Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc28.13 Carica papaya HOM05D003667 ORTHO05D004397 2.3e-117 425.6 225 100.0
Thecc.05G244000 Theobroma cacao HOM05D003667 ORTHO05D004397 7.5e-84 314.3 222 73.4
COL.COLO4_28620 Corchorus olitorius HOM05D003667 ORTHO05D004397 6.4e-83 311.2 222 73.0
Duzib106G0749 Durio zibethinus HOM05D003667 ORTHO05D004397 3.2e-82 308.9 222 71.6
Manes.09G137700 Manihot esculenta HOM05D003667 ORTHO05D004397 6.0e-81 304.7 221 71.9
TWI38G1994 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 6.0e-81 304.7 226 70.8
CsaV3_4G012110 Cucumis sativus L. HOM05D003667 ORTHO05D004397 7.8e-81 304.3 224 71.0
Atru.chr2.1481 Acer truncatum HOM05D003667 ORTHO05D004397 1.0e-80 303.9 222 71.2
Gohir.A11G231200 Gossypium hirsutum HOM05D003667 ORTHO05D004397 1.3e-80 303.5 224 71.0
Sabra13G0056100 Salix brachista HOM05D003667 ORTHO05D004397 1.3e-80 303.5 228 70.2
Gorai.007G256800 Gossypium raimondii HOM05D003667 ORTHO05D004397 1.7e-80 303.1 224 70.5
Gohir.D11G242600 Gossypium hirsutum HOM05D003667 ORTHO05D004397 2.3e-80 302.8 224 70.1
MELO3C008823.2 Cucumis melo HOM05D003667 ORTHO05D004397 3.9e-80 302.0 224 70.1
Ciclev10022078m.g Citrus clementina HOM05D003667 ORTHO05D004397 1.1e-79 300.4 221 71.9
Sed0010728 Sechium edule HOM05D003667 ORTHO05D004397 1.5e-79 300.1 220 70.0
CANSAT78G1932 Cannabis sativa HOM05D003667 ORTHO05D004397 2.5e-79 299.3 224 69.2
AL4G33130 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 4.3e-79 298.5 219 70.8
ClCG04G005470 Citrullus lanatus HOM05D003667 ORTHO05D004397 5.6e-79 298.1 224 69.2
Potri.013G062900 Populus trichocarpa HOM05D003667 ORTHO05D004397 1.6e-78 296.6 228 70.2
Carub.0004s1876 Capsella rubella HOM05D003667 ORTHO05D004397 2.1e-78 296.2 219 70.3
TWI38G1198 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 2.1e-78 296.2 223 69.5
AT2G36900 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 4.7e-78 295.0 218 70.6
Thhalv10017208m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 6.2e-78 294.7 219 68.9
Hma1.2p1_0106F.1_g051140 Hydrangea macrophylla HOM05D003667 ORTHO05D004397 6.2e-78 294.7 225 68.0
RcHm_v2.0_Chr5g0045181 Rosa chinensis HOM05D003667 ORTHO05D004397 8.1e-78 294.3 218 67.9
Lj2A112G40 Lonicera japonica HOM05D003667 ORTHO05D004397 1.1e-77 293.9 219 69.4
FAN11G0144 Fragaria x ananassa HOM05D003667 ORTHO05D004397 2.3e-77 292.7 219 67.1
ClCG02G007830 Citrullus lanatus HOM05D003667 ORTHO05D004397 3.1e-77 292.4 220 69.5
Sp4g19200 Schrenkiella parvula HOM05D003667 ORTHO05D004397 4.0e-77 292.0 219 68.5
BcaB02g09321 Brassica carinata HOM05D003667 ORTHO05D004397 5.2e-77 291.6 220 67.3
