj7A685T51 Lonicera japonica HOM05D003881 ORTHO05D004343 6.1e-266 921.0 670 70.7
ECA232G2980 Erigeron canadensis HOM05D003881 ORTHO05D004343 1.0e-265 920.2 645 72.2
Lsat_1_v5_gn_5_141221 Lactuca sativa HOM05D003881 ORTHO05D004343 1.0e-265 920.2 668 69.3
Potri.006G143300 Populus trichocarpa HOM05D003881 ORTHO05D004343 1.8e-265 919.5 1093 52.3
Hund26018 Selenicereus undatus HOM05D003881 ORTHO05D004343 8.8e-265 917.1 635 73.2
Actinidia29923 Actinidia chinensis HOM05D003881 ORTHO05D004343 2.2e-263 912.5 636 72.8
BcaC01g03143 Brassica carinata HOM05D003881 ORTHO05D004343 1.1e-262 910.2 635 73.7
Dinv25567 Davidia involucrata HOM05D003881 ORTHO05D004343 4.1e-262 908.3 1075 52.2
Haze_25986 Corylus avellana HOM05D003881 ORTHO05D004343 9.1e-262 907.1 1122 51.3
Sabra06G0112200 Salix brachista HOM05D003881 ORTHO05D004343 1.6e-261 906.4 1096 52.1
Sabra06G0113500 Salix brachista HOM05D003881 ORTHO05D004343 1.6e-261 906.4 1096 52.1
CDE06G1176 Ceratophyllum demersum HOM05D003881 ORTHO05D004343 5.0e-260 901.4 638 71.9
MSTRG.26461 Avicennia marina HOM05D003881 ORTHO05D004343 8.5e-260 900.6 670 69.4
AUR62025189 Chenopodium quinoa HOM05D003881 ORTHO05D004343 1.1e-259 900.2 635 71.2
AUR62028984 Chenopodium quinoa HOM05D003881 ORTHO05D004343 1.1e-259 900.2 635 71.3
Aqoxy5G02361 Aquilegia oxysepala HOM05D003881 ORTHO05D004343 3.2e-259 898.7 635 71.7
Sc14g0000600 Simmondsia chinensis HOM05D003881 ORTHO05D004343 5.5e-259 897.9 635 71.8
Oeu018066.1 Olea europaea HOM05D003881 ORTHO05D004343 2.3e-257 892.5 699 66.8
ATR0598G033 Amborella trichopoda HOM05D003881 ORTHO05D004343 3.7e-255 885.2 637 70.5
EL10Ac8g19107 Beta vulgaris HOM05D003881 ORTHO05D004343 3.7e-255 885.2 647 68.9
TPR.G28668 Trifolium pratense HOM05D003881 ORTHO05D004343 1.4e-254 883.2 591 75.5
SGA_v2.0_scaffold21G09481 Striga asiatica HOM05D003881 ORTHO05D004343 2.4e-254 882.5 651 68.8
PSO135G0960 Papaver somniferum HOM05D003881 ORTHO05D004343 5.0e-252 874.8 633 70.0
PSO724G0120 Papaver somniferum HOM05D003881 ORTHO05D004343 6.5e-252 874.4 633 70.1
Cc06_g12030 Coffea canephora HOM05D003881 ORTHO05D004343 4.2e-251 871.7 648 69.3
DCAR_031930 Daucus carota HOM05D003881 ORTHO05D004343 2.1e-250 869.4 648 68.1
Ah.14g084990 Amaranthus hybridus HOM05D003881 ORTHO05D004343 1.8e-249 866.3 628 69.4
Nitab4.5_0001488g0030 Nicotiana tabacum HOM05D003881 ORTHO05D004343 3.0e-249 865.5 609 71.9
Rhsim01G0044300 Rhododendron simsii HOM05D003881 ORTHO05D004343 2.3e-244 849.4 1085 48.0
Nitab4.5_0000343g0070 Nicotiana tabacum HOM05D003881 ORTHO05D004343 5.0e-244 848.2 703 64.2
Migut.L01552 Erythranthe guttata HOM05D003881 ORTHO05D004343 2.6e-240 835.9 656 66.0
Oeu041279.1 Olea europaea HOM05D003881 ORTHO05D004343 1.7e-239 833.2 647 64.9
