Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc27.190 Carica papaya HOM05D008403 ORTHO05D010317 2.3e-96 355.5 177 100.0
Duzib268G1784 Durio zibethinus HOM05D008403 ORTHO05D010317 2.4e-45 186.0 167 56.9
COL.COLO4_27522 Corchorus olitorius HOM05D008403 ORTHO05D010317 7.1e-45 184.5 172 58.1
Sabra08G0008100 Salix brachista HOM05D008403 ORTHO05D010317 2.1e-41 172.9 181 51.4
FvH4_3g00110 Fragaria vesca HOM05D008403 ORTHO05D010317 2.8e-41 172.6 170 55.9
RcHm_v2.0_Chr5g0000141 Rosa chinensis HOM05D008403 ORTHO05D010317 6.2e-41 171.4 168 56.5
FAN25G0691 Fragaria x ananassa HOM05D000186 ORTHO05D001124 1.4e-40 170.2 169 56.2
TWI31G1421 Tripterygium wilfordii HOM05D008403 ORTHO05D010317 3.1e-40 169.1 177 52.0
Potri.008G013400 Populus trichocarpa HOM05D008403 ORTHO05D010317 7.6e-39 164.5 182 50.5
CANSAT56G1928 Cannabis sativa HOM05D008403 ORTHO05D010317 8.4e-38 161.0 159 52.8
CiPaw.08G030100 Carya illinoinensis HOM05D008403 ORTHO05D010317 3.5e-36 155.6 171 53.8
Manes.08G015200 Manihot esculenta HOM05D008403 ORTHO05D010317 5.1e-35 151.8 166 47.6
Rhsim02G0087900 Rhododendron simsii HOM05D008403 ORTHO05D010317 6.6e-35 151.4 154 52.6
Atru.chr2.423 Acer truncatum HOM05D008403 ORTHO05D010317 1.5e-34 150.2 177 46.3
Atru.chr2.1377 Acer truncatum HOM05D008403 ORTHO05D010317 5.6e-34 148.3 145 51.7
Prupe.4G001200 Prunus persica HOM05D008403 ORTHO05D010317 9.6e-34 147.5 160 50.0
Ciclev10017450m.g Citrus clementina HOM05D008403 ORTHO05D010317 1.3e-33 147.1 156 52.6
QL05p066293 Quercus lobata HOM05D008403 ORTHO05D010317 3.6e-33 145.6 150 48.7
Atru.chr1.2232 Acer truncatum HOM05D008403 ORTHO05D010317 6.2e-33 144.8 172 46.5
CiPaw.09G112600 Carya illinoinensis HOM05D008403 ORTHO05D010317 8.1e-33 144.4 167 49.1
CSS0029866 Camellia sinensis var. sinensis HOM05D008403 ORTHO05D010317 1.1e-32 144.1 154 50.6
Potri.016G001600 Populus trichocarpa HOM05D008403 ORTHO05D010317 3.1e-32 142.5 168 49.4
Atru.chr2.427 Acer truncatum HOM05D008403 ORTHO05D010317 1.5e-31 140.2 178 44.4
Lj6g0020324 Lotus japonicus HOM05D008403 ORTHO05D010317 2.9e-30 136.0 168 45.2
Aqoxy4G02379 Aquilegia oxysepala HOM05D008403 ORTHO05D010317 3.8e-30 135.6 180 43.3
QL05p066264 Quercus lobata HOM05D008403 ORTHO05D010317 9.3e-29 131.0 151 46.4
PGR004G1501 Punica granatum HOM05D008403 ORTHO05D010317 2.7e-28 129.4 173 44.5
Eucgr.D00968 Eucalyptus grandis HOM05D008403 ORTHO05D010317 1.9e-26 123.2 171 40.9
