Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc27.19 Carica papaya HOM05D002039 ORTHO05D005369 2.5e-100 369.0 215 100.0
Manes.17G048100 Manihot esculenta HOM05D002039 ORTHO05D005369 1.6e-54 216.9 197 71.6
Oeu029368.1 Olea europaea HOM05D002039 ORTHO05D005369 1.0e-53 214.2 197 72.6
Duzib160G0651 Durio zibethinus HOM05D002039 ORTHO05D005369 2.0e-49 199.9 234 61.5
Cfa000513 Carpinus fangiana HOM05D002039 ORTHO05D005369 1.7e-48 196.8 221 63.3
Thecc.06G183000 Theobroma cacao HOM05D002039 ORTHO05D005369 2.2e-48 196.4 221 64.7
Haze_06398 Corylus avellana HOM05D002039 ORTHO05D005369 3.7e-48 195.7 221 63.3
Dinv17339 Davidia involucrata HOM05D002039 ORTHO05D005369 2.4e-47 193.0 221 62.9
Duzib235G0008 Durio zibethinus HOM05D002039 ORTHO05D005369 4.1e-47 192.2 221 62.9
QL05p042020 Quercus lobata HOM05D002039 ORTHO05D005369 7.0e-47 191.4 221 64.3
TWI38G1755 Tripterygium wilfordii HOM05D002039 ORTHO05D005369 7.0e-47 191.4 221 62.0
TAR624G0590 Trochodendron aralioides HOM05D002039 ORTHO05D005369 7.0e-47 191.4 220 63.2
Potri.011G056800 Populus trichocarpa HOM05D002039 ORTHO05D005369 1.6e-46 190.3 221 62.4
arahy.Tifrunner.gnm1.ann1.Z7YHJK Arachis hypogaea HOM05D002039 ORTHO05D005369 2.0e-46 189.9 197 68.5
Sabra04G0029600 Salix brachista HOM05D002039 ORTHO05D005369 2.0e-46 189.9 222 62.6
TAR624G0166 Trochodendron aralioides HOM05D002039 ORTHO05D005369 2.0e-46 189.9 220 62.7
CiPaw.09G062500 Carya illinoinensis HOM05D002039 ORTHO05D005369 3.5e-46 189.1 221 60.6
Cc02_g13670 Coffea canephora HOM05D002039 ORTHO05D005369 3.5e-46 189.1 221 61.5
Migut.M01118 Erythranthe guttata HOM05D002039 ORTHO05D005369 3.5e-46 189.1 234 59.4
Lsat_1_v5_gn_4_52181 Lactuca sativa HOM05D002039 ORTHO05D005369 3.5e-46 189.1 239 60.3
Potri.004G047300 Populus trichocarpa HOM05D002039 ORTHO05D005369 3.5e-46 189.1 222 61.7
Ciclev10014609m.g Citrus clementina HOM05D002039 ORTHO05D005369 7.8e-46 188.0 222 64.0
Thhalv10007074m.g Eutrema salsugineum HOM05D002039 ORTHO05D005369 7.8e-46 188.0 223 61.9
CANSAT35G1633 Cannabis sativa HOM05D002039 ORTHO05D005369 1.0e-45 187.6 221 62.9
Eucgr.D00605 Eucalyptus grandis HOM05D002039 ORTHO05D005369 1.0e-45 187.6 238 60.1
AT1G28340 Arabidopsis thaliana HOM05D002039 ORTHO05D005369 1.3e-45 187.2 223 61.9
Carub.0001s2680 Capsella rubella HOM05D002039 ORTHO05D005369 1.3e-45 187.2 223 61.9
GSVIVG01021096001 Vitis vinifera HOM05D002039 ORTHO05D005369 1.7e-45 186.8 221 61.5
BcaB07g32450 Brassica carinata HOM05D002039 ORTHO05D005369 2.3e-45 186.4 225 62.7
Sp1g24580 Schrenkiella parvula HOM05D002039 ORTHO05D005369 3.0e-45 186.0 236 59.7
Manes.16G030250 Manihot esculenta HOM05D002039 ORTHO05D005369 3.9e-45 185.7 221 62.4
Actinidia16564 Actinidia chinensis HOM05D002039 ORTHO05D005369 5.0e-45 185.3 221 62.0
Aa31sc86G80 Aethionema arabicum HOM05D002039 ORTHO05D005369 5.0e-45 185.3 223 62.3
Gohir.D10G027700 Gossypium hirsutum HOM05D002039 ORTHO05D005369 5.0e-45 185.3 221 62.9
Gorai.011G029600 Gossypium raimondii HOM05D002039 ORTHO05D005369 5.0e-45 185.3 221 62.9
TPR.G16528 Trifolium pratense HOM05D002039 ORTHO05D005369 6.6e-45 184.9 232 60.8
