Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc28.12 Carica papaya HOM05D005557 ORTHO05D006748 9.6e-167 590.1 302 100.0
Potri.006G139800 Populus trichocarpa HOM05D005557 ORTHO05D006748 5.3e-109 398.3 316 67.1
Thecc.08G180200 Theobroma cacao HOM05D005557 ORTHO05D006748 4.5e-108 395.2 303 69.3
Ciclev10009013m.g Citrus clementina HOM05D005557 ORTHO05D006748 1.0e-107 394.0 309 70.6
Atru.chr7.1734 Acer truncatum HOM05D005557 ORTHO05D006748 2.7e-105 386.0 311 68.5
Gohir.A06G078200 Gossypium hirsutum HOM05D005557 ORTHO05D006748 3.6e-105 385.6 307 67.8
Gorai.010G090300 Gossypium raimondii HOM05D005557 ORTHO05D006748 1.4e-104 383.6 314 67.5
Thhalv10008278m.g Eutrema salsugineum HOM05D005557 ORTHO05D006748 4.0e-104 382.1 303 66.0
Manes.03G042000 Manihot esculenta HOM05D005557 ORTHO05D006748 2.0e-103 379.8 321 63.9
THA.LOC104815688 Tarenaya hassleriana HOM05D005557 ORTHO05D006748 2.6e-103 379.4 303 66.7
Aa31LG7G3880 Aethionema arabicum HOM05D005557 ORTHO05D006748 5.7e-103 378.3 301 67.1
TWI32G1325 Tripterygium wilfordii HOM05D005557 ORTHO05D006748 5.7e-103 378.3 312 66.0
CARHR019740 Cardamine hirsuta HOM05D005557 ORTHO05D006748 4.8e-102 375.2 301 64.5
Duzib168G0027 Durio zibethinus HOM05D005557 ORTHO05D006748 6.3e-102 374.8 309 66.3
AT1G19140 Arabidopsis thaliana HOM05D005557 ORTHO05D006748 1.4e-101 373.6 306 64.4
Sabra06G0109200 Salix brachista HOM05D005557 ORTHO05D006748 2.4e-101 372.9 316 64.2
RcHm_v2.0_Chr1g0332351 Rosa chinensis HOM05D005557 ORTHO05D006748 7.0e-101 371.3 301 66.4
FvH4_7g05500 Fragaria vesca HOM05D005557 ORTHO05D006748 1.2e-100 370.5 305 65.9
FAN10G4084 Fragaria x ananassa HOM05D005557 ORTHO05D006748 1.6e-100 370.2 304 65.5
FAN01G0749 Fragaria x ananassa HOM05D005557 ORTHO05D006748 2.0e-100 369.8 305 65.6
TWI63G1120 Tripterygium wilfordii HOM05D005557 ORTHO05D006748 4.5e-100 368.6 316 63.3
Sp1g17050 Schrenkiella parvula HOM05D005557 ORTHO05D006748 5.9e-100 368.2 307 62.5
AL1G31720 Arabidopsis lyrata HOM05D005557 ORTHO05D006748 7.7e-100 367.9 306 63.7
FAN03G2003 Fragaria x ananassa HOM05D005557 ORTHO05D006748 1.0e-99 367.5 305 65.2
Carub.0001s1877 Capsella rubella HOM05D005557 ORTHO05D006748 1.3e-99 367.1 310 62.9
Duzib187G0437 Durio zibethinus HOM05D005557 ORTHO05D006748 1.3e-99 367.1 302 65.2
QL11p001232 Quercus lobata HOM05D005557 ORTHO05D006748 2.9e-99 365.9 306 65.7
Cfa002966 Carpinus fangiana HOM05D000173 ORTHO05D006748 3.8e-99 365.5 313 64.9
CiPaw.03G203700 Carya illinoinensis HOM05D005557 ORTHO05D006748 1.9e-98 363.2 307 63.8
