Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc27.253 Carica papaya HOM05D004987 ORTHO05D005960 1.0e-229 799.7 388 100.0
Manes.09G081692 Manihot esculenta HOM05D004987 ORTHO05D005960 3.1e-154 548.9 478 60.5
Potri.006G017000 Populus trichocarpa HOM05D004987 ORTHO05D005960 1.2e-153 547.0 482 59.8
GSVIVG01007214001 Vitis vinifera HOM05D004987 ORTHO05D005960 2.0e-153 546.2 479 58.9
Ciclev10015100m.g Citrus clementina HOM05D004987 ORTHO05D005960 6.5e-152 541.2 478 59.4
Thecc.06G237200 Theobroma cacao HOM05D004987 ORTHO05D005960 2.5e-151 539.3 480 58.5
CiPaw.09G105700 Carya illinoinensis HOM05D004987 ORTHO05D005960 1.8e-149 533.1 479 58.2
Gohir.A06G204500 Gossypium hirsutum HOM05D004987 ORTHO05D005960 1.8e-149 533.1 478 58.4
Gorai.010G249200 Gossypium raimondii HOM05D004987 ORTHO05D005960 1.5e-148 530.0 478 57.9
Haze_06979 Corylus avellana HOM05D004987 ORTHO05D005960 4.4e-148 528.5 506 55.5
Gohir.D06G217000 Gossypium hirsutum HOM05D004987 ORTHO05D005960 5.7e-148 528.1 478 57.7
CiPaw.10G079900 Carya illinoinensis HOM05D004987 ORTHO05D005960 9.8e-148 527.3 479 57.0
Duzib235G0100 Durio zibethinus HOM05D004987 ORTHO05D005960 9.8e-148 527.3 479 56.8
TWI38G0401 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 1.1e-146 523.9 476 56.7
TAR626G0553 Trochodendron aralioides HOM05D004987 ORTHO05D005960 1.4e-146 523.5 484 57.4
CANSAT01G2438 Cannabis sativa HOM05D004987 ORTHO05D005960 1.8e-146 523.1 481 57.6
CsaV3_1G015810 Cucumis sativus L. HOM05D004987 ORTHO05D005960 3.1e-146 522.3 480 56.7
Dinv01708 Davidia involucrata HOM05D004987 ORTHO05D005960 3.1e-146 522.3 491 57.4
Atru.chr3.1439 Acer truncatum HOM05D004987 ORTHO05D005960 4.1e-146 521.9 478 57.3
TAR627G0360 Trochodendron aralioides HOM05D004987 ORTHO05D005960 9.1e-146 520.8 485 57.3
QL05p068327 Quercus lobata HOM05D004987 ORTHO05D005960 2.7e-145 519.2 478 56.5
QL05p068818 Quercus lobata HOM05D004987 ORTHO05D005960 2.7e-145 519.2 478 56.5
Sed0000076 Sechium edule HOM05D004987 ORTHO05D005960 3.5e-145 518.8 479 56.8
Hma1.2p1_0657F.1_g196910 Hydrangea macrophylla HOM05D004987 ORTHO05D005960 7.7e-145 517.7 478 57.7
Lj2C259G8 Lonicera japonica HOM05D004987 ORTHO05D005960 7.7e-145 517.7 459 59.5
ClCG01G010690 Citrullus lanatus HOM05D004987 ORTHO05D005960 1.3e-144 516.9 479 55.5
MD00G1058500 Malus domestica HOM05D004987 ORTHO05D005960 9.5e-143 510.8 483 55.3
Glyma.07G266900 Glycine max HOM05D004987 ORTHO05D005960 6.1e-142 508.1 480 56.5
vmacro03626 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 1.0e-141 507.3 473 55.6
Prupe.4G007100 Prunus persica HOM05D004987 ORTHO05D005960 1.4e-141 506.9 480 55.4