C04p11070 Brassica napus HOM05D003667 ORTHO05D004397 5.2e-77 291.6 219 67.1
BolC4t22755H Brassica oleracea HOM05D003667 ORTHO05D004397 5.2e-77 291.6 219 67.1
FAN25G1089 Fragaria x ananassa HOM05D003667 ORTHO05D004397 5.2e-77 291.6 219 66.7
CARHR131380 Cardamine hirsuta HOM05D003667 ORTHO05D004397 6.8e-77 291.2 221 69.7
FvH4_3g25040 Fragaria vesca HOM05D003667 ORTHO05D004397 6.8e-77 291.2 219 66.7
THA.LOC104823778 Tarenaya hassleriana HOM05D003667 ORTHO05D004397 8.9e-77 290.8 227 68.3
Eucgr.K01520 Eucalyptus grandis HOM05D003667 ORTHO05D004397 1.5e-76 290.0 232 64.7
A05p08960 Brassica napus HOM05D003667 ORTHO05D004397 2.6e-76 289.3 219 66.7
BraA05t19858Z Brassica rapa HOM05D003667 ORTHO05D004397 3.4e-76 288.9 219 66.7
GSVIVG01029952001 Vitis vinifera HOM05D003667 ORTHO05D004397 3.4e-76 288.9 221 67.9
Actinidia07960 Actinidia chinensis HOM05D003667 ORTHO05D004397 9.9e-76 287.3 230 66.5
FAN21G0540 Fragaria x ananassa HOM05D003667 ORTHO05D004397 9.9e-76 287.3 219 66.2
PGSC0003DMG400018832 Solanum tuberosum HOM05D003667 ORTHO05D004397 9.9e-76 287.3 234 63.7
AL8G24670 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 3.7e-75 285.4 214 70.1
Rhsim13G0206500 Rhododendron simsii HOM05D003667 ORTHO05D004397 6.4e-75 284.6 225 68.4
Solyc07g047720.3 Solanum lycopersicum HOM05D003667 ORTHO05D004397 8.4e-75 284.3 232 63.4
Sopen07g024170 Solanum pennellii HOM05D003667 ORTHO05D004397 1.1e-74 283.9 230 64.3
Actinidia06203 Actinidia chinensis HOM05D003667 ORTHO05D004397 3.2e-74 282.3 230 64.3
Sed0016620 Sechium edule HOM05D003667 ORTHO05D004397 3.2e-74 282.3 218 66.5
Aa31LG6G14320 Aethionema arabicum HOM05D003667 ORTHO05D004397 7.1e-74 281.2 222 66.7
Carub.0008s1055 Capsella rubella HOM05D003667 ORTHO05D004397 7.1e-74 281.2 214 68.2
Phvul.006G027100 Phaseolus vulgaris HOM05D003667 ORTHO05D004397 7.1e-74 281.2 225 67.1
PGSC0003DMG400006127 Solanum tuberosum HOM05D003667 ORTHO05D004397 7.1e-74 281.2 239 61.9
Glyma.08G304700 Glycine max HOM05D003667 ORTHO05D004397 9.2e-74 280.8 228 66.7
MD02G1195300 Malus domestica HOM05D003667 ORTHO05D004397 1.2e-73 280.4 218 67.0
CSS0004374 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 1.6e-73 280.0 228 65.4
AT5G50440 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 2.1e-73 279.6 214 68.7
CSS0013214 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 2.7e-73 279.3 228 64.9
CARHR257860 Cardamine hirsuta HOM05D003667 ORTHO05D004397 2.7e-73 279.3 221 66.5
HanXRQChr07g0197181 Helianthus annuus HOM05D003667 ORTHO05D004397 3.5e-73 278.9 217 65.4