BcaB07g31927 Brassica carinata HOM05D005557 ORTHO05D006748 2.5e-98 362.8 305 63.3
BcaC07g38981 Brassica carinata HOM05D005557 ORTHO05D006748 5.5e-98 361.7 300 63.0
Dinv42413 Davidia involucrata HOM05D005557 ORTHO05D006748 2.7e-97 359.4 310 64.5
BolC5t30454H Brassica oleracea HOM05D005557 ORTHO05D006748 6.1e-97 358.2 303 62.7
GSVIVG01015048001 Vitis vinifera HOM05D005557 ORTHO05D006748 8.0e-97 357.8 220 79.5
BraA08t34934Z Brassica rapa HOM05D005557 ORTHO05D006748 1.8e-96 356.7 302 62.3
A06p15270 Brassica napus HOM05D005557 ORTHO05D006748 3.0e-96 355.9 301 63.1
BraA06t24641Z Brassica rapa HOM05D005557 ORTHO05D006748 3.0e-96 355.9 301 63.1
A08p29990 Brassica napus HOM05D005557 ORTHO05D006748 5.2e-96 355.1 301 61.8
Dinv25539 Davidia involucrata HOM05D005557 ORTHO05D006748 6.8e-96 354.8 307 64.8
Actinidia30238 Actinidia chinensis HOM05D005557 ORTHO05D006748 2.0e-95 353.2 312 64.1
SalBow6G3747 Salvia bowleyana HOM05D005557 ORTHO05D006748 2.0e-95 353.2 299 62.9
Prupe.2G075400 Prunus persica HOM05D005557 ORTHO05D006748 2.6e-95 352.8 307 61.9
PGR142G2674 Punica granatum HOM05D005557 ORTHO05D006748 5.7e-95 351.7 308 62.0
Lalb_Chr13g0299361 Lupinus albus HOM05D005557 ORTHO05D006748 7.5e-95 351.3 309 61.8
Gohir.D06G077200 Gossypium hirsutum HOM05D005557 ORTHO05D006748 9.8e-95 350.9 280 68.2
BcaC05g25811 Brassica carinata HOM05D005557 ORTHO05D006748 2.2e-94 349.7 293 62.8
CANSAT56G2230 Cannabis sativa HOM05D005557 ORTHO05D006748 2.2e-94 349.7 300 63.3
FAN10G0153 Fragaria x ananassa HOM05D005557 ORTHO05D006748 2.8e-94 349.4 304 63.5
C05p17510 Brassica napus HOM05D005557 ORTHO05D006748 3.7e-94 349.0 301 61.8
Hma1.2p1_0169F.1_g074410 Hydrangea macrophylla HOM05D005557 ORTHO05D006748 3.7e-94 349.0 238 73.5
MD02G1257100 Malus domestica HOM05D005557 ORTHO05D006748 1.1e-93 347.4 309 62.1
Sopen07g021740 Solanum pennellii HOM05D005557 ORTHO05D006748 1.1e-93 347.4 309 59.5
CSS0017494 Camellia sinensis var. sinensis HOM05D005557 ORTHO05D006748 1.4e-93 347.1 312 61.2
COL.COLO4_18069 Corchorus olitorius HOM05D005557 ORTHO05D006748 1.4e-93 347.1 201 82.6
ClCG03G014930 Citrullus lanatus HOM05D005557 ORTHO05D006748 1.8e-93 346.7 314 60.2
AUR62028302 Chenopodium quinoa HOM05D005557 ORTHO05D006748 2.4e-93 346.3 308 60.4
DCAR_024765 Daucus carota HOM05D005557 ORTHO05D006748 5.4e-93 345.1 303 61.4
Solyc07g042150.3 Solanum lycopersicum HOM05D005557 ORTHO05D006748 9.1e-93 344.4 309 59.2
Sed0003389 Sechium edule HOM05D005557 ORTHO05D006748 1.2e-92 344.0 308 60.4
