Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc28.33 Carica papaya HOM05D002335 ORTHO05D006282 3.0e-199 698.4 362 100.0
Ciclev10008755m.g Citrus clementina HOM05D002335 ORTHO05D006282 1.1e-100 370.9 230 83.5
Atru.chr7.1708 Acer truncatum HOM05D002335 ORTHO05D006282 2.4e-100 369.8 229 82.5
Cfa002987 Carpinus fangiana HOM05D002335 ORTHO05D006282 2.7e-99 366.3 229 82.1
Prupe.7G198700 Prunus persica HOM05D002335 ORTHO05D006282 2.7e-99 366.3 224 81.7
CiPaw.04G143000 Carya illinoinensis HOM05D002335 ORTHO05D006282 1.1e-97 360.9 230 80.4
GSVIVG01015081001 Vitis vinifera HOM05D002335 ORTHO05D006282 1.9e-97 360.1 229 79.9
MD15G1217700 Malus domestica HOM05D002335 ORTHO05D006282 9.6e-97 357.8 226 80.5
FvH4_1g08690 Fragaria vesca HOM05D002335 ORTHO05D006282 4.7e-96 355.5 226 79.6
FAN26G1551 Fragaria x ananassa HOM05D002335 ORTHO05D006282 8.1e-96 354.8 226 78.8
FAN28G1803 Fragaria x ananassa HOM05D002335 ORTHO05D006282 1.1e-95 354.4 226 78.8
Carub.0003s2712 Capsella rubella HOM05D002335 ORTHO05D006282 9.0e-95 351.3 229 79.0
Dinv25558 Davidia involucrata HOM05D002335 ORTHO05D006282 1.5e-94 350.5 229 78.6
Hma1.2p1_0169F.1_g074510 Hydrangea macrophylla HOM05D002335 ORTHO05D006282 1.5e-94 350.5 229 78.2
Dinv42395 Davidia involucrata HOM05D002335 ORTHO05D006282 2.6e-94 349.7 229 79.0
Eucgr.C03328 Eucalyptus grandis HOM05D002335 ORTHO05D006282 3.4e-94 349.4 230 76.1
RcHm_v2.0_Chr2g0095141 Rosa chinensis HOM05D002335 ORTHO05D006282 3.4e-94 349.4 226 78.3
THA.LOC104815334 Tarenaya hassleriana HOM05D002335 ORTHO05D006282 3.4e-94 349.4 229 78.6
Thecc.09G076700 Theobroma cacao HOM05D002335 ORTHO05D006282 4.4e-94 349.0 229 79.5
CSS0005090 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006282 9.9e-94 347.8 230 77.8
Duzib187G0696 Durio zibethinus HOM05D002335 ORTHO05D006282 1.7e-93 347.1 229 79.0
Gohir.D13G196375 Gossypium hirsutum HOM05D002335 ORTHO05D006282 1.4e-92 344.0 230 78.7
Gorai.013G224300 Gossypium raimondii HOM05D002335 ORTHO05D006282 1.4e-92 344.0 230 78.7
TWI34G0307 Tripterygium wilfordii HOM05D002335 ORTHO05D006282 1.4e-92 344.0 231 77.5
CANSAT56G2952 Cannabis sativa HOM05D002335 ORTHO05D006282 3.2e-92 342.8 241 75.5
AL3G43580 Arabidopsis lyrata HOM05D002335 ORTHO05D006282 9.3e-92 341.3 229 77.7
Nn8g38636 Nelumbo nucifera HOM05D002335 ORTHO05D006282 9.3e-92 341.3 229 75.5
Potri.018G056500 Populus trichocarpa HOM05D002335 ORTHO05D006282 9.3e-92 341.3 229 76.4
MD02G1091400 Malus domestica HOM05D002335 ORTHO05D006282 1.2e-91 340.9 226 76.1
Aa31sc133G10 Aethionema arabicum HOM05D002335 ORTHO05D006282 3.5e-91 339.3 232 76.3
Gohir.A13G190800 Gossypium hirsutum HOM05D002335 ORTHO05D006282 1.0e-90 337.8 230 77.8
Sabra18G0052300 Salix brachista HOM05D002335 ORTHO05D006282 1.7e-90 337.0 229 75.5
Sp3g24570 Schrenkiella parvula HOM05D002335 ORTHO05D006282 3.0e-90 336.3 229 76.4
MELO3C015522.2 Cucumis melo HOM05D002335 ORTHO05D006282 5.1e-90 335.5 229 74.7
