Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc27.7 Carica papaya HOM05D007882 ORTHO05D009870 7.1e-62 240.4 116 100.0
Ciclev10017073m.g Citrus clementina HOM05D007882 ORTHO05D009870 4.8e-18 94.7 54 83.3
Duzib235G1325 Durio zibethinus HOM05D007882 ORTHO05D009870 1.1e-17 93.6 71 63.4
Manes.17G049100 Manihot esculenta HOM05D007882 ORTHO05D009870 1.8e-17 92.8 56 76.8
CSS0041544 Camellia sinensis var. sinensis HOM05D007882 ORTHO05D009870 5.3e-17 91.3 54 77.8
Manes.16G031800 Manihot esculenta HOM05D007882 ORTHO05D009870 5.3e-17 91.3 54 77.8
QL05p042203 Quercus lobata HOM05D007882 ORTHO05D009870 9.1e-17 90.5 54 77.8
Gohir.A05G159200 Gossypium hirsutum HOM05D007882 ORTHO05D009870 2.7e-16 89.0 56 71.4
Gorai.009G166900 Gossypium raimondii HOM05D007882 ORTHO05D009870 2.7e-16 89.0 56 71.4
Haze_06385 Corylus avellana HOM05D007882 ORTHO05D009870 5.9e-16 87.8 54 74.1
Oeu012151.1 Olea europaea HOM05D007882 ORTHO05D009870 5.9e-16 87.8 64 67.2
Potri.004G048400 Populus trichocarpa HOM05D007882 ORTHO05D009870 7.7e-16 87.4 54 72.2
PGSC0003DMG400031764 Solanum tuberosum HOM05D007882 ORTHO05D009870 7.7e-16 87.4 51 74.5
Gohir.D05G161900 Gossypium hirsutum HOM05D007882 ORTHO05D009870 1.0e-15 87.0 56 69.6
Prupe.4G052300 Prunus persica HOM05D007882 ORTHO05D009870 1.7e-15 86.3 54 72.2
Sabra04G0030400 Salix brachista HOM05D007882 ORTHO05D009870 1.7e-15 86.3 54 70.4
CAN.G529.52 Capsicum annuum HOM05D007882 ORTHO05D009870 2.2e-15 85.9 52 71.2
Dinv40598 Davidia involucrata HOM05D007882 ORTHO05D009870 2.2e-15 85.9 63 65.1
Cc02_g13810 Coffea canephora HOM05D007882 ORTHO05D009870 2.9e-15 85.5 54 72.2
CiPaw.10G052500 Carya illinoinensis HOM05D007882 ORTHO05D009870 3.8e-15 85.1 52 73.1
Nitab4.5_0004359g0010 Nicotiana tabacum HOM05D007882 ORTHO05D009870 3.8e-15 85.1 54 72.2
TWI38G0780 Tripterygium wilfordii HOM05D007882 ORTHO05D009870 3.8e-15 85.1 54 74.1
Atru.chr10.1801 Acer truncatum HOM05D007882 ORTHO05D009870 5.0e-15 84.7 54 74.1
Cfa000524 Carpinus fangiana HOM05D007882 ORTHO05D009870 5.0e-15 84.7 54 72.2
PGR004G2459 Punica granatum HOM05D007882 ORTHO05D009870 6.5e-15 84.3 56 69.6
DCAR_028056 Daucus carota HOM05D007882 ORTHO05D009870 1.5e-14 83.2 53 67.9
MD10G1289500 Malus domestica HOM05D007882 ORTHO05D009870 1.5e-14 83.2 54 75.9
Solyc02g077700.1 Solanum lycopersicum HOM05D007882 ORTHO05D009870 1.5e-14 83.2 57 66.7
COL.COLO4_31420 Corchorus olitorius HOM05D007882 ORTHO05D009870 2.5e-14 82.4 56 66.1
Rhsim02G0134400 Rhododendron simsii HOM05D007882 ORTHO05D009870 2.5e-14 82.4 54 74.1
TAR627G1093 Trochodendron aralioides HOM05D007882 ORTHO05D009870 2.5e-14 82.4 56 64.3
CANSAT35G1953 Cannabis sativa HOM05D007882 ORTHO05D009870 3.2e-14 82.0 54 68.5
Aa31LG9G13760 Aethionema arabicum HOM05D007882 ORTHO05D009870 7.2e-14 80.9 53 69.8
MELO3C007262.2 Cucumis melo HOM05D007882 ORTHO05D009870 9.4e-14 80.5 54 68.5
CsaV3_6G050400 Cucumis sativus L. HOM05D007882 ORTHO05D009870 9.4e-14 80.5 54 68.5
CARHR128020 Cardamine hirsuta HOM05D007882 ORTHO05D009870 1.6e-13 79.7 54 66.7
ClCG00G004760 Citrullus lanatus HOM05D007882 ORTHO05D009870 1.6e-13 79.7 54 68.5
ClCG01G023240 Citrullus lanatus HOM05D007882 ORTHO05D009870 1.6e-13 79.7 54 68.5
Ah.14g089690 Amaranthus hybridus HOM05D007882 ORTHO05D009870 2.1e-13 79.3 54 66.7
Thhalv10017644m.g Eutrema salsugineum HOM05D007882 ORTHO05D009870 2.1e-13 79.3 54 64.8
AT2G33855 Arabidopsis thaliana HOM05D007882 ORTHO05D009870 2.7e-13 79.0 56 66.1