Lalb_Chr20g0119681 Lupinus albus HOM05D008403 ORTHO05D010317 1.3e-25 120.6 165 41.8
Oeu016936.1 Olea europaea HOM05D008403 ORTHO05D010317 6.2e-25 118.2 173 42.2
Rhsim02G0088000 Rhododendron simsii HOM05D008403 ORTHO05D010317 2.4e-24 116.3 171 45.6
Actinidia04549 Actinidia chinensis HOM05D008403 ORTHO05D010317 1.3e-22 110.5 139 46.0
PGR004G1348 Punica granatum HOM05D008403 ORTHO05D010317 1.3e-22 110.5 150 40.7
PSO675G4416 Papaver somniferum HOM05D008403 ORTHO05D010317 1.4e-21 107.1 151 44.4
PSO541G3674 Papaver somniferum HOM05D008403 ORTHO05D010317 1.3e-19 100.5 183 39.3
PSO732G0610 Papaver somniferum HOM05D008403 ORTHO05D010317 4.8e-17 92.0 150 38.0
PSO732G0094 Papaver somniferum HOM05D008403 ORTHO05D010317 1.8e-16 90.1 177 37.3
PSO732G0092 Papaver somniferum HOM05D008403 ORTHO05D010317 9.0e-16 87.8 163 37.4
PSO675G0961 Papaver somniferum HOM05D008403 ORTHO05D010317 2.0e-15 86.7 175 37.1
PSO732G0418 Papaver somniferum HOM05D008403 ORTHO05D010317 4.5e-15 85.5 176 34.7
TAR627G0716 Trochodendron aralioides HOM05D008403 ORTHO05D010317 5.8e-15 85.1 164 36.6
SGA_v2.0_scaffold7G03659 Striga asiatica HOM05D008403 ORTHO05D010317 5.0e-14 82.0 153 31.4
Gorai.010G247400 Gossypium raimondii HOM05D014554 ORTHO05D010317 6.5e-14 81.6 151 35.8
PSO732G0597 Papaver somniferum HOM05D008403 ORTHO05D010317 6.5e-14 81.6 154 37.0
Lalb_Chr15g0088411 Lupinus albus HOM05D008403 ORTHO05D010317 1.4e-13 80.5 79 51.9
Gohir.D06G218900 Gossypium hirsutum HOM05D014554 ORTHO05D010317 1.9e-13 80.1 151 35.8
SGA_v2.0_scaffold186G40153 Striga asiatica HOM05D008403 ORTHO05D010317 1.9e-13 80.1 140 36.4
Gohir.A06G202800 Gossypium hirsutum HOM05D014554 ORTHO05D010317 2.5e-13 79.7 173 33.5
Thecc.06G243800 Theobroma cacao HOM05D014554 ORTHO05D010317 3.2e-13 79.3 163 35.0
Oeu017922.1 Olea europaea HOM05D008403 ORTHO05D010317 1.6e-12 77.0 131 38.9
SGA_v2.0_scaffold186G40151 Striga asiatica HOM05D008403 ORTHO05D010317 1.6e-12 77.0 154 32.5
Nn1g08310 Nelumbo nucifera HOM05D008403 ORTHO05D010317 2.7e-12 76.3 153 32.7
MBI09_g02146_MAGBIO Magnolia biondii HOM05D001578 ORTHO05D001207 2.3e-11 73.2 167 34.7
MBI18_g04557_MAGBIO Magnolia biondii HOM05D008403 ORTHO05D010317 8.7e-11 71.2 142 33.8
Dinv29549 Davidia involucrata HOM05D003146 ORTHO05D001819 1.1e-10 70.9 162 32.1
RcHm_v2.0_Chr3g0486661 Rosa chinensis HOM05D008191 ORTHO05D010044 1.5e-10 70.5 166 27.7
Dinv29548 Davidia involucrata HOM05D003146 ORTHO05D001819 1.9e-10 70.1 177 29.4