Nn7g37255 Nelumbo nucifera HOM05D003667 ORTHO05D004397 3.5e-73 278.9 218 65.1
TAR623G0153 Trochodendron aralioides HOM05D003667 ORTHO05D004397 1.0e-72 277.3 223 64.1
Thhalv10014611m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 1.3e-72 276.9 221 66.1
Nn6g34578 Nelumbo nucifera HOM05D003667 ORTHO05D004397 1.3e-72 276.9 220 63.6
Nitab4.5_0001774g0040 Nicotiana tabacum HOM05D003667 ORTHO05D004397 1.7e-72 276.6 234 62.4
arahy.Tifrunner.gnm1.ann1.FV18MX Arachis hypogaea HOM05D003667 ORTHO05D004397 3.9e-72 275.4 218 65.6
MSTRG.26557 Avicennia marina HOM05D003667 ORTHO05D004397 8.6e-72 274.2 230 63.5
Prupe.2G153200 Prunus persica HOM05D003667 ORTHO05D004397 1.5e-71 273.5 218 65.1
arahy.Tifrunner.gnm1.ann1.7QGR70 Arachis hypogaea HOM05D003667 ORTHO05D004397 2.5e-71 272.7 218 65.1
arahy.Tifrunner.gnm1.ann1.VNW58P Arachis hypogaea HOM05D003667 ORTHO05D004397 5.6e-71 271.6 218 65.1
Nitab4.5_0001741g0020 Nicotiana tabacum HOM05D003667 ORTHO05D004397 9.6e-71 270.8 229 61.1
Medtr3g450200 Medicago truncatula HOM05D003667 ORTHO05D004397 2.1e-70 269.6 228 62.3
CAN.G992.19 Capsicum annuum HOM05D003667 ORTHO05D004397 3.6e-70 268.9 234 61.1
Hund10761 Selenicereus undatus HOM05D003667 ORTHO05D004397 4.7e-70 268.5 225 61.3
VMungo0540G2144 Vigna mungo HOM05D003667 ORTHO05D004397 6.2e-70 268.1 221 65.6
MBI17_g12494_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 8.1e-70 267.7 228 60.1
Migut.L01870 Erythranthe guttata HOM05D003667 ORTHO05D004397 1.4e-69 266.9 233 59.7
Glyma.18G114700 Glycine max HOM05D003667 ORTHO05D004397 1.4e-69 266.9 228 64.9
Oeu035461.1 Olea europaea HOM05D003667 ORTHO05D004397 1.4e-69 266.9 229 59.0
Ca_13917_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 2.4e-69 266.2 228 61.8
Lj2g0005685 Lotus japonicus HOM05D003667 ORTHO05D004397 4.0e-69 265.4 222 63.5
MBI05_g12099_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 1.2e-68 263.8 215 64.2
Psat5g209680 Pisum sativum HOM05D003667 ORTHO05D004397 2.0e-68 263.1 228 62.3
Medtr5g090520 Medicago truncatula HOM05D003667 ORTHO05D004397 7.6e-68 261.2 222 63.1
TPR.G8769 Trifolium pratense HOM05D003667 ORTHO05D004397 7.6e-68 261.2 223 63.2
Aqoxy1G00535 Aquilegia oxysepala HOM05D003667 ORTHO05D004397 1.3e-67 260.4 224 59.4
CiPaw.03G011100 Carya illinoinensis HOM05D003667 ORTHO05D004397 1.7e-67 260.0 219 64.8
PSO170G5262 Papaver somniferum HOM05D003667 ORTHO05D004397 8.4e-67 257.7 225 57.3
PSO541G6155 Papaver somniferum HOM05D003667 ORTHO05D004397 2.4e-66 256.1 216 58.8
TPR.G14738 Trifolium pratense HOM05D003667 ORTHO05D004397 2.4e-66 256.1 225 61.3
