Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc27.234 Carica papaya HOM05D003761 ORTHO05D004412 2.9e-57 224.9 110 100.0
Cpa.g.sc27.232 Carica papaya HOM05D003761 ORTHO05D004412 1.2e-34 149.8 97 72.2
COL.COLO4_31936 Corchorus olitorius HOM05D003761 ORTHO05D004412 2.4e-27 125.6 98 57.1
Ciclev10016770m.g Citrus clementina HOM05D003761 ORTHO05D004412 5.4e-27 124.4 98 60.2
MD05G1360900 Malus domestica HOM05D003761 ORTHO05D004412 1.2e-26 123.2 101 55.4
Thecc.06G240300 Theobroma cacao HOM05D003761 ORTHO05D004412 2.7e-26 122.1 98 59.2
MD10G1338600 Malus domestica HOM05D003761 ORTHO05D004412 3.5e-26 121.7 102 56.9
Duzib192G0597 Durio zibethinus HOM05D003761 ORTHO05D004412 7.8e-26 120.6 98 56.1
CANSAT56G1869 Cannabis sativa HOM05D003761 ORTHO05D004412 3.0e-25 118.6 102 52.9
Prupe.4G004300 Prunus persica HOM05D003761 ORTHO05D004412 5.1e-25 117.9 102 52.9
QL05p067831 Quercus lobata HOM05D003761 ORTHO05D004412 6.6e-25 117.5 102 54.9
FAN25G2178 Fragaria x ananassa HOM05D003761 ORTHO05D004412 5.6e-24 114.4 102 52.9
Cfa000041 Carpinus fangiana HOM05D003761 ORTHO05D004412 1.6e-23 112.8 100 52.0
Haze_07014 Corylus avellana HOM05D003761 ORTHO05D004412 3.6e-23 111.7 100 52.0
FAN21G2431 Fragaria x ananassa HOM05D003761 ORTHO05D004412 3.6e-23 111.7 102 51.0
FvH4_3g00370 Fragaria vesca HOM05D003761 ORTHO05D004412 4.7e-23 111.3 102 51.0
CiPaw.09G108600 Carya illinoinensis HOM05D003761 ORTHO05D004412 1.8e-22 109.4 102 52.0
Sabra16G0011000 Salix brachista HOM05D003761 ORTHO05D004412 5.2e-22 107.8 102 51.0
Sabra06G0004500 Salix brachista HOM05D003761 ORTHO05D004412 1.2e-21 106.7 102 50.0
Potri.006G005600 Populus trichocarpa HOM05D003761 ORTHO05D004412 2.6e-21 105.5 102 51.0
Gohir.D06G217400 Gossypium hirsutum HOM05D003761 ORTHO05D004412 3.4e-21 105.1 101 48.5
Lj6g0023004 Lotus japonicus HOM05D003761 ORTHO05D004412 3.4e-21 105.1 87 52.9
Potri.016G006200 Populus trichocarpa HOM05D003761 ORTHO05D004412 3.4e-21 105.1 102 51.0
PGR042G2523 Punica granatum HOM05D003761 ORTHO05D004412 4.4e-21 104.8 102 48.0
Gorai.010G248800 Gossypium raimondii HOM05D003761 ORTHO05D004412 5.8e-21 104.4 101 48.5
Manes.09G083000 Manihot esculenta HOM05D003761 ORTHO05D004412 7.6e-21 104.0 99 50.5
Atru.chr1.2273 Acer truncatum HOM05D003761 ORTHO05D004412 9.9e-21 103.6 98 51.0
Lalb_Chr15g0088211 Lupinus albus HOM05D003761 ORTHO05D004412 2.9e-20 102.1 95 50.5
TAR626G0912 Trochodendron aralioides HOM05D003761 ORTHO05D004412 2.9e-20 102.1 102 48.0
Actinidia39257 Actinidia chinensis HOM05D003761 ORTHO05D004412 4.9e-20 101.3 98 50.0
CSS0009294 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 4.9e-20 101.3 101 50.5
CSS0045719 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 4.9e-20 101.3 101 50.5
Gohir.A06G204100 Gossypium hirsutum HOM05D003761 ORTHO05D004412 4.9e-20 101.3 98 46.9
Sopen11g006960 Solanum pennellii HOM05D003761 ORTHO05D004412 1.1e-19 100.1 98 50.0
Hma1.2p1_1175F.1_g263990 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 4.1e-19 98.2 102 46.1