MBI09_g01820_MAGBIO Magnolia biondii HOM05D001578 ORTHO05D001207 1.9e-10 70.1 159 34.6
Oeu002789.2 Olea europaea HOM05D008403 ORTHO05D010317 1.9e-10 70.1 133 33.1
Thecc.02G296800 Theobroma cacao HOM05D008403 ORTHO05D010317 1.9e-10 70.1 81 48.1
Thecc.05G027500 Theobroma cacao HOM05D014554 ORTHO05D036092 2.5e-10 69.7 196 30.6
MBI09_g40718_MAGBIO Magnolia biondii HOM05D001578 ORTHO05D001207 3.3e-10 69.3 159 34.0
Nitab4.5_0004809g0010 Nicotiana tabacum HOM05D001578 ORTHO05D001207 5.7e-10 68.6 135 31.1
TAR627G0557 Trochodendron aralioides HOM05D008403 ORTHO05D010317 5.7e-10 68.6 167 29.3
CANSAT01G2965 Cannabis sativa HOM05D004113 ORTHO05D005233 7.4e-10 68.2 162 32.7
Migut.M01476 Erythranthe guttata HOM05D008403 ORTHO05D010317 7.4e-10 68.2 173 31.8
Eucgr.L02838 Eucalyptus grandis HOM05D001578 ORTHO05D001207 9.7e-10 67.8 153 33.3
TAR627G0317 Trochodendron aralioides HOM05D008403 ORTHO05D010317 1.3e-09 67.4 176 29.0
CANSAT01G1731 Cannabis sativa HOM05D004113 ORTHO05D005233 1.6e-09 67.0 162 32.1
Prupe.1G113800 Prunus persica HOM05D001578 ORTHO05D001207 2.2e-09 66.6 176 30.1
Carub.0004s1276 Capsella rubella HOM05D008191 ORTHO05D010044 2.8e-09 66.2 172 26.7
MBI07_g43317_MAGBIO Magnolia biondii HOM05D011459 ORTHO05D001261 3.7e-09 65.9 121 37.2
vmacro07979 Vaccinium macrocarpon HOM05D003146 ORTHO05D001819 3.7e-09 65.9 165 30.3
COL.COLO4_23184 Corchorus olitorius HOM05D008191 ORTHO05D010044 6.3e-09 65.1 172 26.7
FAN16G3582 Fragaria x ananassa HOM05D004113 ORTHO05D005233 6.3e-09 65.1 183 32.2
CiPaw.08G093400 Carya illinoinensis HOM05D003556 ORTHO05D003404 8.2e-09 64.7 125 32.8
Migut.F01664 Erythranthe guttata HOM05D008403 ORTHO05D010317 8.2e-09 64.7 150 31.3
FvH4_1g24160 Fragaria vesca HOM05D004113 ORTHO05D005233 8.2e-09 64.7 116 37.1
FAN19G1994 Fragaria x ananassa HOM05D004113 ORTHO05D005233 8.2e-09 64.7 116 37.1
Lj6g0019770 Lotus japonicus HOM05D000001 ORTHO05D010775 8.2e-09 64.7 78 44.9
RcHm_v2.0_Chr2g0120401 Rosa chinensis HOM05D004113 ORTHO05D005233 8.2e-09 64.7 124 35.5
FAN26G3157 Fragaria x ananassa HOM05D004113 ORTHO05D005233 1.4e-08 63.9 125 36.0
MBI04_g11519_MAGBIO Magnolia biondii HOM05D004113 ORTHO05D005233 1.4e-08 63.9 180 28.3
PGSC0003DMG400028678 Solanum tuberosum HOM05D004113 ORTHO05D005233 1.4e-08 63.9 130 35.4
Carub.0008s2541 Capsella rubella HOM05D004113 ORTHO05D005233 1.8e-08 63.5 120 34.2
FAN28G2384 Fragaria x ananassa HOM05D004113 ORTHO05D005233 1.8e-08 63.5 115 37.4