CsaV3_1G041060 Cucumis sativus L. HOM05D002335 ORTHO05D006282 5.1e-90 335.5 229 74.7
Manes.16G095200 Manihot esculenta HOM05D002335 ORTHO05D006282 8.7e-90 334.7 229 76.4
ClCG03G015070 Citrullus lanatus HOM05D002335 ORTHO05D006282 1.5e-89 334.0 229 73.8
Solyc12g009100.2 Solanum lycopersicum HOM05D002335 ORTHO05D006282 1.6e-88 330.5 229 72.9
Sopen12g004050 Solanum pennellii HOM05D002335 ORTHO05D006282 1.6e-88 330.5 229 73.4
COL.COLO4_18096 Corchorus olitorius HOM05D002335 ORTHO05D006282 2.1e-88 330.1 229 76.9
TAR383G0969 Trochodendron aralioides HOM05D002335 ORTHO05D006282 2.1e-88 330.1 229 72.9
CAN.G1661.12 Capsicum annuum HOM05D002335 ORTHO05D006282 2.8e-88 329.7 227 74.4
Duzib168G0796 Durio zibethinus HOM05D002335 ORTHO05D006282 2.8e-88 329.7 229 75.5
Glyma.15G177700 Glycine max HOM05D002335 ORTHO05D006282 8.1e-88 328.2 229 72.9
BcaB06g26879 Brassica carinata HOM05D002335 ORTHO05D006282 2.4e-87 326.6 229 73.8
A07p06320 Brassica napus HOM05D002335 ORTHO05D006282 5.3e-87 325.5 229 73.4
Sed0016034 Sechium edule HOM05D002335 ORTHO05D006282 5.3e-87 325.5 229 72.9
TPR.G27760 Trifolium pratense HOM05D002335 ORTHO05D006282 5.3e-87 325.5 229 72.1
Ca_02205_v3 Cicer arietinum L. HOM05D002335 ORTHO05D006282 6.9e-87 325.1 229 73.4
Lj6g0009960 Lotus japonicus HOM05D002335 ORTHO05D006282 9.0e-87 324.7 230 73.5
BcaC06g35950 Brassica carinata HOM05D002335 ORTHO05D006282 5.8e-86 322.0 229 72.9
C07p09370 Brassica napus HOM05D002335 ORTHO05D006282 5.8e-86 322.0 229 72.9
BolC7t41360H Brassica oleracea HOM05D002335 ORTHO05D006282 5.8e-86 322.0 229 72.9
Cc06_g12190 Coffea canephora HOM05D002335 ORTHO05D006282 5.8e-86 322.0 229 72.1
Glyma.09G069700 Glycine max HOM05D002335 ORTHO05D006282 7.6e-86 321.6 229 72.5
MBI19_g16223_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006282 7.6e-86 321.6 226 73.0
VMungo1309G0226 Vigna mungo HOM05D002335 ORTHO05D006282 9.9e-86 321.2 229 72.1
Actinidia29935 Actinidia chinensis HOM05D002335 ORTHO05D006282 2.2e-85 320.1 226 73.5
Medtr2g041690 Medicago truncatula HOM05D002335 ORTHO05D006282 4.9e-85 318.9 229 71.6
AL6G32120 Arabidopsis lyrata HOM05D002335 ORTHO05D006282 6.4e-85 318.5 230 72.2
MSTRG.19458 Avicennia marina HOM05D002335 ORTHO05D006282 6.4e-85 318.5 229 71.6
Migut.J00924 Erythranthe guttata HOM05D002335 ORTHO05D006282 1.4e-84 317.4 229 72.5
Peaxi162Scf00928g00036 Petunia axillaris HOM05D002335 ORTHO05D006282 2.4e-84 316.6 209 77.5
Thhalv10014003m.g Eutrema salsugineum HOM05D002335 ORTHO05D006282 3.2e-84 316.2 218 74.3
Psat3g025000 Pisum sativum HOM05D002335 ORTHO05D006282 4.2e-84 315.8 229 71.2
BraA07t28424Z Brassica rapa HOM05D002335 ORTHO05D006282 7.1e-84 315.1 245 68.6
Carub.0006s1891 Capsella rubella HOM05D002335 ORTHO05D006282 7.1e-84 315.1 230 70.9
Phvul.009G227200 Phaseolus vulgaris HOM05D002335 ORTHO05D006282 9.3e-84 314.7 229 71.2
Aqoxy7G04129 Aquilegia oxysepala HOM05D002335 ORTHO05D006282 1.2e-83 314.3 229 69.0