Lalb_Chr17g0348151 Lupinus albus HOM05D003667 ORTHO05D004397 4.2e-66 255.4 218 62.4
CDE10G1021 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 5.4e-66 255.0 224 60.7
PSO357G0141 Papaver somniferum HOM05D003667 ORTHO05D004397 5.4e-66 255.0 225 57.8
PSO675G2224 Papaver somniferum HOM05D003667 ORTHO05D004397 5.4e-66 255.0 216 58.8
Psat2g018160 Pisum sativum HOM05D003667 ORTHO05D004397 7.1e-66 254.6 223 61.4
Haze_14026 Corylus avellana HOM05D003667 ORTHO05D004397 1.2e-65 253.8 217 64.1
Ca_06238_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 1.6e-65 253.4 223 62.3
SGA_v2.0_scaffold392G50657 Striga asiatica HOM05D003667 ORTHO05D004397 5.1e-64 248.4 258 54.3
Cc03_g11050 Coffea canephora HOM05D003667 ORTHO05D004397 8.7e-64 247.7 222 59.0
Zm00001eb052810 Zea mays HOM05D003667 ORTHO05D004397 1.9e-63 246.5 234 56.0
Peaxi162Scf00776g00027 Petunia axillaris HOM05D003667 ORTHO05D004397 7.3e-63 244.6 213 62.4
unitig_8.g4943 Utricularia gibba HOM05D003667 ORTHO05D004397 7.3e-63 244.6 226 57.1
SGA_v2.0_scaffold41G15803 Striga asiatica HOM05D003667 ORTHO05D004397 1.3e-62 243.8 278 51.1
SEGI_40073 Sequoiadendron giganteum HOM05D003667 ORTHO05D004397 2.8e-62 242.7 230 56.1
Os03g0655200 Oryza sativa ssp. japonica HOM05D003667 ORTHO05D004397 1.8e-61 240.0 229 54.1
HPP92_027259 Vanilla planifolia HOM05D003667 ORTHO05D004397 1.3e-59 233.8 184 63.0
HanXRQChr14g0453611 Helianthus annuus HOM05D003667 ORTHO05D004397 1.7e-59 233.4 218 56.9
Mapoly0001s0234 Marchantia polymorpha HOM05D003667 ORTHO05D004397 1.7e-59 233.4 223 55.2
Lsat_1_v5_gn_6_31701 Lactuca sativa HOM05D003667 ORTHO05D004397 1.6e-57 226.9 221 53.4
Lsat_1_v5_gn_2_103600 Lactuca sativa HOM05D003667 ORTHO05D004397 1.7e-56 223.4 223 56.5
BcaC02g11814 Brassica carinata HOM05D003667 ORTHO05D004397 5.1e-56 221.9 161 70.8
DCAR_013483 Daucus carota HOM05D003667 ORTHO05D004397 2.5e-55 219.5 161 70.8
Sc01g0006150 Simmondsia chinensis HOM05D003667 ORTHO05D004397 1.3e-54 217.2 177 64.4
Dinv05568 Davidia involucrata HOM05D003667 ORTHO05D004397 8.1e-54 214.5 173 63.0
SMO358G0442 Selaginella moellendorffii HOM05D003667 ORTHO05D004397 8.1e-54 214.5 226 50.4
Pp3c7_13000 Physcomitrium patens HOM05D003667 ORTHO05D004397 1.2e-52 210.7 246 46.7
AUR62008662 Chenopodium quinoa HOM05D003667 ORTHO05D004397 3.4e-52 209.1 219 52.5
Prupe.7G022400 Prunus persica HOM05D003667 ORTHO05D004397 7.6e-52 208.0 161 67.7
Pp3c11_11980 Physcomitrium patens HOM05D003667 ORTHO05D004397 6.4e-51 204.9 241 45.6
Ah.02g128310 Amaranthus hybridus HOM05D003667 ORTHO05D004397 1.8e-48 196.8 171 58.5
EL10Ac7g17477 Beta vulgaris HOM05D003667 ORTHO05D004397 2.3e-48 196.4 223 51.1