Nn1g00650 Nelumbo nucifera HOM05D001445 ORTHO05D001261 3.1e-08 62.8 178 28.7
Thecc.01G317500 Theobroma cacao HOM05D001578 ORTHO05D001207 3.1e-08 62.8 145 31.7
AL4G26690 Arabidopsis lyrata HOM05D008191 ORTHO05D010044 4.1e-08 62.4 170 25.9
Actinidia18484 Actinidia chinensis HOM05D003146 ORTHO05D001819 5.3e-08 62.0 160 27.5
Actinidia21437 Actinidia chinensis HOM05D003556 ORTHO05D003404 5.3e-08 62.0 164 29.3
HanXRQChr08g0218241 Helianthus annuus HOM05D004113 ORTHO05D005233 5.3e-08 62.0 182 30.8
PGSC0003DMG400037039 Solanum tuberosum HOM05D004113 ORTHO05D005233 9.0e-08 61.2 132 31.8
TAR636G1790 Trochodendron aralioides HOM05D004113 ORTHO05D005233 9.0e-08 61.2 180 30.6
Eucgr.H04068 Eucalyptus grandis HOM05D001578 ORTHO05D001207 1.2e-07 60.8 148 31.8
Eucgr.L02840 Eucalyptus grandis HOM05D001578 ORTHO05D001207 1.2e-07 60.8 148 31.8
MD13G1150400 Malus domestica HOM05D001578 ORTHO05D001207 1.2e-07 60.8 179 28.5
Prupe.6G197400 Prunus persica HOM05D004113 ORTHO05D005233 1.2e-07 60.8 176 28.4
MD01G1038300 Malus domestica HOM05D004113 ORTHO05D005233 1.5e-07 60.5 181 30.4
PGR004G2081 Punica granatum HOM05D003146 ORTHO05D001819 1.5e-07 60.5 166 28.3
PGR004G2339 Punica granatum HOM05D001578 ORTHO05D001207 1.5e-07 60.5 164 32.9
QL02p038562 Quercus lobata HOM05D004894 ORTHO05D005689 1.5e-07 60.5 155 33.5
Ciclev10003770m.g Citrus clementina HOM05D004894 ORTHO05D005689 2.0e-07 60.1 136 32.4
PSO724G1245 Papaver somniferum HOM05D008191 ORTHO05D010044 2.0e-07 60.1 136 27.9
MSTRG.23446 Avicennia marina HOM05D004113 ORTHO05D005233 2.6e-07 59.7 172 29.7
Cfa004856 Carpinus fangiana HOM05D012615 ORTHO05D010044 2.6e-07 59.7 161 26.1
MD13G1149800 Malus domestica HOM05D001578 ORTHO05D001207 2.6e-07 59.7 186 28.5
RhsimUnG0017500 Rhododendron simsii HOM05D004113 ORTHO05D005233 2.6e-07 59.7 150 34.0
THA.LOC104826194 Tarenaya hassleriana HOM05D008191 ORTHO05D010044 2.6e-07 59.7 171 26.3
QL02p037592 Quercus lobata HOM05D004894 ORTHO05D005689 3.4e-07 59.3 155 32.9
Sp2g27680 Schrenkiella parvula HOM05D004113 ORTHO05D005233 3.4e-07 59.3 117 33.3
QL06p012845 Quercus lobata HOM05D001578 ORTHO05D001207 4.5e-07 58.9 174 27.6
SGA_v2.0_scaffold355G49762 Striga asiatica HOM05D004113 ORTHO05D005233 4.5e-07 58.9 161 31.7
Aqoxy5G00783 Aquilegia oxysepala HOM05D003556 ORTHO05D003404 5.9e-07 58.5 170 27.6
BraA06t26077Z Brassica rapa HOM05D004113 ORTHO05D005233 5.9e-07 58.5 171 28.7
CDE06G2513 Ceratophyllum demersum HOM05D001445 ORTHO05D001261 5.9e-07 58.5 153 25.5