AT5G20580 Arabidopsis thaliana HOM05D002335 ORTHO05D006282 1.6e-83 313.9 230 71.3
Eucgr.C03263 Eucalyptus grandis HOM05D002335 ORTHO05D006282 3.5e-83 312.8 203 77.3
Sp6g23900 Schrenkiella parvula HOM05D002335 ORTHO05D006282 3.5e-83 312.8 230 72.2
HPP92_004364 Vanilla planifolia HOM05D002335 ORTHO05D006282 3.5e-83 312.8 226 68.6
BraA03t10325Z Brassica rapa HOM05D002335 ORTHO05D006282 4.6e-83 312.4 230 71.7
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 1.0e-82 311.2 365 52.6
PSO135G0390 Papaver somniferum HOM05D002335 ORTHO05D006282 6.7e-82 308.5 229 69.0
PSO724G0129 Papaver somniferum HOM05D002335 ORTHO05D006282 2.5e-81 306.6 229 68.6
THA.LOC104799620 Tarenaya hassleriana HOM05D002335 ORTHO05D006282 3.3e-81 306.2 215 74.4
Lsat_1_v5_gn_7_35121 Lactuca sativa HOM05D002335 ORTHO05D006692 4.3e-81 305.8 229 69.9
Manes.03G040500 Manihot esculenta HOM05D002335 ORTHO05D006282 9.6e-81 304.7 229 71.2
Haze_26014 Corylus avellana HOM05D002335 ORTHO05D006282 1.6e-80 303.9 263 65.8
HanXRQChr04g0126011 Helianthus annuus HOM05D002335 ORTHO05D006282 4.8e-80 302.4 230 70.0
ATR0598G025 Amborella trichopoda HOM05D002335 ORTHO05D006282 1.7e-77 293.9 231 65.8
QL11p000781 Quercus lobata HOM05D002335 ORTHO05D006282 8.4e-77 291.6 258 65.9
Sopen07g021360 Solanum pennellii HOM05D002335 ORTHO05D006282 1.4e-76 290.8 215 70.7
AUR62028934 Chenopodium quinoa HOM05D002335 ORTHO05D006282 2.4e-76 290.0 222 66.7
ECA236G4601 Erigeron canadensis HOM05D002335 ORTHO05D006282 4.2e-76 289.3 220 66.4
Lsat_1_v5_gn_8_86481 Lactuca sativa HOM05D002335 ORTHO05D006282 1.6e-75 287.3 230 63.9
PGR044G1875 Punica granatum HOM05D002335 ORTHO05D006282 2.3e-74 283.5 181 79.6
TWI63G1279 Tripterygium wilfordii HOM05D002335 ORTHO05D006282 5.1e-74 282.3 229 67.2
EL10Ac8g19056 Beta vulgaris HOM05D002335 ORTHO05D006282 1.5e-73 280.8 249 61.8
SalBow6G4624 Salvia bowleyana HOM05D002335 ORTHO05D006282 3.1e-71 273.1 189 75.7
Lalb_Chr23g0276371 Lupinus albus HOM05D002335 ORTHO05D006282 1.2e-70 271.2 206 67.0
CARHR103630 Cardamine hirsuta HOM05D002335 ORTHO05D006282 4.5e-70 269.2 175 79.4
Lalb_Chr07g0181191 Lupinus albus HOM05D002335 ORTHO05D006282 5.8e-70 268.9 238 59.2
Nitab4.5_0011754g0010 Nicotiana tabacum HOM05D002335 ORTHO05D006282 7.6e-70 268.5 229 66.4
Hund26035 Selenicereus undatus HOM05D002335 ORTHO05D006282 1.3e-69 267.7 182 74.2
arahy.Tifrunner.gnm1.ann1.3UYF95 Arachis hypogaea HOM05D002335 ORTHO05D006282 4.9e-69 265.8 223 62.8
arahy.Tifrunner.gnm1.ann1.UHGN3W Arachis hypogaea HOM05D002335 ORTHO05D006282 4.9e-69 265.8 229 62.4
AUR62025250 Chenopodium quinoa HOM05D002335 ORTHO05D006282 1.9e-68 263.8 210 66.2
Zm00001eb256890 Zea mays HOM05D002335 ORTHO05D006282 4.6e-67 259.2 233 57.1
SGA_v2.0_scaffold308G48076 Striga asiatica HOM05D002335 ORTHO05D006282 1.0e-66 258.1 248 60.1
AT2G06005 Arabidopsis thaliana HOM05D002335 ORTHO05D006282 3.0e-66 256.5 169 78.7
