Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc28.44 Carica papaya HOM05D008087 ORTHO05D010187 2.4e-103 379.0 213 100.0
Thecc.09G077500 Theobroma cacao HOM05D008087 ORTHO05D010187 1.0e-82 310.5 210 81.0
Duzib168G2281 Durio zibethinus HOM05D008087 ORTHO05D010187 3.7e-80 302.0 210 78.1
Cfa002992 Carpinus fangiana HOM05D008087 ORTHO05D010187 5.3e-79 298.1 210 76.2
COL.COLO4_18101 Corchorus olitorius HOM05D008087 ORTHO05D010187 9.0e-79 297.4 210 78.1
Ciclev10009482m.g Citrus clementina HOM05D008087 ORTHO05D010187 2.0e-78 296.2 210 77.1
QL11p000704 Quercus lobata HOM05D008087 ORTHO05D010187 5.8e-78 294.7 209 75.6
Gorai.010G088200 Gossypium raimondii HOM05D008087 ORTHO05D010187 3.8e-77 292.0 210 76.2
Gohir.A06G076300 Gossypium hirsutum HOM05D008087 ORTHO05D010187 4.2e-76 288.5 208 76.0
TWI34G0776 Tripterygium wilfordii HOM05D008087 ORTHO05D010187 5.5e-76 288.1 210 72.4
Gohir.D06G075300 Gossypium hirsutum HOM05D008087 ORTHO05D010187 7.2e-76 287.7 210 75.7
Prupe.7G199300 Prunus persica HOM05D008087 ORTHO05D010187 2.1e-75 286.2 214 74.8
DCAR_024749 Daucus carota HOM05D008087 ORTHO05D010187 2.7e-75 285.8 213 75.1
Sabra18G0058300 Salix brachista HOM05D008087 ORTHO05D010187 6.1e-75 284.6 212 73.6
Hma1.2p1_0179F.1_g079550 Hydrangea macrophylla HOM05D008087 ORTHO05D010187 5.1e-74 281.6 210 74.3
CiPaw.03G206800 Carya illinoinensis HOM05D008087 ORTHO05D010187 1.1e-73 280.4 211 73.5
Potri.018G065700 Populus trichocarpa HOM05D008087 ORTHO05D010187 1.1e-73 280.4 212 73.1
CSS0002060 Camellia sinensis var. sinensis HOM05D008087 ORTHO05D010187 2.5e-73 279.3 210 73.8
TAR383G0588 Trochodendron aralioides HOM05D008087 ORTHO05D010187 3.3e-73 278.9 209 73.7
MD15G1217200 Malus domestica HOM05D008087 ORTHO05D010187 9.7e-73 277.3 214 70.6
Glyma.13G110250 Glycine max HOM05D008087 ORTHO05D010187 1.3e-72 276.9 211 72.0
Manes.16G095600 Manihot esculenta HOM05D008087 ORTHO05D010187 3.7e-72 275.4 210 70.5
CSS0037579 Camellia sinensis var. sinensis HOM05D008087 ORTHO05D010187 8.2e-72 274.2 210 72.9
GSVIVG01015086001 Vitis vinifera HOM05D004023 ORTHO05D004681 1.1e-71 273.9 198 76.8
Lj4P912T21 Lonicera japonica HOM05D008087 ORTHO05D010187 1.4e-71 273.5 211 73.0
Nitab4.5_0002966g0020 Nicotiana tabacum HOM05D008087 ORTHO05D010187 1.4e-71 273.5 209 73.2
Cc06_g12130 Coffea canephora HOM05D008087 ORTHO05D010187 1.8e-71 273.1 213 71.8
Eucgr.C03187 Eucalyptus grandis HOM05D008087 ORTHO05D010187 3.1e-71 272.3 210 71.4
Lj4g0020355 Lotus japonicus HOM05D008087 ORTHO05D010187 1.0e-69 267.3 208 69.7
Glyma.17G049450 Glycine max HOM05D008087 ORTHO05D010187 1.3e-69 266.9 211 70.1
Phvul.003G131000 Phaseolus vulgaris HOM05D008087 ORTHO05D010187 1.7e-69 266.5 208 70.2
MSTRG.19463 Avicennia marina HOM05D008087 ORTHO05D010187 2.2e-69 266.2 204 73.5
Oeu049121.1 Olea europaea HOM05D008087 ORTHO05D010187 3.8e-69 265.4 209 69.4
VMungo1215G2436 Vigna mungo HOM05D008087 ORTHO05D010187 3.8e-69 265.4 208 70.2
CANSAT56G3514 Cannabis sativa HOM05D008087 ORTHO05D010187 1.1e-68 263.8 212 68.4
Atru.chr7.1701 Acer truncatum HOM05D002335 ORTHO05D006692 5.5e-68 261.5 184 77.2
RcHm_v2.0_Chr2g0094891 Rosa chinensis HOM05D008087 ORTHO05D010187 9.4e-68 260.8 213 69.0
Lalb_Chr07g0181171 Lupinus albus HOM05D008087 ORTHO05D010187 2.1e-67 259.6 208 66.8
Rhsim05G0007800 Rhododendron simsii HOM05D008087 ORTHO05D010187 3.6e-67 258.8 210 70.0
Nn8g38653 Nelumbo nucifera HOM05D008087 ORTHO05D010187 2.3e-66 256.1 210 68.1