Carub.0004s1556 Capsella rubella HOM05D007882 ORTHO05D009870 2.7e-13 79.0 56 64.3
Sp4g16270 Schrenkiella parvula HOM05D007882 ORTHO05D009870 2.7e-13 79.0 68 55.9
TPR.G789 Trifolium pratense HOM05D007882 ORTHO05D009870 2.7e-13 79.0 54 66.7
Thecc.06G181400 Theobroma cacao HOM05D007882 ORTHO05D009870 3.6e-13 78.6 52 71.2
AL4G29660 Arabidopsis lyrata HOM05D007882 ORTHO05D009870 6.1e-13 77.8 56 62.5
C04p63420 Brassica napus HOM05D007882 ORTHO05D009870 6.1e-13 77.8 54 66.7
BolC4t27817H Brassica oleracea HOM05D007882 ORTHO05D009870 6.1e-13 77.8 54 66.7
SalBow8G2967 Salvia bowleyana HOM05D007882 ORTHO05D009870 8.0e-13 77.4 53 66.0
SalBow8G3626 Salvia bowleyana HOM05D007882 ORTHO05D009870 8.0e-13 77.4 53 66.0
SGA_v2.0_scaffold22G09668 Striga asiatica HOM05D007882 ORTHO05D009870 1.0e-12 77.0 54 64.8
Migut.M01110 Erythranthe guttata HOM05D007882 ORTHO05D009870 1.4e-12 76.6 54 64.8
Nn1g06425 Nelumbo nucifera HOM05D007882 ORTHO05D009870 1.4e-12 76.6 56 66.1
Nitab4.5_0001955g0180 Nicotiana tabacum HOM05D007882 ORTHO05D009870 1.4e-12 76.6 46 69.6
A04p26080 Brassica napus HOM05D007882 ORTHO05D009870 1.8e-12 76.3 54 64.8
BraA04t18110Z Brassica rapa HOM05D007882 ORTHO05D009870 1.8e-12 76.3 54 64.8
Lalb_Chr18g0059401 Lupinus albus HOM05D007882 ORTHO05D009870 1.8e-12 76.3 53 67.9
Sed0022369 Sechium edule HOM05D007882 ORTHO05D009870 1.8e-12 76.3 57 63.2
BcaC02g07777 Brassica carinata HOM05D007882 ORTHO05D009870 5.2e-12 74.7 116 42.2
HanXRQChr01g0014401 Helianthus annuus HOM05D007882 ORTHO05D009870 5.2e-12 74.7 51 70.6
Medtr2g014430 Medicago truncatula HOM05D007882 ORTHO05D009870 8.8e-12 73.9 54 63.0
RcHm_v2.0_Chr5g0009121 Rosa chinensis HOM05D007882 ORTHO05D009870 8.8e-12 73.9 53 67.9
Psat1g202760 Pisum sativum HOM05D007882 ORTHO05D009870 1.2e-11 73.6 54 55.6
Eucgr.D00598 Eucalyptus grandis HOM05D007882 ORTHO05D009870 1.5e-11 73.2 54 63.0
arahy.Tifrunner.gnm1.ann1.CPZJ30 Arachis hypogaea HOM05D007882 ORTHO05D009870 2.0e-11 72.8 54 64.8
FAN21G3311 Fragaria x ananassa HOM05D001455 ORTHO05D001587 5.7e-11 71.2 53 64.2
FvH4_3g08670 Fragaria vesca HOM05D007882 ORTHO05D009870 7.5e-11 70.9 53 64.2
FAN11G2645 Fragaria x ananassa HOM05D007882 ORTHO05D009870 7.5e-11 70.9 53 64.2
FAN16G0532 Fragaria x ananassa HOM05D007882 ORTHO05D009870 7.5e-11 70.9 53 62.3
Lsat_1_v5_gn_4_51820 Lactuca sativa HOM05D000216 ORTHO05D009870 9.8e-11 70.5 69 52.2
Glyma.13G235900 Glycine max HOM05D007882 ORTHO05D009870 1.7e-10 69.7 56 58.9
Lj6g0021640 Lotus japonicus HOM05D007882 ORTHO05D009870 2.8e-10 68.9 49 65.3
unitig_22.g6219 Utricularia gibba HOM05D007882 ORTHO05D009870 4.1e-09 65.1 46 58.7
ATR0789G148 Amborella trichopoda HOM05D007882 ORTHO05D009870 1.6e-08 63.2 55 60.0
QL06p028733 Quercus lobata HOM05D007882 ORTHO05D009870 1.6e-08 63.2 43 67.4
Nn1g04229 Nelumbo nucifera HOM05D007882 ORTHO05D009870 2.7e-08 62.4 49 61.2
PSO210G4689 Papaver somniferum HOM05D007882 ORTHO05D009870 4.5e-08 61.6 53 52.8
Phvul.006G182500 Phaseolus vulgaris HOM05D007882 ORTHO05D009870 1.0e-07 60.5 56 48.2
Aqoxy4G00631 Aquilegia oxysepala HOM05D007882 ORTHO05D009870 1.3e-07 60.1 58 51.7
PSO210G1466 Papaver somniferum HOM05D007882 ORTHO05D009870 5.0e-07 58.2 54 57.4
THA.LOC104820567 Tarenaya hassleriana HOM05D007882 ORTHO05D009870 1.5e-06 56.6 56 53.6


User provided reference genes

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