CARHR192220 Cardamine hirsuta HOM05D002335 ORTHO05D006282 3.0e-66 256.5 179 73.7
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 5.7e-65 252.3 192 69.3
Aa31LG1G14100 Aethionema arabicum HOM05D002335 ORTHO05D006282 4.8e-64 249.2 280 52.5
Nitab4.5_0000073g0170 Nicotiana tabacum HOM05D002335 ORTHO05D006282 8.2e-64 248.4 283 53.4
Rhsim03G0227400 Rhododendron simsii HOM05D002335 ORTHO05D005129 8.2e-64 248.4 287 52.3
Psat1g134320 Pisum sativum HOM05D002335 ORTHO05D006282 2.0e-62 243.8 149 83.9
vmacro06343 Vaccinium macrocarpon HOM05D002335 ORTHO05D006282 2.6e-62 243.4 286 52.8
HPP92_004366 Vanilla planifolia HOM05D002335 ORTHO05D006282 7.2e-60 235.3 226 55.8
Sc18g0002560 Simmondsia chinensis HOM05D002335 ORTHO05D006282 7.4e-57 225.3 148 77.7
SEGI_06962 Sequoiadendron giganteum HOM05D002335 ORTHO05D006282 1.4e-55 221.1 232 51.3
Nitab4.5_0009436g0040 Nicotiana tabacum HOM05D002335 ORTHO05D006282 1.0e-53 214.9 291 47.8
SHI23809 Sapria himalayana HOM05D002335 ORTHO05D006282 6.5e-53 212.2 144 75.0
Actinidia38482 Actinidia chinensis HOM05D002335 ORTHO05D006282 7.2e-52 208.8 148 71.6
MD02G1091600 Malus domestica HOM05D002335 ORTHO05D006282 6.1e-51 205.7 145 69.7
CAN.G404.48 Capsicum annuum HOM05D002335 ORTHO05D006282 5.1e-50 202.6 183 61.7
Peaxi162Scf00127g01814 Petunia axillaris HOM05D002335 ORTHO05D006282 4.8e-48 196.1 186 61.8
FAN23G1616 Fragaria x ananassa HOM05D002335 ORTHO05D006282 9.7e-41 171.8 102 83.3
Nitab4.5_0000343g0220 Nicotiana tabacum HOM05D002335 ORTHO05D006282 9.7e-41 171.8 129 69.8
Pp3c2_6470 Physcomitrium patens HOM05D002335 ORTHO05D006282 1.5e-36 157.9 227 40.1
CDE02G0868 Ceratophyllum demersum HOM05D002335 ORTHO05D006282 7.2e-36 155.6 107 72.0
Lj7C687T14 Lonicera japonica HOM05D002335 ORTHO05D006282 1.4e-34 151.4 142 58.5
Mapoly0011s0025 Marchantia polymorpha HOM05D002335 ORTHO05D006282 1.8e-31 141.0 254 35.8
Pp3c22_13730 Physcomitrium patens HOM05D002335 ORTHO05D006282 4.1e-31 139.8 237 39.2
Solyc07g041890.1 Solanum lycopersicum HOM05D002335 ORTHO05D006282 3.6e-27 126.7 178 47.8
DCAR_028335 Daucus carota HOM05D002335 ORTHO05D006282 9.8e-25 118.6 71 81.7
Oeu031390.1 Olea europaea HOM05D002335 ORTHO05D006282 3.7e-16 90.1 50 88.0
arahy.Tifrunner.gnm1.ann1.HK8DFN Arachis hypogaea HOM05D002335 ORTHO05D006282 5.4e-15 86.3 99 47.5
Oeu011491.2 Olea europaea HOM05D002335 ORTHO05D006282 2.9e-13 80.5 78 55.1
AagrBONN_evm.TU.Sc2ySwM_344.5493 Anthoceros agrestis HOM05D002335 ORTHO05D006282 2.1e-11 74.3 239 27.2
SMO358G0254 Selaginella moellendorffii HOM05D002335 ORTHO05D006282 5.8e-09 66.2 86 46.5
FvH4_1g08700 Fragaria vesca HOM05D000069 ORTHO05D021424 4.1e-07 60.1 44 61.4
arahy.Tifrunner.gnm1.ann1.S4WZ34 Arachis hypogaea HOM05D000237 ORTHO05D017465 7.0e-07 59.3 57 49.1
Lalb_Chr07g0181181 Lupinus albus HOM05D002335 ORTHO05D006282 1.6e-06 58.2 34 79.4


User provided reference genes

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