MD13G1150200 Malus domestica HOM05D001578 ORTHO05D001207 5.9e-07 58.5 150 32.0
TAR636G0184 Trochodendron aralioides HOM05D004113 ORTHO05D005233 5.9e-07 58.5 178 30.9
Nitab4.5_0001270g0060 Nicotiana tabacum HOM05D004113 ORTHO05D005233 7.7e-07 58.2 139 31.7
PSO384G1340 Papaver somniferum HOM05D015499 ORTHO05D001261 7.7e-07 58.2 188 26.6
PGR031G2424 Punica granatum HOM05D001578 ORTHO05D001207 7.7e-07 58.2 156 27.6
RhsimUnG0133000 Rhododendron simsii HOM05D004113 ORTHO05D005233 7.7e-07 58.2 150 34.0
Atru.chr4.844 Acer truncatum HOM05D004113 ORTHO05D005233 1.0e-06 57.8 147 34.0
Manes.03G207000 Manihot esculenta HOM05D001578 ORTHO05D001207 1.0e-06 57.8 164 31.1
Actinidia36483 Actinidia chinensis HOM05D000573 ORTHO05D001819 1.3e-06 57.4 150 27.3
MD12G1203300 Malus domestica HOM05D008339 ORTHO05D009712 1.3e-06 57.4 164 25.0
PSO081G0137 Papaver somniferum HOM05D001445 ORTHO05D001261 1.3e-06 57.4 185 24.9
TWI34G1970 Tripterygium wilfordii HOM05D001445 ORTHO05D003404 1.3e-06 57.4 164 26.8
Ca_16933_v3 Cicer arietinum L. HOM05D004113 ORTHO05D005233 1.7e-06 57.0 119 32.8
Ciclev10003542m.g Citrus clementina HOM05D001578 ORTHO05D001207 1.7e-06 57.0 144 25.7
Haze_01333 Corylus avellana HOM05D001578 ORTHO05D001207 1.7e-06 57.0 142 28.9
Haze_01338 Corylus avellana HOM05D001578 ORTHO05D001207 1.7e-06 57.0 142 28.9
Haze_03215 Corylus avellana HOM05D003146 ORTHO05D001819 1.7e-06 57.0 134 29.1
Migut.L00890 Erythranthe guttata HOM05D004113 ORTHO05D005233 1.7e-06 57.0 117 32.5
FvH4_1g05890 Fragaria vesca HOM05D001578 ORTHO05D001207 1.7e-06 57.0 153 28.1
Gorai.001G145900 Gossypium raimondii HOM05D008191 ORTHO05D010044 1.7e-06 57.0 115 27.0
QL05p060436 Quercus lobata HOM05D012615 ORTHO05D010044 1.7e-06 57.0 143 28.0
QL06p012837 Quercus lobata HOM05D001578 ORTHO05D001207 1.7e-06 57.0 175 28.0
TAR362G0352 Trochodendron aralioides HOM05D008191 ORTHO05D010044 1.7e-06 57.0 179 24.6
Cpa.g.c31737 Carica papaya HOM05D008191 ORTHO05D010044 2.2e-06 56.6 145 25.5
Duzib147G1472 Durio zibethinus HOM05D004113 ORTHO05D005233 2.2e-06 56.6 118 35.6
QL02p008132 Quercus lobata HOM05D012615 ORTHO05D010044 2.2e-06 56.6 140 25.7
Thecc.01G128300 Theobroma cacao HOM05D004113 ORTHO05D005233 2.2e-06 56.6 115 33.9
MBI07_g46097_MAGBIO Magnolia biondii HOM05D011459 ORTHO05D013640 2.9e-06 56.2 141 27.7
Nn1g00663 Nelumbo nucifera HOM05D001445 ORTHO05D001261 2.9e-06 56.2 182 28.0