CiPaw.04G007600 Carya illinoinensis HOM05D003667 ORTHO05D004397 6.7e-48 194.9 161 67.7
Lj6g0022641 Lotus japonicus HOM05D003667 ORTHO05D004397 6.7e-48 194.9 154 66.9
arahy.Tifrunner.gnm1.ann1.B982CP Arachis hypogaea HOM05D003667 ORTHO05D004397 8.7e-48 194.5 220 52.3
ECA238G3478 Erigeron canadensis HOM05D003667 ORTHO05D004397 4.8e-46 188.7 220 47.3
Rhsim02G0195900 Rhododendron simsii HOM05D003667 ORTHO05D004397 6.9e-45 184.9 141 70.9
MSTRG.10431 Avicennia marina HOM05D003667 ORTHO05D004397 4.2e-42 175.6 143 65.7
Cre12.g554200 Chlamydomonas reinhardtii HOM05D003667 ORTHO05D004397 5.7e-39 165.2 221 45.7
unitig_578.g16057 Utricularia gibba HOM05D003667 ORTHO05D004397 6.9e-37 158.3 202 47.0
MCO05G601 Micromonas commoda HOM05D003667 ORTHO05D004397 1.2e-36 157.5 217 41.9
CDE10G1036 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 3.4e-36 156.0 224 42.0
Nitab4.5_0001701g0060 Nicotiana tabacum HOM05D003667 ORTHO05D004397 5.9e-36 155.2 218 44.5
AagrBONN_evm.TU.Sc2ySwM_117.3822 Anthoceros agrestis HOM05D003667 ORTHO05D004397 1.7e-35 153.7 188 46.3
Dinv25059 Davidia involucrata HOM05D003667 ORTHO05D004397 1.7e-35 153.7 145 55.9
BcaC02g10601 Brassica carinata HOM05D003667 ORTHO05D004397 2.9e-35 152.9 187 49.2
AagrBONN_evm.TU.Sc2ySwM_362.869 Anthoceros agrestis HOM05D003667 ORTHO05D004397 8.4e-35 151.4 194 44.3
Solyc05g040100.4 Solanum lycopersicum HOM05D003667 ORTHO05D004397 6.1e-33 145.2 187 47.1
Lalb_Chr10g0106501 Lupinus albus HOM05D003667 ORTHO05D004397 1.3e-32 144.1 118 67.8
Haze_20440 Corylus avellana HOM05D003667 ORTHO05D004397 1.8e-32 143.7 118 67.8
Oeu003870.1 Olea europaea HOM05D003667 ORTHO05D004397 6.7e-32 141.7 126 62.7
Cfa017699 Carpinus fangiana HOM05D003667 ORTHO05D004397 5.7e-31 138.7 118 66.1
Oeu063104.1 Olea europaea HOM05D003667 ORTHO05D004397 1.3e-30 137.5 235 39.1
PRCOL_00002098 Prasinoderma coloniale HOM05D003667 ORTHO05D004397 1.1e-29 134.4 215 37.7
CSS0044789 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 1.7e-27 127.1 141 53.2
Actinidia03933 Actinidia chinensis HOM05D003667 ORTHO05D004397 1.9e-26 123.6 152 49.3
AUR62033108 Chenopodium quinoa HOM05D003667 ORTHO05D004397 3.3e-23 112.8 90 64.4
AagrBONN_evm.TU.Sc2ySwM_368.3326 Anthoceros agrestis HOM05D003667 ORTHO05D004397 2.8e-22 109.8 182 37.9
arahy.Tifrunner.gnm1.ann1.K13S6W Arachis hypogaea HOM05D004599 ORTHO05D005564 6.3e-22 108.6 137 45.3
QL07p048797 Quercus lobata HOM05D000002 ORTHO05D000001 3.1e-21 106.3 173 45.7
BcaB06g28959 Brassica carinata HOM05D003667 ORTHO05D004397 1.5e-20 104.0 107 57.0