Glyma.17G007300 Glycine max HOM05D004987 ORTHO05D005960 1.8e-141 506.5 480 56.5
Lalb_Chr20g0119411 Lupinus albus HOM05D004987 ORTHO05D005960 2.3e-141 506.1 480 54.4
VMungo1215G0994 Vigna mungo HOM05D004987 ORTHO05D005960 8.9e-141 504.2 480 56.2
arahy.Tifrunner.gnm1.ann1.158NIU Arachis hypogaea HOM05D004987 ORTHO05D005960 2.0e-140 503.1 484 55.2
Phvul.003G085301 Phaseolus vulgaris HOM05D004987 ORTHO05D005960 2.0e-140 503.1 480 56.0
PGR004G2886 Punica granatum HOM05D004987 ORTHO05D005960 2.0e-140 503.1 480 54.2
arahy.Tifrunner.gnm1.ann1.K2RD5P Arachis hypogaea HOM05D004987 ORTHO05D005960 7.5e-140 501.1 484 55.0
Actinidia26840 Actinidia chinensis HOM05D004987 ORTHO05D005960 9.8e-140 500.7 481 54.7
Lj4g0022097 Lotus japonicus HOM05D004987 ORTHO05D005960 1.3e-139 500.4 480 55.4
Psat5g004720 Pisum sativum HOM05D004987 ORTHO05D005960 3.7e-139 498.8 476 55.3
arahy.Tifrunner.gnm1.ann1.URKQ8K Arachis hypogaea HOM05D004987 ORTHO05D005960 4.9e-139 498.4 496 54.0
Aa31LG2G12480 Aethionema arabicum HOM05D004987 ORTHO05D005960 5.4e-138 495.0 478 53.3
CSS0019037 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 7.0e-138 494.6 483 54.2
CSS0028023 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 9.2e-138 494.2 484 54.1
MBI19_g25589_MAGBIO Magnolia biondii HOM05D004987 ORTHO05D005960 9.2e-138 494.2 481 55.1
Nn1g07472 Nelumbo nucifera HOM05D004987 ORTHO05D005960 1.6e-137 493.4 481 53.4
Carub.0007s2509 Capsella rubella HOM05D004987 ORTHO05D005960 2.0e-137 493.0 479 53.7
Ca_15341_v3 Cicer arietinum L. HOM05D004987 ORTHO05D005960 2.7e-137 492.7 479 54.3
MELO3C025535.2 Cucumis melo HOM05D004987 ORTHO05D005960 3.5e-137 492.3 299 76.6
Medtr3g117360 Medicago truncatula HOM05D004987 ORTHO05D005960 3.5e-137 492.3 480 54.2
MSTRG.13111 Avicennia marina HOM05D004987 ORTHO05D005960 5.9e-137 491.5 470 55.5
Sc13g0000910 Simmondsia chinensis HOM05D004987 ORTHO05D005960 1.3e-136 490.3 299 75.9
CSS0011246 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 2.3e-136 489.6 483 54.0
RcHm_v2.0_Chr5g0000801 Rosa chinensis HOM05D004987 ORTHO05D005960 2.9e-136 489.2 479 53.7
AL7G38570 Arabidopsis lyrata HOM05D004987 ORTHO05D005960 6.6e-136 488.0 479 52.8
Nitab4.5_0000318g0050 Nicotiana tabacum HOM05D004987 ORTHO05D005960 4.3e-135 485.3 481 53.2
arahy.Tifrunner.gnm1.ann1.016YCC Arachis hypogaea HOM05D004987 ORTHO05D005960 5.6e-135 485.0 516 51.2
Rhsim13G0142900 Rhododendron simsii HOM05D004987 ORTHO05D005960 5.6e-135 485.0 299 74.9
AT4G16440 Arabidopsis thaliana HOM05D004987 ORTHO05D005960 7.3e-135 484.6 479 52.2