Lj2C256G8 Lonicera japonica HOM05D003761 ORTHO05D004412 4.1e-19 98.2 102 48.0
Actinidia02285 Actinidia chinensis HOM05D000829 ORTHO05D000690 5.4e-19 97.8 112 48.2
Solyc11g012170.1 Solanum lycopersicum HOM05D003761 ORTHO05D004412 5.4e-19 97.8 98 49.0
Hma1.2p1_1175F.1_g263980 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 7.1e-19 97.4 97 47.4
GSVIVG01005138001 Vitis vinifera HOM05D003761 ORTHO05D004412 7.1e-19 97.4 101 46.5
Psat4g002880 Pisum sativum HOM05D003761 ORTHO05D004412 9.2e-19 97.1 100 50.0
PGSC0003DMG400013274 Solanum tuberosum HOM05D003761 ORTHO05D004412 9.2e-19 97.1 98 49.0
AUR62021816 Chenopodium quinoa HOM05D003761 ORTHO05D004412 1.2e-18 96.7 91 49.5
Actinidia11903 Actinidia chinensis HOM05D003761 ORTHO05D004412 1.6e-18 96.3 98 48.0
Sed0021615 Sechium edule HOM05D003761 ORTHO05D004412 2.1e-18 95.9 103 40.8
Sc05g0009870 Simmondsia chinensis HOM05D003761 ORTHO05D004412 2.7e-18 95.5 100 47.0
vmacro03612 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 2.7e-18 95.5 87 51.7
Glyma.17G005900 Glycine max HOM05D003761 ORTHO05D004412 4.6e-18 94.7 98 49.0
MSTRG.14590 Avicennia marina HOM05D003761 ORTHO05D004412 6.0e-18 94.4 101 47.5
Nn1g07502 Nelumbo nucifera HOM05D003761 ORTHO05D004412 6.0e-18 94.4 102 45.1
ECA248G3040 Erigeron canadensis HOM05D003761 ORTHO05D004412 7.8e-18 94.0 102 46.1
Sed0014180 Sechium edule HOM05D003761 ORTHO05D004412 7.8e-18 94.0 100 44.0
vmacro03611 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 1.0e-17 93.6 91 48.4
vmacro23224 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 1.0e-17 93.6 91 48.4
Aa31LG9G5380 Aethionema arabicum HOM05D003761 ORTHO05D004412 2.3e-17 92.4 104 41.3
Ah.09g233900 Amaranthus hybridus HOM05D003761 ORTHO05D004412 2.3e-17 92.4 100 47.0
Rhsim13G0141000 Rhododendron simsii HOM05D003761 ORTHO05D004412 2.3e-17 92.4 87 50.6
VMungo1215G0779 Vigna mungo HOM05D003761 ORTHO05D004412 2.3e-17 92.4 100 48.0
MELO3C025526.2 Cucumis melo HOM05D003761 ORTHO05D004412 3.0e-17 92.0 100 40.0
CsaV3_1G015780 Cucumis sativus L. HOM05D003761 ORTHO05D004412 3.9e-17 91.7 100 40.0
CsaV3_UNG065500 Cucumis sativus L. HOM05D003761 ORTHO05D004412 3.9e-17 91.7 100 40.0
Eucgr.E03855 Eucalyptus grandis HOM05D003761 ORTHO05D004412 3.9e-17 91.7 102 42.2
Sc24g0000400 Simmondsia chinensis HOM05D003761 ORTHO05D004412 5.1e-17 91.3 100 46.0
AUR62012843 Chenopodium quinoa HOM05D003761 ORTHO05D004412 6.6e-17 90.9 91 48.4
Cc09_g00350 Coffea canephora HOM05D003761 ORTHO05D004412 8.7e-17 90.5 101 43.6
Medtr4g133932 Medicago truncatula HOM05D003761 ORTHO05D004412 8.7e-17 90.5 100 47.0
Oeu057021.1 Olea europaea HOM05D003761 ORTHO05D004412 8.7e-17 90.5 90 43.3
Ca_20995_v3 Cicer arietinum L. HOM05D003761 ORTHO05D004412 1.5e-16 89.7 100 48.0
Eucgr.L00155 Eucalyptus grandis HOM05D003761 ORTHO05D004412 1.5e-16 89.7 91 44.0
Lj4g0001357 Lotus japonicus HOM05D003761 ORTHO05D004412 1.5e-16 89.7 81 51.9
Phvul.003G086700 Phaseolus vulgaris HOM05D003761 ORTHO05D004412 1.5e-16 89.7 100 46.0