SEGI_24391 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 8.6e-236 820.8 633 65.2
TAR383G0903 Trochodendron aralioides HOM05D003881 ORTHO05D004343 3.6e-234 815.5 549 74.9
Peaxi162Scf00127g00019 Petunia axillaris HOM05D003881 ORTHO05D004343 2.3e-233 812.8 649 65.3
SalBow4G1287 Salvia bowleyana HOM05D003881 ORTHO05D004343 5.0e-228 795.0 659 62.8
DCAR_024741 Daucus carota HOM05D003881 ORTHO05D004343 1.7e-220 770.0 812 53.1
Zm00001eb073540 Zea mays HOM05D003881 ORTHO05D004343 1.4e-217 760.4 649 62.4
Mapoly0010s0036 Marchantia polymorpha HOM05D003881 ORTHO05D004343 8.7e-212 741.1 635 59.4
SMO143G0189 Selaginella moellendorffii HOM05D003881 ORTHO05D004343 2.1e-205 719.9 633 58.3
Pp3c3_17140 Physcomitrium patens HOM05D003881 ORTHO05D004343 1.6e-202 710.3 633 57.0
AagrBONN_evm.TU.Sc2ySwM_344.1648 Anthoceros agrestis HOM05D003881 ORTHO05D004343 9.3e-190 667.9 633 53.4
HPP92_007226 Vanilla planifolia HOM05D003881 ORTHO05D004343 2.7e-173 613.2 479 64.9
unitig_8.g3529 Utricularia gibba HOM05D003881 ORTHO05D004343 9.7e-163 578.2 620 52.3
CARHR103810 Cardamine hirsuta HOM05D003881 ORTHO05D004343 1.2e-147 528.1 318 83.6
Os07g0476200 Oryza sativa ssp. japonica HOM05D003881 ORTHO05D004343 4.8e-146 522.7 393 67.4
CARHR103800 Cardamine hirsuta HOM05D003881 ORTHO05D004343 2.9e-114 417.2 315 68.6
CBR_g74629 Chara braunii HOM05D003881 ORTHO05D004343 6.2e-109 399.4 340 57.6
SEGI_36108 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 6.0e-96 356.3 451 48.1
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 7.8e-88 329.3 277 63.9
SHI23794 Sapria himalayana HOM05D003881 ORTHO05D004343 5.6e-86 323.2 322 55.0
QL01p053501 Quercus lobata HOM05D003881 ORTHO05D004343 8.4e-74 282.7 248 60.9
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 5.7e-70 270.0 233 61.4
Zm00001eb329800 Zea mays HOM05D003881 ORTHO05D004343 2.5e-57 228.0 187 62.6
MCO14G023 Micromonas commoda HOM05D003881 ORTHO05D004343 1.1e-46 192.6 441 30.4
SEGI_33062 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 2.0e-46 191.8 144 64.6
QL10p021459 Quercus lobata HOM05D000176 ORTHO05D000106 7.4e-46 189.9 135 71.1
ATR0684G009 Amborella trichopoda HOM05D003881 ORTHO05D004343 5.9e-43 180.3 135 62.2
ATR0193G014 Amborella trichopoda HOM05D003881 ORTHO05D004343 1.3e-42 179.1 107 82.2
CBR_g74627 Chara braunii HOM05D003881 ORTHO05D004343 4.2e-41 174.1 229 43.2
ATR0193G031 Amborella trichopoda HOM05D003881 ORTHO05D004343 5.7e-38 163.7 109 73.4
Lsat_1_v5_gn_3_15640 Lactuca sativa HOM05D003881 ORTHO05D004343 8.2e-37 159.8 104 69.2
Cre03.g189605 Chlamydomonas reinhardtii HOM05D003881 ORTHO05D004343 3.1e-36 157.9 765 22.4
Psat4g185720 Pisum sativum HOM05D003881 ORTHO05D004343 5.3e-36 157.1 156 57.1
