Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc27.6 Carica papaya HOM05D007447 ORTHO05D009372 1.4e-142 509.6 265 100.0
Thecc.06G181300 Theobroma cacao HOM05D007447 ORTHO05D009372 1.0e-63 247.7 264 50.8
Dinv40599 Davidia involucrata HOM05D007447 ORTHO05D009372 1.3e-63 247.3 271 50.6
Gohir.D10G028300 Gossypium hirsutum HOM05D007447 ORTHO05D009372 5.6e-62 241.9 256 49.2
Gorai.011G030100 Gossypium raimondii HOM05D007447 ORTHO05D009372 1.6e-61 240.4 260 48.1
GSVIVG01021110001 Vitis vinifera HOM05D007447 ORTHO05D009372 2.1e-61 240.0 224 54.9
Atru.chr10.1800 Acer truncatum HOM05D007447 ORTHO05D009372 3.6e-61 239.2 264 50.4
COL.COLO4_31413 Corchorus olitorius HOM05D001455 ORTHO05D001587 1.1e-60 237.7 249 50.2
QL05p042219 Quercus lobata HOM05D007447 ORTHO05D009372 3.8e-58 229.2 239 51.5
CSS0015196 Camellia sinensis var. sinensis HOM05D007447 ORTHO05D009372 4.6e-56 222.2 246 47.6
CiPaw.10G052600 Carya illinoinensis HOM05D007447 ORTHO05D009372 1.7e-55 220.3 226 51.3
Thhalv10008438m.g Eutrema salsugineum HOM05D007447 ORTHO05D009372 1.7e-55 220.3 260 44.6
TAR627G0071 Trochodendron aralioides HOM05D007447 ORTHO05D009372 3.0e-55 219.5 273 46.9
AT1G28410 Arabidopsis thaliana HOM05D007447 ORTHO05D009372 3.3e-54 216.1 259 44.8
Carub.0001s2689 Capsella rubella HOM05D007447 ORTHO05D009372 4.3e-54 215.7 254 45.3
Sp1g24690 Schrenkiella parvula HOM05D007447 ORTHO05D009372 5.6e-54 215.3 264 45.8
PGR042G0911 Punica granatum HOM05D007447 ORTHO05D009372 1.6e-53 213.8 272 44.5
COL.COLO4_14300 Corchorus olitorius HOM05D001061 ORTHO05D006729 2.1e-53 213.4 264 44.7
Nn1g06424 Nelumbo nucifera HOM05D007447 ORTHO05D009372 2.1e-53 213.4 242 50.0
Eucgr.E03244 Eucalyptus grandis HOM05D007447 ORTHO05D009372 3.6e-53 212.6 230 49.1
Manes.16G031900 Manihot esculenta HOM05D007447 ORTHO05D009372 3.6e-53 212.6 267 47.2
AL1G42040 Arabidopsis lyrata HOM05D007447 ORTHO05D009372 2.4e-52 209.9 259 43.2
CARHR027920 Cardamine hirsuta HOM05D007447 ORTHO05D009372 9.9e-51 204.5 260 43.8
Haze_06385 Corylus avellana HOM05D007882 ORTHO05D009870 4.9e-50 202.2 277 44.4
TWI63G0216 Tripterygium wilfordii HOM05D007447 ORTHO05D009372 1.4e-49 200.7 264 42.4
Aqoxy1G02279 Aquilegia oxysepala HOM05D007447 ORTHO05D009372 7.1e-49 198.4 264 41.7
THA.LOC104814436 Tarenaya hassleriana HOM05D007447 ORTHO05D009372 2.1e-48 196.8 255 43.1
Gohir.A05G159100 Gossypium hirsutum HOM05D007447 ORTHO05D009372 1.7e-47 193.7 236 45.3
Cfa000525 Carpinus fangiana HOM05D007447 ORTHO05D009372 2.3e-47 193.4 266 43.6
Ciclev10018161m.g Citrus clementina HOM05D007447 ORTHO05D009372 2.3e-47 193.4 199 50.8
Psat1g202800 Pisum sativum HOM05D007447 ORTHO05D009372 8.7e-47 191.4 264 42.4
VMungo0540G1135 Vigna mungo HOM05D007447 ORTHO05D009372 1.9e-46 190.3 254 42.5
Actinidia07600 Actinidia chinensis HOM05D007447 ORTHO05D009372 7.3e-46 188.3 200 50.5
FvH4_3g08660 Fragaria vesca HOM05D007447 ORTHO05D009372 7.3e-46 188.3 263 42.6