PGR004G2813 Punica granatum HOM05D003761 ORTHO05D004412 1.5e-16 89.7 92 46.7
Carub.0008s0015 Capsella rubella HOM05D003761 ORTHO05D004412 4.3e-16 88.2 96 40.6
CAN.G1186.30 Capsicum annuum HOM05D003761 ORTHO05D004412 4.3e-16 88.2 100 42.0
EL10Ac8g20260 Beta vulgaris HOM05D003761 ORTHO05D004412 5.6e-16 87.8 101 41.6
Lalb_Chr13g0304361 Lupinus albus HOM05D003761 ORTHO05D004412 5.6e-16 87.8 100 42.0
MBI18_g27019_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 5.6e-16 87.8 88 43.2
Nitab4.5_0000143g0280 Nicotiana tabacum HOM05D003761 ORTHO05D004412 5.6e-16 87.8 82 51.2
THA.LOC104806736 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 5.6e-16 87.8 87 43.7
TPR.G5987 Trifolium pratense HOM05D003761 ORTHO05D004412 5.6e-16 87.8 96 46.9
TWI38G1412 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 5.6e-16 87.8 111 46.8
Peaxi162Scf00558g00515 Petunia axillaris HOM05D003761 ORTHO05D004412 9.6e-16 87.0 99 46.5
Oeu025400.1 Olea europaea HOM05D003761 ORTHO05D004412 1.2e-15 86.7 84 46.4
Aa31LG5G19480 Aethionema arabicum HOM05D003761 ORTHO05D004412 1.6e-15 86.3 102 41.2
Aqoxy4G01086 Aquilegia oxysepala HOM05D003761 ORTHO05D004412 1.6e-15 86.3 103 45.6
MBI18_g42884_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 1.6e-15 86.3 88 42.0
Oeu025960.1 Olea europaea HOM05D003761 ORTHO05D004412 1.6e-15 86.3 90 41.1
Sp2g12340 Schrenkiella parvula HOM05D003761 ORTHO05D004412 1.6e-15 86.3 96 41.7
AL8G10320 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 2.1e-15 85.9 96 39.6
BcaB02g09051 Brassica carinata HOM05D003761 ORTHO05D004412 2.8e-15 85.5 106 41.5
Eucgr.L00154 Eucalyptus grandis HOM05D003761 ORTHO05D004412 2.8e-15 85.5 91 42.9
MBI19_g14888_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 3.6e-15 85.1 84 42.9
BcaC09g50449 Brassica carinata HOM05D003761 ORTHO05D004412 4.7e-15 84.7 92 42.4
C01p25300 Brassica napus HOM05D003761 ORTHO05D004412 4.7e-15 84.7 92 42.4
BolC1t02480H Brassica oleracea HOM05D003761 ORTHO05D004412 4.7e-15 84.7 92 42.4
CDE10G1059 Ceratophyllum demersum HOM05D003761 ORTHO05D004412 4.7e-15 84.7 97 41.2
ClCG01G010750 Citrullus lanatus HOM05D003761 ORTHO05D004412 4.7e-15 84.7 96 40.6
Lsat_1_v5_gn_7_13080 Lactuca sativa HOM05D003761 ORTHO05D004412 4.7e-15 84.7 95 41.1
AT5G47635 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 6.2e-15 84.3 96 39.6
BolC7t43669H Brassica oleracea HOM05D003761 ORTHO05D004412 6.2e-15 84.3 104 39.4
Dinv15342 Davidia involucrata HOM05D003761 ORTHO05D004412 6.2e-15 84.3 85 47.1
C07p31280 Brassica napus HOM05D003761 ORTHO05D004412 8.1e-15 84.0 100 38.0
BcaC06g31357 Brassica carinata HOM05D003761 ORTHO05D004412 1.1e-14 83.6 96 39.6
PSO541G3650 Papaver somniferum HOM05D003761 ORTHO05D004412 1.1e-14 83.6 98 42.9
Sp7g16980 Schrenkiella parvula HOM05D003761 ORTHO05D004412 1.1e-14 83.6 87 43.7
BolC4t28284H Brassica oleracea HOM05D003761 ORTHO05D004412 1.4e-14 83.2 104 39.4
CARHR173680 Cardamine hirsuta HOM05D003761 ORTHO05D004412 1.4e-14 83.2 87 41.4