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 4.7e-32 144.1 282 36.2
ATR0684G059 Amborella trichopoda HOM05D003881 ORTHO05D004343 2.6e-30 138.3 93 74.2
TAR383G0300 Trochodendron aralioides HOM05D003881 ORTHO05D004343 6.3e-29 133.7 81 79.0
Psat1g034120 Pisum sativum HOM05D003881 ORTHO05D004343 4.5e-27 127.5 90 74.4
Hma1.2p1_0528F.1_g173040 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 1.6e-24 119.0 108 58.3
Hma1.2p1_0980F.1_g243635 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 1.6e-24 119.0 108 58.3
Hma1.2p1_1385F.1_g279633 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 1.6e-24 119.0 108 58.3
Hma1.2p1_0508F.1_g168780 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 2.4e-20 105.1 79 62.0
SEGI_26438 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.3e-18 99.4 59 78.0
SEGI_35060 Sequoiadendron giganteum HOM05D000021 ORTHO05D000010 1.3e-18 99.4 121 47.1
Rhsim03G0229000 Rhododendron simsii HOM05D003881 ORTHO05D004343 1.7e-18 99.0 97 62.9
Hma1.2p1_0430F.1_g151320 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 2.9e-18 98.2 60 75.0
vmacro22673 Vaccinium macrocarpon HOM05D003881 ORTHO05D004343 5.0e-18 97.4 110 57.3
SEGI_29160 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 9.5e-17 93.2 119 42.0
Actinidia38472 Actinidia chinensis HOM05D003881 ORTHO05D004343 1.6e-16 92.4 215 36.3
SEGI_15507 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.6e-16 92.4 79 58.2
HPP92_028483 Vanilla planifolia HOM05D003881 ORTHO05D004343 3.6e-16 91.3 61 65.6
TPR.G10985 Trifolium pratense HOM05D003881 ORTHO05D004343 8.0e-16 90.1 47 95.7
RcHm_v2.0_Chr5g0007121 Rosa chinensis HOM05D003881 ORTHO05D004343 5.2e-15 87.4 51 78.4
SEGI_23032 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 2.0e-14 85.5 68 60.3
PGSC0003DMG400019565 Solanum tuberosum HOM05D003881 ORTHO05D004343 1.7e-13 82.4 95 57.9
Actinidia38474 Actinidia chinensis HOM05D003881 ORTHO05D004343 5.0e-10 70.9 53 71.7
BolC7t41346H Brassica oleracea HOM05D003881 ORTHO05D004343 1.5e-09 69.3 60 60.0
C07p09280 Brassica napus HOM05D003881 ORTHO05D004343 4.3e-09 67.8 60 60.0
Psat6g098400 Pisum sativum HOM05D003881 ORTHO05D004343 4.3e-09 67.8 62 56.5
Sopen07g021070 Solanum pennellii HOM05D003881 ORTHO05D004343 9.5e-09 66.6 108 49.1
A07p06220 Brassica napus HOM05D003881 ORTHO05D004343 1.8e-07 62.4 69 49.3
Atru.chr4.1612 Acer truncatum HOM05D003881 ORTHO05D004343 1.2e-06 59.7 47 66.0
AUR62025190 Chenopodium quinoa HOM05D003881 ORTHO05D004343 1.2e-06 59.7 109 45.0
Psat0s7528g0040 Pisum sativum HOM05D003881 ORTHO05D004343 1.2e-06 59.7 48 66.7
Psat1g059560 Pisum sativum HOM05D003881 ORTHO05D004343 1.2e-06 59.7 48 66.7


User provided reference genes

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