Glyma.13G235800 Glycine max HOM05D007447 ORTHO05D009372 2.1e-45 186.8 265 43.8
MD10G1289400 Malus domestica HOM05D007447 ORTHO05D009372 6.2e-45 185.3 232 45.3
PSO675G5366 Papaver somniferum HOM05D007447 ORTHO05D009372 8.1e-45 184.9 264 43.2
PSO675G8572 Papaver somniferum HOM05D007447 ORTHO05D009372 8.1e-45 184.9 264 43.2
ClCG03G008020 Citrullus lanatus HOM05D007447 ORTHO05D009372 1.1e-44 184.5 260 41.9
Lj6g0005430 Lotus japonicus HOM05D007447 ORTHO05D009372 1.4e-44 184.1 263 44.5
FAN16G2340 Fragaria x ananassa HOM05D007447 ORTHO05D009372 2.4e-44 183.3 235 43.4
FAN21G3311 Fragaria x ananassa HOM05D001455 ORTHO05D001587 4.0e-44 182.6 233 43.3
vmacro15930 Vaccinium macrocarpon HOM05D007447 ORTHO05D009372 4.0e-44 182.6 288 39.2
RcHm_v2.0_Chr5g0009131 Rosa chinensis HOM05D007447 ORTHO05D009372 5.3e-44 182.2 255 41.2
Duzib160G0617 Durio zibethinus HOM05D007447 ORTHO05D009372 2.0e-43 180.3 265 41.5
FAN11G2802 Fragaria x ananassa HOM05D007447 ORTHO05D009372 2.6e-43 179.9 234 45.3
CsaV3_1G012550 Cucumis sativus L. HOM05D007447 ORTHO05D009372 5.8e-43 178.7 262 39.3
Nitab4.5_0001955g0160 Nicotiana tabacum HOM05D007447 ORTHO05D009372 9.9e-43 177.9 273 40.3
Phvul.006G182400 Phaseolus vulgaris HOM05D007447 ORTHO05D009372 1.9e-41 173.7 261 41.4
arahy.Tifrunner.gnm1.ann1.MUCA0D Arachis hypogaea HOM05D007447 ORTHO05D009372 2.4e-41 173.3 235 43.0
arahy.Tifrunner.gnm1.ann1.45S4HY Arachis hypogaea HOM05D007447 ORTHO05D009372 9.3e-41 171.4 230 43.5
Nitab4.5_0004359g0010 Nicotiana tabacum HOM05D007882 ORTHO05D009870 1.2e-40 171.0 267 40.8
Medtr2g014440 Medicago truncatula HOM05D007447 ORTHO05D009372 1.6e-40 170.6 257 41.2
Gohir.A09G104400 Gossypium hirsutum HOM05D007447 ORTHO05D009372 3.5e-40 169.5 207 43.5
BcaC05g26860 Brassica carinata HOM05D007447 ORTHO05D009372 4.6e-40 169.1 260 39.2
Sc17g0005950 Simmondsia chinensis HOM05D007447 ORTHO05D009372 3.0e-39 166.4 261 39.8
Sed0019225 Sechium edule HOM05D007447 ORTHO05D009372 5.1e-39 165.6 259 39.4
BraA09t39273Z Brassica rapa HOM05D007447 ORTHO05D009372 6.7e-39 165.2 213 44.1
MSTRG.14713 Avicennia marina HOM05D007447 ORTHO05D009372 1.9e-38 163.7 236 42.4
A09p37630 Brassica napus HOM05D007447 ORTHO05D009372 4.3e-38 162.5 211 44.1
Hma1.2p1_0558F.1_g178510 Hydrangea macrophylla HOM05D007447 ORTHO05D009372 2.1e-37 160.2 164 50.0
CANSAT35G0297 Cannabis sativa HOM05D007447 ORTHO05D009372 2.8e-37 159.8 237 41.8
Prupe.3G304000 Prunus persica HOM05D007447 ORTHO05D009372 2.4e-36 156.8 238 42.0
BolC5t31458H Brassica oleracea HOM05D007447 ORTHO05D009372 3.1e-36 156.4 272 36.4
TPR.G11645 Trifolium pratense HOM05D007447 ORTHO05D009372 3.1e-36 156.4 167 48.5
C05p27420 Brassica napus HOM05D007447 ORTHO05D009372 4.0e-36 156.0 292 34.9
Aqoxy193s001 Aquilegia oxysepala HOM05D007447 ORTHO05D009372 6.9e-36 155.2 174 46.6
Ca_00359_v3 Cicer arietinum L. HOM05D007447 ORTHO05D009372 6.9e-36 155.2 161 50.9