Nitab4.5_0001198g0070 Nicotiana tabacum HOM05D003761 ORTHO05D004412 1.4e-14 83.2 78 52.6
PSO675G1588 Papaver somniferum HOM05D003761 ORTHO05D004412 1.4e-14 83.2 96 41.7
A04p30050 Brassica napus HOM05D003761 ORTHO05D004412 2.4e-14 82.4 104 39.4
BraA04t18501Z Brassica rapa HOM05D003761 ORTHO05D004412 2.4e-14 82.4 104 39.4
TWI38G2030 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 2.4e-14 82.4 80 52.5
Oeu002779.1 Olea europaea HOM05D003761 ORTHO05D004412 4.0e-14 81.6 102 39.2
MSTRG.13107 Avicennia marina HOM05D003761 ORTHO05D004412 5.2e-14 81.3 101 41.6
A06p44900 Brassica napus HOM05D003761 ORTHO05D004412 6.9e-14 80.9 96 38.5
BraA06t27361Z Brassica rapa HOM05D003761 ORTHO05D004412 6.9e-14 80.9 96 38.5
BcaB07g30768 Brassica carinata HOM05D003761 ORTHO05D004412 9.0e-14 80.5 94 39.4
BcaC04g21612 Brassica carinata HOM05D003761 ORTHO05D004412 9.0e-14 80.5 96 38.5
A05p06360 Brassica napus HOM05D003761 ORTHO05D004412 9.0e-14 80.5 106 38.7
C09p29870 Brassica napus HOM05D003761 ORTHO05D004412 9.0e-14 80.5 96 38.5
BolC9t55850H Brassica oleracea HOM05D003761 ORTHO05D004412 9.0e-14 80.5 96 38.5
BraA05t19604Z Brassica rapa HOM05D003761 ORTHO05D004412 9.0e-14 80.5 106 38.7
Carub.0004s2229 Capsella rubella HOM05D003761 ORTHO05D004412 9.0e-14 80.5 104 38.5
CARHR223820 Cardamine hirsuta HOM05D003761 ORTHO05D004412 9.0e-14 80.5 98 38.8
Migut.H01629 Erythranthe guttata HOM05D003761 ORTHO05D004412 9.0e-14 80.5 90 43.3
Thhalv10001056m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 1.2e-13 80.1 96 37.5
SGA_v2.0_scaffold49G18223 Striga asiatica HOM05D003761 ORTHO05D004412 1.2e-13 80.1 90 43.3
HPP92_024936 Vanilla planifolia HOM05D003761 ORTHO05D004412 1.2e-13 80.1 85 42.4
BcaB02g09050 Brassica carinata HOM05D003761 ORTHO05D004412 1.5e-13 79.7 106 38.7
BcaB06g29129 Brassica carinata HOM05D003761 ORTHO05D004412 1.5e-13 79.7 104 37.5
BolC4t22355H Brassica oleracea HOM05D003761 ORTHO05D004412 1.5e-13 79.7 106 38.7
CARHR135090 Cardamine hirsuta HOM05D003761 ORTHO05D004412 2.0e-13 79.3 101 37.6
HPP92_024932 Vanilla planifolia HOM05D003761 ORTHO05D004412 2.0e-13 79.3 85 41.2
Thhalv10017342m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 2.6e-13 79.0 104 36.5
Lsat_1_v5_gn_1_130120 Lactuca sativa HOM05D003761 ORTHO05D004412 2.6e-13 79.0 75 48.0
Aa31LG2G12410 Aethionema arabicum HOM05D003761 ORTHO05D004412 4.4e-13 78.2 85 40.0
AT4G17215 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 4.4e-13 78.2 93 39.8
BcaC02g07354 Brassica carinata HOM05D003761 ORTHO05D004412 5.8e-13 77.8 104 37.5
Thhalv10026465m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 5.8e-13 77.8 87 42.5
Os10g0208600 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 5.8e-13 77.8 109 40.4
BcaNung03472 Brassica carinata HOM05D003761 ORTHO05D004412 9.9e-13 77.0 92 38.0
AL7G37500 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 1.3e-12 76.6 93 39.8
THA.LOC104798379 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 1.3e-12 76.6 87 41.4