CsaV3_1G041220 Cucumis sativus L. HOM05D005557 ORTHO05D006748 1.6e-92 343.6 315 60.6
BcaB03g12934 Brassica carinata HOM05D005557 ORTHO05D006748 4.5e-92 342.0 238 70.2
Ca_09310_v3 Cicer arietinum L. HOM05D005557 ORTHO05D006748 1.0e-91 340.9 311 61.1
MD07G1063400 Malus domestica HOM05D005557 ORTHO05D006748 1.0e-91 340.9 309 60.8
TAR626G1135 Trochodendron aralioides HOM05D005557 ORTHO05D006748 1.0e-91 340.9 311 60.8
arahy.Tifrunner.gnm1.ann1.568RE3 Arachis hypogaea HOM05D005557 ORTHO05D006748 1.7e-91 340.1 303 61.1
arahy.Tifrunner.gnm1.ann1.C56SYK Arachis hypogaea HOM05D005557 ORTHO05D006748 1.7e-91 340.1 303 61.4
PGSC0003DMG400016040 Solanum tuberosum HOM05D005557 ORTHO05D006748 1.7e-91 340.1 309 59.9
BolC8t49542H Brassica oleracea HOM05D005557 ORTHO05D006748 5.0e-91 338.6 301 60.1
Lj4g0021187 Lotus japonicus HOM05D005557 ORTHO05D006748 6.5e-91 338.2 316 59.8
Nitab4.5_0000343g0390 Nicotiana tabacum HOM05D005557 ORTHO05D006748 8.5e-91 337.8 311 59.2
Lalb_Chr07g0181281 Lupinus albus HOM05D005557 ORTHO05D006748 1.5e-90 337.0 308 60.1
Peaxi162Scf00880g00018 Petunia axillaris HOM05D005557 ORTHO05D006748 1.5e-90 337.0 300 60.0
C08p19230 Brassica napus HOM05D005557 ORTHO05D006748 1.9e-90 336.7 301 59.8
Migut.J00918 Erythranthe guttata HOM05D005557 ORTHO05D006748 1.9e-90 336.7 302 58.6
Aqoxy3G00735 Aquilegia oxysepala HOM05D005557 ORTHO05D006748 2.5e-90 336.3 311 56.6
Cc06_g12460 Coffea canephora HOM05D005557 ORTHO05D006748 2.5e-90 336.3 309 57.9
Medtr4g125000 Medicago truncatula HOM05D005557 ORTHO05D006748 2.5e-90 336.3 314 59.2
Nitab4.5_0008784g0050 Nicotiana tabacum HOM05D005557 ORTHO05D006748 4.2e-90 335.5 315 59.7
Lj7A689T78 Lonicera japonica HOM05D005557 ORTHO05D006748 9.4e-90 334.3 318 59.1
SGA_v2.0_scaffold31G12665 Striga asiatica HOM05D005557 ORTHO05D006748 1.2e-89 334.0 302 58.3
Glyma.13G111700 Glycine max HOM05D005557 ORTHO05D006748 4.7e-89 332.0 309 58.3
vmacro17121 Vaccinium macrocarpon HOM05D000173 ORTHO05D006748 3.0e-88 329.3 340 56.5
Glyma.17G048000 Glycine max HOM05D005557 ORTHO05D006748 3.4e-87 325.9 302 57.6
CAN.G32.9 Capsicum annuum HOM05D005557 ORTHO05D006748 4.4e-87 325.5 310 57.4
MELO3C015535.2 Cucumis melo HOM05D005557 ORTHO05D006748 5.7e-87 325.1 333 55.0
VMungo1215G1068 Vigna mungo HOM05D005557 ORTHO05D006748 9.8e-87 324.3 295 58.3
Lsat_1_v5_gn_5_139800 Lactuca sativa HOM05D005557 ORTHO05D006748 1.3e-86 323.9 299 58.5
MSTRG.10500 Avicennia marina HOM05D005557 ORTHO05D006748 1.7e-86 323.6 302 57.9