Peaxi162Scf00488g00925 Petunia axillaris HOM05D004987 ORTHO05D005960 9.5e-135 484.2 483 53.2
CDE07G0546 Ceratophyllum demersum HOM05D004987 ORTHO05D005960 3.6e-134 482.3 473 53.9
HanXRQChr01g0004771 Helianthus annuus HOM05D004987 ORTHO05D005960 3.6e-134 482.3 483 53.4
PGSC0003DMG400025463 Solanum tuberosum HOM05D004987 ORTHO05D005960 1.8e-133 479.9 484 53.3
FvH4_3g00590 Fragaria vesca HOM05D004987 ORTHO05D005960 2.3e-133 479.6 477 52.6
Sabra06G0012100 Salix brachista HOM05D004987 ORTHO05D005960 2.3e-133 479.6 515 52.4
Sp7g14970 Schrenkiella parvula HOM05D004987 ORTHO05D005960 4.0e-133 478.8 480 52.9
Sopen08g019660 Solanum pennellii HOM05D004987 ORTHO05D005960 4.0e-133 478.8 480 54.6
ECA248G1395 Erigeron canadensis HOM05D004987 ORTHO05D005960 5.2e-133 478.4 299 74.2
FAN25G3815 Fragaria x ananassa HOM05D004987 ORTHO05D005960 5.2e-133 478.4 477 52.4
Solyc08g065990.3 Solanum lycopersicum HOM05D004987 ORTHO05D005960 8.9e-133 477.6 480 53.5
Thhalv10025117m.g Eutrema salsugineum HOM05D004987 ORTHO05D005960 1.5e-132 476.9 480 53.1
AUR62018393 Chenopodium quinoa HOM05D004987 ORTHO05D005960 1.7e-131 473.4 301 74.4
Lsat_1_v5_gn_6_62021 Lactuca sativa HOM05D004987 ORTHO05D005960 1.7e-131 473.4 484 52.3
BcaNung00197 Brassica carinata HOM05D004987 ORTHO05D005960 2.2e-131 473.0 480 51.9
CAN.G9.5 Capsicum annuum HOM05D004987 ORTHO05D005960 2.9e-131 472.6 484 52.9
Oeu057036.1 Olea europaea HOM05D004987 ORTHO05D005960 1.4e-130 470.3 461 54.9
BcaC09g50343 Brassica carinata HOM05D004987 ORTHO05D005960 1.9e-130 469.9 480 51.5
BolC1t02590H Brassica oleracea HOM05D004987 ORTHO05D005960 1.9e-130 469.9 480 51.5
C01p26430 Brassica napus HOM05D004987 ORTHO05D005960 2.4e-130 469.5 480 51.5
CARHR222790 Cardamine hirsuta HOM05D004987 ORTHO05D005960 2.4e-130 469.5 480 50.8
Sabra16G0013000 Salix brachista HOM05D004987 ORTHO05D005960 3.2e-130 469.2 570 48.2
Aqoxy5G03428 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 5.4e-130 468.4 507 50.7
A01p21160 Brassica napus HOM05D004987 ORTHO05D005960 5.4e-130 468.4 480 51.2
Oeu030104.1 Olea europaea HOM05D004987 ORTHO05D005960 2.0e-129 466.5 299 74.6
Migut.M01428 Erythranthe guttata HOM05D004987 ORTHO05D005960 1.0e-128 464.2 299 73.2
MSTRG.14600 Avicennia marina HOM05D004987 ORTHO05D005960 5.0e-128 461.8 299 72.6
EL10Ac3g07283 Beta vulgaris HOM05D004987 ORTHO05D005960 6.6e-128 461.5 299 71.9
SalBow8G4301 Salvia bowleyana HOM05D004987 ORTHO05D005960 8.6e-128 461.1 299 71.9
Ah.02g126930 Amaranthus hybridus HOM05D004987 ORTHO05D005960 1.9e-127 459.9 297 72.1