arahy.Tifrunner.gnm1.ann1.835HL2 Arachis hypogaea HOM05D004313 ORTHO05D004397 3.4e-20 102.8 89 57.3
CAN.G1036.8 Capsicum annuum HOM05D003667 ORTHO05D004397 5.9e-20 102.1 142 43.7
C04p25660 Brassica napus HOM05D003667 ORTHO05D004397 7.7e-20 101.7 202 35.6
C05p50890 Brassica napus HOM05D003667 ORTHO05D004397 7.7e-20 101.7 202 35.6
Glyma.02G282800 Glycine max HOM05D003667 ORTHO05D004397 2.9e-19 99.8 142 47.9
Rhsim02G0194700 Rhododendron simsii HOM05D003667 ORTHO05D004397 3.8e-19 99.4 83 61.4
Rhsim02G0195800 Rhododendron simsii HOM05D003667 ORTHO05D004397 3.8e-19 99.4 83 61.4
CBR_g20321 Chara braunii HOM05D003667 ORTHO05D004397 6.5e-19 98.6 86 58.1
CSS0038188 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 1.9e-18 97.1 81 61.7
Actinidia37807 Actinidia chinensis HOM05D003667 ORTHO05D004397 9.4e-18 94.7 173 37.6
BNapus_Darmor_BZH_scaffold_271p00010 Brassica napus HOM05D003667 ORTHO05D004397 1.8e-16 90.5 189 34.9
arahy.Tifrunner.gnm1.ann1.SJAT5A Arachis hypogaea HOM05D003667 ORTHO05D003672 2.3e-16 90.1 89 53.9
arahy.Tifrunner.gnm1.ann1.SS7A45 Arachis hypogaea HOM05D000726 ORTHO05D004397 2.0e-15 87.0 95 50.5
Ah.08g213160 Amaranthus hybridus HOM05D003667 ORTHO05D004397 2.6e-15 86.7 70 62.9
arahy.Tifrunner.gnm1.ann1.X6I371 Arachis hypogaea HOM05D003667 ORTHO05D004397 1.3e-14 84.3 74 62.2
Nitab4.5_0002669g0010 Nicotiana tabacum HOM05D003667 ORTHO05D004397 1.3e-14 84.3 124 41.1
Ah.08g213170 Amaranthus hybridus HOM05D003667 ORTHO05D004397 1.1e-13 81.3 84 46.4
BolC4t28047H Brassica oleracea HOM05D003667 ORTHO05D004397 1.4e-13 80.9 51 78.4
FAN16G1288 Fragaria x ananassa HOM05D003667 ORTHO05D004397 1.8e-13 80.5 53 75.5
BraA04t18306Z Brassica rapa HOM05D003667 ORTHO05D004397 2.4e-13 80.1 50 80.0
A04p28220 Brassica napus HOM05D003667 ORTHO05D004397 1.2e-12 77.8 51 76.5
C04p65580 Brassica napus HOM05D003667 ORTHO05D004397 1.2e-12 77.8 51 76.5
Lalb_Chr10g0106511 Lupinus albus HOM05D003667 ORTHO05D004397 3.5e-12 76.3 79 49.4
VMungo0720G0063 Vigna mungo HOM05D003667 ORTHO05D004397 3.5e-12 76.3 80 48.8
COL.COLO4_28622 Corchorus olitorius HOM05D003667 ORTHO05D004397 5.0e-11 72.4 77 55.8
TPR.G36075 Trifolium pratense HOM05D003667 ORTHO05D004397 1.1e-10 71.2 50 72.0
AUR62033107 Chenopodium quinoa HOM05D003667 ORTHO05D004397 5.5e-10 68.9 50 72.0
Solyc05g040090.1 Solanum lycopersicum HOM05D003667 ORTHO05D004397 2.7e-09 66.6 85 43.5
FvH4_3g32534 Fragaria vesca HOM05D003667 ORTHO05D004397 4.7e-09 65.9 87 47.1
HanXRQChr04g0115761 Helianthus annuus HOM05D003667 ORTHO05D004397 1.8e-08 63.9 52 61.5


User provided reference genes

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