Aqoxy7G00284 Aquilegia oxysepala HOM05D005557 ORTHO05D006748 4.9e-86 322.0 315 56.2
Phvul.003G129500 Phaseolus vulgaris HOM05D005557 ORTHO05D006748 4.9e-86 322.0 306 57.8
Os03g0405100 Oryza sativa ssp. japonica HOM05D005557 ORTHO05D006748 6.3e-86 321.6 217 71.9
PSO386G0114 Papaver somniferum HOM05D005557 ORTHO05D006748 1.6e-84 317.0 234 65.4
CSS0008332 Camellia sinensis var. sinensis HOM05D005557 ORTHO05D006748 7.7e-84 314.7 312 57.7
CANSAT56G3371 Cannabis sativa HOM05D005557 ORTHO05D006748 1.7e-83 313.5 308 58.8
EL10Ac8g19008 Beta vulgaris HOM05D005557 ORTHO05D006748 2.3e-83 313.2 330 54.5
Actinidia39641 Actinidia chinensis HOM05D005557 ORTHO05D006748 5.0e-83 312.0 304 59.9
Eucgr.C00788 Eucalyptus grandis HOM05D005557 ORTHO05D006748 5.0e-83 312.0 341 54.5
Zm00001eb019520 Zea mays HOM05D005557 ORTHO05D006748 5.0e-83 312.0 209 71.8
Rhsim05G0005000 Rhododendron simsii HOM05D000173 ORTHO05D006748 1.1e-82 310.8 298 59.7
SGA_v2.0_scaffold296G47553 Striga asiatica HOM05D005557 ORTHO05D006748 1.1e-82 310.8 323 53.6
BcaB03g12932 Brassica carinata HOM05D005557 ORTHO05D006748 1.9e-82 310.1 303 58.1
ECA234G3626 Erigeron canadensis HOM05D005557 ORTHO05D006748 1.9e-82 310.1 234 64.5
HPP92_013279 Vanilla planifolia HOM05D005557 ORTHO05D006748 4.7e-81 305.4 298 55.7
Sc18g0002770 Simmondsia chinensis HOM05D005557 ORTHO05D006748 8.0e-81 304.7 291 58.8
TPR.G12564 Trifolium pratense HOM05D005557 ORTHO05D006748 2.3e-80 303.1 288 60.1
HanXRQChr12g0354431 Helianthus annuus HOM05D005557 ORTHO05D006748 5.2e-80 302.0 301 55.5
CDE05G0257 Ceratophyllum demersum HOM05D005557 ORTHO05D006748 7.5e-79 298.1 240 58.8
SEGI_32471 Sequoiadendron giganteum HOM05D005557 ORTHO05D006748 2.2e-78 296.6 260 57.7
Hund26090 Selenicereus undatus HOM05D005557 ORTHO05D006748 4.1e-77 292.4 198 70.2
Thecc.09G074000 Theobroma cacao HOM05D005557 ORTHO05D006748 8.0e-73 278.1 322 53.1
TAR624G0952 Trochodendron aralioides HOM05D005557 ORTHO05D006748 1.2e-71 274.2 276 59.1
unitig_85.g27246 Utricularia gibba HOM05D005557 ORTHO05D006748 2.0e-71 273.5 241 57.3
Pp3c26_10620 Physcomitrium patens HOM05D005557 ORTHO05D006748 4.6e-68 262.3 211 56.4
Psat7g057840 Pisum sativum HOM05D005557 ORTHO05D006748 4.6e-68 262.3 256 58.6
MBI13_g00696_MAGBIO Magnolia biondii HOM05D005557 ORTHO05D006748 8.6e-67 258.1 200 65.0
Mapoly0016s0081 Marchantia polymorpha HOM05D005557 ORTHO05D006748 1.8e-64 250.4 235 51.5
ATR1100G017 Amborella trichopoda HOM05D005557 ORTHO05D006748 1.5e-63 247.3 190 67.4