Solyc02g077690.4 Solanum lycopersicum HOM05D007447 ORTHO05D009372 2.0e-35 153.7 274 35.8
ECA248G3772 Erigeron canadensis HOM05D007447 ORTHO05D009372 5.8e-35 152.1 262 36.6
Lalb_Chr18g0059391 Lupinus albus HOM05D007447 ORTHO05D009372 1.3e-34 151.0 264 39.0
Migut.H01471 Erythranthe guttata HOM05D007447 ORTHO05D009372 2.2e-34 150.2 277 37.2
Gohir.A10G027900 Gossypium hirsutum HOM05D007447 ORTHO05D009372 1.4e-33 147.5 178 48.3
CAN.G529.53 Capsicum annuum HOM05D007447 ORTHO05D009372 2.5e-33 146.7 167 46.7
DCAR_008005 Daucus carota HOM05D007447 ORTHO05D009372 2.1e-32 143.7 210 40.0
HanXRQChr08g0213981 Helianthus annuus HOM05D007447 ORTHO05D009372 2.3e-31 140.2 261 36.0
Hund23805 Selenicereus undatus HOM05D007447 ORTHO05D009372 2.5e-30 136.7 230 36.5
Rhsim02G0134600 Rhododendron simsii HOM05D007447 ORTHO05D009372 9.6e-30 134.8 282 35.5
AUR62014866 Chenopodium quinoa HOM05D007447 ORTHO05D009372 3.7e-29 132.9 246 35.8
Ah.09g237570 Amaranthus hybridus HOM05D007447 ORTHO05D009372 6.2e-29 132.1 231 37.2
Cc02_g13820 Coffea canephora HOM05D007447 ORTHO05D009372 1.4e-28 131.0 215 38.6
unitig_61.g26088 Utricularia gibba HOM05D007447 ORTHO05D009372 4.0e-28 129.4 235 34.9
Sopen02g022590 Solanum pennellii HOM05D007447 ORTHO05D009372 1.3e-26 124.4 237 34.6
Peaxi162Scf00926g00028 Petunia axillaris HOM05D007447 ORTHO05D009372 2.5e-25 120.2 254 31.9
Sabra04G0030400 Salix brachista HOM05D007882 ORTHO05D009870 3.2e-25 119.8 247 34.8
EL10Ac8g20436 Beta vulgaris HOM05D007447 ORTHO05D009372 4.2e-25 119.4 254 32.3
SalBow7G4252 Salvia bowleyana HOM05D007447 ORTHO05D009372 1.8e-23 114.0 204 34.8
SalBow7G4859 Salvia bowleyana HOM05D007447 ORTHO05D009372 1.8e-23 114.0 204 34.8
MELO3C000075.2 Cucumis melo HOM05D007447 ORTHO05D009372 3.0e-23 113.2 163 41.1
Oeu012152.1 Olea europaea HOM05D007447 ORTHO05D009372 8.7e-23 111.7 209 38.3
Lsat_1_v5_gn_1_120761 Lactuca sativa HOM05D007447 ORTHO05D009372 1.5e-19 100.9 181 37.6
MBI06_g04396_MAGBIO Magnolia biondii HOM05D007447 ORTHO05D009372 1.7e-18 97.4 168 35.1
ATR0730G049 Amborella trichopoda HOM05D007447 ORTHO05D009372 1.0e-15 88.2 208 32.7
CDE04G0034 Ceratophyllum demersum HOM05D002561 ORTHO05D006466 5.1e-15 85.9 141 34.8
Os02g0305600 Oryza sativa ssp. japonica HOM05D007447 ORTHO05D009372 5.1e-15 85.9 289 26.0
Zm00001eb203200 Zea mays HOM05D007447 ORTHO05D009372 1.8e-12 77.4 300 27.0
Potri.004G048500 Populus trichocarpa HOM05D007447 ORTHO05D009372 3.1e-12 76.6 102 43.1
Gohir.A01G124600 Gossypium hirsutum HOM05D007447 ORTHO05D009372 3.4e-11 73.2 71 47.9
Gohir.A01G131222 Gossypium hirsutum HOM05D007447 ORTHO05D009372 3.4e-11 73.2 71 47.9
Gohir.A02G158500 Gossypium hirsutum HOM05D007447 ORTHO05D009372 7.7e-11 72.0 70 48.6
AUR62031072 Chenopodium quinoa HOM05D007447 ORTHO05D009372 2.2e-10 70.5 207 28.0
MELO3C027350.2 Cucumis melo HOM05D007447 ORTHO05D009372 8.8e-07 58.5 78 34.6


User provided reference genes

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