vmacro23178 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 1.9e-127 459.9 304 71.1
Cc09_g00600 Coffea canephora HOM05D004987 ORTHO05D005960 2.5e-127 459.5 299 72.2
SGA_v2.0_scaffold54G19512 Striga asiatica HOM05D004987 ORTHO05D005960 5.6e-127 458.4 299 71.6
DCAR_014269 Daucus carota HOM05D004987 ORTHO05D005960 9.5e-127 457.6 299 73.2
Medtr4g062080 Medicago truncatula HOM05D004987 ORTHO05D005960 9.5e-127 457.6 481 51.8
SGA_v2.0_scaffold111G31506 Striga asiatica HOM05D004987 ORTHO05D005960 2.1e-126 456.4 298 71.5
BraA01t02026Z Brassica rapa HOM05D004987 ORTHO05D005960 2.8e-126 456.1 504 49.0
ATR0594G143 Amborella trichopoda HOM05D004987 ORTHO05D005960 4.7e-126 455.3 487 49.9
PSO017G3064 Papaver somniferum HOM05D004987 ORTHO05D005960 4.7e-126 455.3 479 51.4
Lj2g0000431 Lotus japonicus HOM05D004987 ORTHO05D005960 2.2e-123 446.4 448 53.8
PSO675G1563 Papaver somniferum HOM05D004987 ORTHO05D005960 6.4e-123 444.9 478 50.0
unitig_749.g13618 Utricularia gibba HOM05D004987 ORTHO05D005960 8.3e-123 444.5 470 50.0
TPR.G32192 Trifolium pratense HOM05D004987 ORTHO05D005960 1.1e-122 444.1 299 70.6
AUR62030265 Chenopodium quinoa HOM05D004987 ORTHO05D005960 5.4e-122 441.8 300 70.3
Os03g0748700 Oryza sativa ssp. japonica HOM05D004987 ORTHO05D005960 7.0e-122 441.4 324 64.8
Zm00001eb214910 Zea mays HOM05D004987 ORTHO05D005960 1.2e-121 440.7 299 67.2
Zm00001eb057200 Zea mays HOM05D004987 ORTHO05D005960 1.3e-120 437.2 299 66.9
Nitab4.5_0002021g0020 Nicotiana tabacum HOM05D004987 ORTHO05D005960 5.1e-120 435.3 482 49.6
Eucgr.D01441 Eucalyptus grandis HOM05D004987 ORTHO05D005960 7.5e-116 421.4 426 53.5
SHI24440 Sapria himalayana HOM05D004987 ORTHO05D005960 1.3e-115 420.6 497 47.1
Lsat_1_v5_gn_0_32381 Lactuca sativa HOM05D004987 ORTHO05D005960 1.9e-114 416.8 467 50.1
AagrBONN_evm.TU.Sc2ySwM_368.1142 Anthoceros agrestis HOM05D004987 ORTHO05D005960 1.5e-111 407.1 486 46.1
Pp3c6_16630 Physcomitrium patens HOM05D004987 ORTHO05D005960 1.1e-109 401.0 299 62.5
Mapoly0020s0065 Marchantia polymorpha HOM05D004987 ORTHO05D005960 3.5e-105 386.0 299 60.2
SMO356G0034 Selaginella moellendorffii HOM05D004987 ORTHO05D005960 6.0e-105 385.2 299 60.5
MD10G1336400 Malus domestica HOM05D004987 ORTHO05D005960 6.6e-104 381.7 285 66.7
Cc10_g02370 Coffea canephora HOM05D004987 ORTHO05D005960 1.3e-102 377.5 359 55.4
Lsat_1_v5_gn_6_62041 Lactuca sativa HOM05D004987 ORTHO05D005960 3.1e-101 372.9 483 43.7
SEGI_15851 Sequoiadendron giganteum HOM05D004987 ORTHO05D005960 5.6e-95 352.1 257 65.0
Ciclev10027102m.g Citrus clementina HOM05D004987 ORTHO05D005960 2.0e-84 317.0 182 79.1