SMO364G0522 Selaginella moellendorffii HOM05D005557 ORTHO05D006748 3.2e-61 239.6 238 50.8
Haze_26037 Corylus avellana HOM05D000173 ORTHO05D000316 2.8e-57 226.5 191 62.3
SHI52085 Sapria himalayana HOM05D005557 ORTHO05D006748 8.4e-46 188.3 144 63.2
AagrBONN_evm.TU.Sc2ySwM_228.5739 Anthoceros agrestis HOM05D005557 ORTHO05D006748 3.2e-45 186.4 166 54.2
AUR62025296 Chenopodium quinoa HOM05D005557 ORTHO05D006748 4.3e-42 176.0 109 76.1
PSO724G0807 Papaver somniferum HOM05D005557 ORTHO05D006748 6.4e-38 162.2 173 51.4
CBR_g19881 Chara braunii HOM05D005557 ORTHO05D006748 4.6e-36 156.0 161 48.4
arahy.Tifrunner.gnm1.ann1.D619LQ Arachis hypogaea HOM05D005557 ORTHO05D006748 2.0e-31 140.6 128 59.4
arahy.Tifrunner.gnm1.ann1.CV9S7K Arachis hypogaea HOM05D005557 ORTHO05D006748 2.6e-31 140.2 83 74.7
arahy.Tifrunner.gnm1.ann1.56M64E Arachis hypogaea HOM05D005557 ORTHO05D006748 3.4e-31 139.8 83 75.9
PRCOL_00004586 Prasinoderma coloniale HOM05D005557 ORTHO05D006748 2.7e-28 130.2 208 33.7
AagrBONN_evm.TU.Sc2ySwM_228.4614 Anthoceros agrestis HOM05D005557 ORTHO05D006748 6.7e-27 125.6 125 50.4
arahy.Tifrunner.gnm1.ann1.67TMSF Arachis hypogaea HOM05D005557 ORTHO05D006748 4.3e-26 122.9 68 79.4
arahy.Tifrunner.gnm1.ann1.WCQ4SR Arachis hypogaea HOM05D005557 ORTHO05D006748 1.1e-24 118.2 83 65.1
Cre06.g269550 Chlamydomonas reinhardtii HOM05D005557 ORTHO05D006748 1.4e-24 117.9 150 36.7
MCO02G393 Micromonas commoda HOM05D005557 ORTHO05D006748 1.2e-20 104.8 199 30.2
Nn1g06537 Nelumbo nucifera HOM05D005557 ORTHO05D006748 1.6e-20 104.4 147 49.0
arahy.Tifrunner.gnm1.ann1.L7J4LP Arachis hypogaea HOM05D005557 ORTHO05D006748 2.4e-16 90.5 53 75.5
Migut.J00920 Erythranthe guttata HOM05D005557 ORTHO05D006748 5.0e-14 82.8 141 41.8
arahy.Tifrunner.gnm1.ann1.HVCV5S Arachis hypogaea HOM05D004618 ORTHO05D005318 1.6e-09 67.8 83 45.8
Migut.J00958 Erythranthe guttata HOM05D005557 ORTHO05D006748 6.3e-09 65.9 133 37.6
C09p50170 Brassica napus HOM05D002376 ORTHO05D004654 8.2e-09 65.5 37 81.1
arahy.Tifrunner.gnm1.ann1.B62L7G Arachis hypogaea HOM05D000992 ORTHO05D001928 1.8e-08 64.3 31 87.1
BraA07t29264Z Brassica rapa HOM05D005557 ORTHO05D027294 9.0e-08 62.0 35 80.0
MBI13_g00695_MAGBIO Magnolia biondii HOM05D005557 ORTHO05D006748 9.0e-08 62.0 139 36.7
arahy.Tifrunner.gnm1.ann1.KDZ9D9 Arachis hypogaea HOM05D005557 ORTHO05D001928 1.3e-06 58.2 28 85.7
Lj2g0003057 Lotus japonicus HOM05D005557 ORTHO05D018814 5.0e-06 56.2 91 42.9


User provided reference genes

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