PSO081G0057 Papaver somniferum HOM05D001445 ORTHO05D001261 2.9e-06 56.2 165 27.9
PSO729G0168 Papaver somniferum HOM05D008191 ORTHO05D010044 2.9e-06 56.2 119 27.7
Prupe.1G114500 Prunus persica HOM05D001578 ORTHO05D001207 2.9e-06 56.2 165 29.1
Rhsim07G0095800 Rhododendron simsii HOM05D003146 ORTHO05D001819 2.9e-06 56.2 142 28.9
TWI59G0004 Tripterygium wilfordii HOM05D001445 ORTHO05D001261 2.9e-06 56.2 166 27.1
Haze_04054 Corylus avellana HOM05D008339 ORTHO05D009712 3.8e-06 55.8 156 26.3
Gohir.D07G134300 Gossypium hirsutum HOM05D008191 ORTHO05D010044 3.8e-06 55.8 115 27.0
MD16G1150100 Malus domestica HOM05D001578 ORTHO05D001207 3.8e-06 55.8 173 27.7
RcHm_v2.0_Chr4g0426481 Rosa chinensis HOM05D001578 ORTHO05D001207 3.8e-06 55.8 155 28.4
EL10Ac5g12204 Beta vulgaris HOM05D001445 ORTHO05D001261 5.0e-06 55.5 185 28.6
CDE07G0552 Ceratophyllum demersum HOM05D001445 ORTHO05D003404 5.0e-06 55.5 147 27.2
Migut.O00479 Erythranthe guttata HOM05D022792 ORTHO05D001819 5.0e-06 55.5 156 30.8
Thhalv10005004m.g Eutrema salsugineum HOM05D004113 ORTHO05D005233 5.0e-06 55.5 117 29.9
Lsat_1_v5_gn_8_17501 Lactuca sativa HOM05D004113 ORTHO05D005233 5.0e-06 55.5 146 34.2
MD12G1203400 Malus domestica HOM05D008339 ORTHO05D009712 5.0e-06 55.5 165 24.8
Phvul.003G227700 Phaseolus vulgaris HOM05D001445 ORTHO05D001261 5.0e-06 55.5 174 29.3
QL06p012819 Quercus lobata HOM05D001578 ORTHO05D001207 5.0e-06 55.5 184 28.8
Rhsim11G0099000 Rhododendron simsii HOM05D008339 ORTHO05D009712 5.0e-06 55.5 172 22.7
ATR0693G401 Amborella trichopoda HOM05D001445 ORTHO05D001261 6.5e-06 55.1 156 29.5
Cfa015284 Carpinus fangiana HOM05D001578 ORTHO05D001207 6.5e-06 55.1 178 25.8
Gohir.A07G130033 Gossypium hirsutum HOM05D008191 ORTHO05D010044 6.5e-06 55.1 115 26.1
QL04p007223 Quercus lobata HOM05D003146 ORTHO05D001819 6.5e-06 55.1 163 24.5
AT3G17220 Arabidopsis thaliana HOM05D003146 ORTHO05D001819 8.5e-06 54.7 143 25.9
arahy.Tifrunner.gnm1.ann1.FMR9EU Arachis hypogaea HOM05D004113 ORTHO05D005233 8.5e-06 54.7 121 33.9
arahy.Tifrunner.gnm1.ann1.PRK495 Arachis hypogaea HOM05D004113 ORTHO05D005233 8.5e-06 54.7 126 34.1
CARHR092490 Cardamine hirsuta HOM05D003146 ORTHO05D001819 8.5e-06 54.7 165 23.6
Ciclev10006511m.g Citrus clementina HOM05D001578 ORTHO05D001207 8.5e-06 54.7 136 30.9
FvH4_2g14700 Fragaria vesca HOM05D004113 ORTHO05D005233 8.5e-06 54.7 153 26.8


User provided reference genes

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