Potri.016G008700 Populus trichocarpa HOM05D004987 ORTHO05D005960 1.0e-80 304.7 358 50.6
AagrBONN_evm.TU.Sc2ySwM_368.3306 Anthoceros agrestis HOM05D004987 ORTHO05D005960 5.3e-77 292.4 221 63.3
ATR0751G100 Amborella trichopoda HOM05D004987 ORTHO05D005960 6.7e-72 275.4 252 56.3
CsaV3_UNG059470 Cucumis sativus L. HOM05D004987 ORTHO05D005960 1.1e-71 274.6 498 37.6
Ciclev10004004m.g Citrus clementina HOM05D004987 ORTHO05D005960 2.9e-67 260.0 172 70.3
TWI38G1931 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 4.8e-62 242.7 258 51.6
Cre03.g200550 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 5.0e-59 232.6 380 38.4
Atru.chr1.2336 Acer truncatum HOM05D004987 ORTHO05D005960 6.3e-54 215.7 286 46.5
Aqoxy4G02991 Aquilegia oxysepala HOM05D000252 ORTHO05D000307 2.2e-51 207.2 170 62.9
MCO07G565 Micromonas commoda HOM05D004987 ORTHO05D005960 2.2e-51 207.2 319 41.1
PRCOL_00000051 Prasinoderma coloniale HOM05D004987 ORTHO05D005960 4.0e-40 169.9 331 36.6
arahy.Tifrunner.gnm1.ann1.4D4U0P Arachis hypogaea HOM05D004987 ORTHO05D005960 2.2e-38 164.1 212 46.7
Aqoxy6G02697 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 1.0e-32 145.2 222 41.4
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 3.4e-31 140.2 291 33.7
Cfa026410 Carpinus fangiana HOM05D004987 ORTHO05D005960 2.8e-30 137.1 276 33.7
arahy.Tifrunner.gnm1.ann1.24PAJQ Arachis hypogaea HOM05D004987 ORTHO05D005960 6.3e-30 136.0 267 33.3
HPP92_013953 Vanilla planifolia HOM05D004987 ORTHO05D005960 2.8e-25 120.6 81 67.9
Cre03.g199800 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 7.5e-23 112.5 332 26.2
Cre09.g396600 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 1.1e-21 108.6 340 27.1
arahy.Tifrunner.gnm1.ann1.YI5A3W Arachis hypogaea HOM05D004987 ORTHO05D005960 1.5e-15 88.2 64 67.2
AagrBONN_evm.TU.Sc2ySwM_368.1145 Anthoceros agrestis HOM05D004987 ORTHO05D005960 1.7e-14 84.7 107 47.7
Lsat_1_v5_gn_6_62060 Lactuca sativa HOM05D004987 ORTHO05D005960 2.7e-12 77.4 217 30.4
arahy.Tifrunner.gnm1.ann1.N1GFR4 Arachis hypogaea HOM05D004987 ORTHO05D005960 4.6e-12 76.6 256 25.0
MELO3C000413.2 Cucumis melo HOM05D004987 ORTHO05D005960 2.3e-11 74.3 42 83.3
GSVIVG01005416001 Vitis vinifera HOM05D004987 ORTHO05D005960 2.3e-11 74.3 51 68.6
TPR.G35318 Trifolium pratense HOM05D004987 ORTHO05D005960 2.0e-07 61.2 42 71.4
arahy.Tifrunner.gnm1.ann1.GKV1XW Arachis hypogaea HOM05D004987 ORTHO05D005960 4.9e-06 56.6 46 63.0
FAN21G3552 Fragaria x ananassa HOM05D004987 ORTHO05D005960 4.9e-06 56.6 42 66.7


User provided reference genes

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