PSO135G0253 Papaver somniferum HOM05D008087 ORTHO05D010187 6.7e-66 254.6 213 66.2
arahy.Tifrunner.gnm1.ann1.TB6UZQ Arachis hypogaea HOM05D008087 ORTHO05D010187 2.0e-65 253.1 208 65.9
AUR62028937 Chenopodium quinoa HOM05D008087 ORTHO05D010187 6.3e-64 248.1 215 64.7
SalBow6G2426 Salvia bowleyana HOM05D008087 ORTHO05D010187 1.1e-63 247.3 206 69.4
PGSC0003DMG400013001 Solanum tuberosum HOM05D008087 ORTHO05D010187 3.1e-63 245.7 210 65.2
Psat4g017680 Pisum sativum HOM05D008087 ORTHO05D010187 4.1e-63 245.4 210 67.6
Solyc07g041770.1 Solanum lycopersicum HOM05D008087 ORTHO05D010187 5.3e-63 245.0 210 64.8
Sopen07g021260 Solanum pennellii HOM05D008087 ORTHO05D010187 2.0e-62 243.0 210 65.2
Duzib187G0811 Durio zibethinus HOM05D008087 ORTHO05D010187 3.8e-61 238.8 161 79.5
PGR044G2582 Punica granatum HOM05D008087 ORTHO05D010187 6.5e-61 238.0 210 63.3
Aqoxy1G01322 Aquilegia oxysepala HOM05D008087 ORTHO05D010187 4.2e-60 235.3 209 64.1
Migut.J00928 Erythranthe guttata HOM05D008087 ORTHO05D010187 2.7e-59 232.6 202 68.8
TPR.G12579 Trifolium pratense HOM05D008087 ORTHO05D010187 1.5e-57 226.9 208 61.5
Medtr4g125370 Medicago truncatula HOM05D008087 ORTHO05D010187 2.0e-57 226.5 208 64.4
CSS0034066 Camellia sinensis var. sinensis HOM05D008087 ORTHO05D010187 4.4e-57 225.3 171 73.1
Eucgr.L02787 Eucalyptus grandis HOM05D008087 ORTHO05D010187 5.7e-57 224.9 210 63.3
MBI19_g11825_MAGBIO Magnolia biondii HOM05D008087 ORTHO05D010187 2.2e-56 223.0 210 58.6
Sc08g0008880 Simmondsia chinensis HOM05D008087 ORTHO05D010187 4.2e-52 208.8 210 57.6
Ah.09g231600 Amaranthus hybridus HOM05D008087 ORTHO05D010187 5.7e-49 198.4 187 59.4
Ca_21320_v3 Cicer arietinum L. HOM05D008087 ORTHO05D010187 9.7e-49 197.6 208 57.7
AL5G20930 Arabidopsis lyrata HOM05D008087 ORTHO05D010187 2.0e-46 189.9 210 54.3
AT3G42725 Arabidopsis thaliana HOM05D008087 ORTHO05D010187 1.9e-44 183.3 209 52.2
THA.LOC104811009 Tarenaya hassleriana HOM05D008087 ORTHO05D010187 3.0e-42 176.0 214 50.5
Lsat_1_v5_gn_7_35101 Lactuca sativa HOM05D004023 ORTHO05D004681 2.0e-41 173.3 187 57.8
Nitab4.5_0000343g0200 Nicotiana tabacum HOM05D008087 ORTHO05D010187 1.6e-35 153.7 108 75.9
Peaxi162Scf00127g00202 Petunia axillaris HOM05D008087 ORTHO05D010187 2.1e-35 153.3 108 75.0
PSO724G0984 Papaver somniferum HOM05D008087 ORTHO05D010187 1.9e-28 130.2 108 66.7
PGR044G2297 Punica granatum HOM05D008087 ORTHO05D010187 9.5e-28 127.9 127 55.9
Zm00001eb005810 Zea mays HOM05D008087 ORTHO05D010187 2.2e-24 116.7 208 41.3
Ah.14g084950 Amaranthus hybridus HOM05D008087 ORTHO05D010187 5.4e-23 112.1 112 57.1
Dinv42391 Davidia involucrata HOM05D002335 ORTHO05D006692 5.0e-21 105.5 95 63.2
MD15G1091800 Malus domestica HOM05D008087 ORTHO05D010187 4.3e-20 102.4 84 60.7
HPP92_026302 Vanilla planifolia HOM05D008087 ORTHO05D010187 1.2e-17 94.4 179 36.3
ATR0598G047 Amborella trichopoda HOM05D008087 ORTHO05D010187 1.4e-15 87.4 118 38.1
SMO358G0701 Selaginella moellendorffii HOM05D016812 ORTHO05D010187 5.6e-12 75.5 189 32.3
Aa31LG4G13290 Aethionema arabicum HOM05D008087 ORTHO05D010187 3.6e-11 72.8 123 36.6
ECA240G4665 Erigeron canadensis HOM05D002335 ORTHO05D006692 4.7e-11 72.4 53 67.9
Ciclev10030215m.g Citrus clementina HOM05D008087 ORTHO05D010187 1.7e-08 63.9 167 38.3
SEGI_14451 Sequoiadendron giganteum HOM05D003033 ORTHO05D003475 1.6e-06 57.4 168 29.8


User provided reference genes

Program Settings