CARHR027830 Cardamine hirsuta HOM05D002039 ORTHO05D005369 8.6e-45 184.5 225 60.9
ECA234G4172 Erigeron canadensis HOM05D002039 ORTHO05D005369 1.5e-44 183.7 222 62.6
vmacro03908 Vaccinium macrocarpon HOM05D002039 ORTHO05D005369 1.5e-44 183.7 232 59.5
COL.COLO4_31433 Corchorus olitorius HOM05D002039 ORTHO05D005369 2.5e-44 183.0 222 62.2
THA.LOC104820560 Tarenaya hassleriana HOM05D002039 ORTHO05D005369 4.3e-44 182.2 234 59.8
Gohir.A10G027300 Gossypium hirsutum HOM05D002039 ORTHO05D005369 7.3e-44 181.4 221 62.4
AL1G41940 Arabidopsis lyrata HOM05D002039 ORTHO05D005369 1.2e-43 180.6 223 61.9
MSTRG.15860 Avicennia marina HOM05D002039 ORTHO05D005369 1.6e-43 180.3 221 60.2
HanXRQChr16g0517651 Helianthus annuus HOM05D002039 ORTHO05D005369 1.6e-43 180.3 235 60.0
Ca_00353_v3 Cicer arietinum L. HOM05D002039 ORTHO05D005369 2.8e-43 179.5 232 59.9
Peaxi162Scf00243g00056 Petunia axillaris HOM05D002039 ORTHO05D005369 4.7e-43 178.7 223 59.2
Sabra11G0038600 Salix brachista HOM05D002039 ORTHO05D005369 4.7e-43 178.7 233 58.8
CiPaw.10G051500 Carya illinoinensis HOM05D002039 ORTHO05D005369 6.2e-43 178.3 221 61.5
Rhsim13G0179800 Rhododendron simsii HOM05D002039 ORTHO05D005369 6.2e-43 178.3 221 60.6
BcaC05g26843 Brassica carinata HOM05D002039 ORTHO05D005369 1.1e-42 177.6 224 61.2
Nitab4.5_0002219g0040 Nicotiana tabacum HOM05D002039 ORTHO05D005369 1.1e-42 177.6 223 58.7
Glyma.07G199500 Glycine max HOM05D002039 ORTHO05D005369 1.8e-42 176.8 222 61.3
TAR626G0341 Trochodendron aralioides HOM05D002039 ORTHO05D005369 2.3e-42 176.4 221 59.7
A09p37720 Brassica napus HOM05D002039 ORTHO05D005369 3.1e-42 176.0 224 61.2
BraA09t39283Z Brassica rapa HOM05D002039 ORTHO05D005369 3.1e-42 176.0 224 61.2
C05p27240 Brassica napus HOM05D002039 ORTHO05D005369 4.0e-42 175.6 224 60.7
BolC5t31438H Brassica oleracea HOM05D002039 ORTHO05D005369 4.0e-42 175.6 224 60.7
CSS0034765 Camellia sinensis var. sinensis HOM05D002039 ORTHO05D005369 4.0e-42 175.6 221 60.6
Nitab4.5_0008414g0030 Nicotiana tabacum HOM05D002039 ORTHO05D005369 5.2e-42 175.3 223 57.8
PGR004G1346 Punica granatum HOM05D002039 ORTHO05D005369 6.8e-42 174.9 234 57.7
Lalb_Chr20g0121641 Lupinus albus HOM05D002039 ORTHO05D005369 8.9e-42 174.5 222 61.3
Psat1g203480 Pisum sativum HOM05D002039 ORTHO05D005369 1.2e-41 174.1 227 59.0
CSS0048533 Camellia sinensis var. sinensis HOM05D002039 ORTHO05D005369 1.5e-41 173.7 221 58.8
Glyma.13G176900 Glycine max HOM05D002039 ORTHO05D005369 1.5e-41 173.7 222 60.8
MSTRG.7349 Avicennia marina HOM05D002039 ORTHO05D005369 9.8e-41 171.0 221 59.3
MD10G1291000 Malus domestica HOM05D002039 ORTHO05D005369 1.3e-40 170.6 223 61.0
RcHm_v2.0_Chr5g0008961 Rosa chinensis HOM05D002039 ORTHO05D005369 1.3e-40 170.6 233 57.9
Solyc02g077850.3 Solanum lycopersicum HOM05D002039 ORTHO05D005369 1.3e-40 170.6 223 57.8
Medtr2g014290 Medicago truncatula HOM05D002039 ORTHO05D005369 1.7e-40 170.2 233 58.4
Prupe.4G051100 Prunus persica HOM05D002039 ORTHO05D005369 2.9e-40 169.5 222 59.9
Nn1g06448 Nelumbo nucifera HOM05D002039 ORTHO05D005369 3.7e-40 169.1 235 57.0