Sp4g22430 Schrenkiella parvula HOM05D003761 ORTHO05D004412 1.7e-12 76.3 106 34.9
SGA_v2.0_scaffold7G03701 Striga asiatica HOM05D003761 ORTHO05D004412 1.7e-12 76.3 90 40.0
arahy.Tifrunner.gnm1.ann1.UZ71G8 Arachis hypogaea HOM05D003761 ORTHO05D004412 2.2e-12 75.9 105 41.0
A09p23140 Brassica napus HOM05D003761 ORTHO05D004412 2.2e-12 75.9 88 39.8
C04p67800 Brassica napus HOM05D003761 ORTHO05D004412 2.2e-12 75.9 85 43.5
BraA09t37917Z Brassica rapa HOM05D003761 ORTHO05D004412 2.2e-12 75.9 88 39.8
arahy.Tifrunner.gnm1.ann1.YY2BB8 Arachis hypogaea HOM05D003761 ORTHO05D004412 2.9e-12 75.5 105 41.0
BcaC06g34236 Brassica carinata HOM05D003761 ORTHO05D004412 2.9e-12 75.5 76 43.4
ATR0827G170 Amborella trichopoda HOM05D003761 ORTHO05D004412 3.8e-12 75.1 96 39.6
DCAR_030834 Daucus carota HOM05D003761 ORTHO05D004412 3.8e-12 75.1 91 39.6
AL4G37770 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 6.4e-12 74.3 105 36.2
BraA01t01941Z Brassica rapa HOM05D003761 ORTHO05D004412 8.4e-12 73.9 101 37.6
SGA_v2.0_scaffold186G40120 Striga asiatica HOM05D003761 ORTHO05D004412 8.4e-12 73.9 87 41.4
BcaNung03474 Brassica carinata HOM05D003761 ORTHO05D004412 1.1e-11 73.6 90 40.0
Carub.0007s2420 Capsella rubella HOM05D003761 ORTHO05D004412 1.1e-11 73.6 95 37.9
HanXRQChr01g0003591 Helianthus annuus HOM05D003761 ORTHO05D004412 5.4e-11 71.2 85 38.8
BcaC06g33549 Brassica carinata HOM05D003761 ORTHO05D004412 7.1e-11 70.9 90 38.9
A03p50350 Brassica napus HOM05D003761 ORTHO05D004412 7.1e-11 70.9 90 38.9
C07p48660 Brassica napus HOM05D003761 ORTHO05D004412 7.1e-11 70.9 90 38.9
BolC7t45373H Brassica oleracea HOM05D003761 ORTHO05D004412 7.1e-11 70.9 90 38.9
BraA03t14124Z Brassica rapa HOM05D003761 ORTHO05D004412 7.1e-11 70.9 90 38.9
AT2G40113 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 1.2e-10 70.1 105 35.2
HanXRQChr15g0470241 Helianthus annuus HOM05D003761 ORTHO05D004412 1.2e-10 70.1 77 46.8
unitig_52.g17560 Utricularia gibba HOM05D003761 ORTHO05D004412 1.2e-10 70.1 90 36.7
SalBow8G1906 Salvia bowleyana HOM05D003761 ORTHO05D004412 3.5e-10 68.6 91 40.7
BcaNung00112 Brassica carinata HOM05D003761 ORTHO05D004412 6.0e-10 67.8 84 36.9
MSTRG.7132 Avicennia marina HOM05D003761 ORTHO05D004412 1.7e-09 66.2 91 35.2
Migut.M01442 Erythranthe guttata HOM05D003761 ORTHO05D004412 1.7e-09 66.2 94 39.4
Os10g0206500 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 4.3e-08 61.6 117 34.2
Peaxi162Scf00442g00073 Petunia axillaris HOM05D003761 ORTHO05D004412 5.6e-08 61.2 91 37.4
Zm00001eb050510 Zea mays HOM05D003761 ORTHO05D004412 5.6e-08 61.2 114 36.0
CAN.G1156.14 Capsicum annuum HOM05D003761 ORTHO05D004412 1.4e-06 56.6 109 36.7
Solyc11g012705.2 Solanum lycopersicum HOM05D003761 ORTHO05D004412 4.0e-06 55.1 100 34.0
Sopen11g007440 Solanum pennellii HOM05D003761 ORTHO05D004412 4.0e-06 55.1 84 35.7
PGSC0003DMG400013298 Solanum tuberosum HOM05D003761 ORTHO05D004412 5.3e-06 54.7 85 36.5


User provided reference genes

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