Aqoxy1G02330 Aquilegia oxysepala HOM05D002039 ORTHO05D005369 4.9e-40 168.7 221 57.9
Peaxi162Scf00461g01116 Petunia axillaris HOM05D002039 ORTHO05D005369 4.9e-40 168.7 224 58.9
SGA_v2.0_scaffold22G09679 Striga asiatica HOM05D002039 ORTHO05D005369 4.9e-40 168.7 241 55.2
CAN.G529.28 Capsicum annuum HOM05D002039 ORTHO05D005369 8.3e-40 167.9 221 57.9
Nitab4.5_0000516g0120 Nicotiana tabacum HOM05D002039 ORTHO05D005369 8.3e-40 167.9 194 61.9
Eucgr.E03253 Eucalyptus grandis HOM05D002039 ORTHO05D005369 1.4e-39 167.2 221 58.8
Phvul.002G230800 Phaseolus vulgaris HOM05D002039 ORTHO05D005369 1.9e-39 166.8 222 59.9
PGSC0003DMG400029712 Solanum tuberosum HOM05D002039 ORTHO05D005369 1.9e-39 166.8 221 57.0
Lj6g0006997 Lotus japonicus HOM05D002039 ORTHO05D005369 3.2e-39 166.0 220 59.1
ClCG03G008070 Citrullus lanatus HOM05D002039 ORTHO05D005369 4.1e-39 165.6 241 43.2
MBI02_g32628_MAGBIO Magnolia biondii HOM05D002039 ORTHO05D005369 4.1e-39 165.6 234 56.0
Ah.09g237510 Amaranthus hybridus HOM05D002039 ORTHO05D005369 5.4e-39 165.2 234 57.3
Glyma.15G076900 Glycine max HOM05D002039 ORTHO05D005369 5.4e-39 165.2 222 59.5
Sc05g0007500 Simmondsia chinensis HOM05D002039 ORTHO05D005369 5.4e-39 165.2 221 58.4
VMungo0251G3185 Vigna mungo HOM05D002039 ORTHO05D005369 5.4e-39 165.2 230 58.7
VMungo0540G2072 Vigna mungo HOM05D002039 ORTHO05D005369 7.1e-39 164.9 223 59.2
CAN.G189.50 Capsicum annuum HOM05D002039 ORTHO05D005369 1.2e-38 164.1 226 56.6
PGSC0003DMG400012816 Solanum tuberosum HOM05D002039 ORTHO05D005369 1.2e-38 164.1 236 54.7
Atru.chr10.1813 Acer truncatum HOM05D002039 ORTHO05D005369 1.6e-38 163.7 221 59.7
Gohir.D09G072900 Gossypium hirsutum HOM05D002039 ORTHO05D005369 1.6e-38 163.7 211 56.9
SGA_v2.0_scaffold100G29704 Striga asiatica HOM05D002039 ORTHO05D005369 1.6e-38 163.7 221 55.7
Nn1g04176 Nelumbo nucifera HOM05D002039 ORTHO05D005369 2.1e-38 163.3 217 51.2
MELO3C002622.2 Cucumis melo HOM05D002039 ORTHO05D005369 6.0e-38 161.8 215 59.5
CsaV3_1G012480 Cucumis sativus L. HOM05D002039 ORTHO05D005369 7.8e-38 161.4 215 59.5
SalBow8G0156 Salvia bowleyana HOM05D002039 ORTHO05D005369 7.8e-38 161.4 200 59.0
Sopen03g002340 Solanum pennellii HOM05D002039 ORTHO05D005369 7.8e-38 161.4 236 55.1
Solyc03g006330.4 Solanum lycopersicum HOM05D002039 ORTHO05D005369 1.0e-37 161.0 236 55.1
Sopen02g022710 Solanum pennellii HOM05D002039 ORTHO05D005369 1.0e-37 161.0 221 56.1
Phvul.006G183300 Phaseolus vulgaris HOM05D002039 ORTHO05D005369 1.3e-37 160.6 226 58.0
Hma1.2p1_0208F.1_g088390 Hydrangea macrophylla HOM05D002039 ORTHO05D005369 1.7e-37 160.2 221 57.0
Lj4g0026541 Lotus japonicus HOM05D002039 ORTHO05D005369 3.9e-37 159.1 222 59.9
Glyma.13G236700 Glycine max HOM05D002039 ORTHO05D005369 1.5e-36 157.1 220 58.6
DCAR_003390 Daucus carota HOM05D002039 ORTHO05D005369 1.9e-36 156.8 197 60.9
Nitab4.5_0011102g0020 Nicotiana tabacum HOM05D002039 ORTHO05D005369 5.6e-36 155.2 145 73.1
AUR62017049 Chenopodium quinoa HOM05D002039 ORTHO05D005369 4.7e-35 152.1 235 53.2
EL10Ac8g20423 Beta vulgaris HOM05D002039 ORTHO05D005369 8.1e-35 151.4 221 56.6
ATR0763G230 Amborella trichopoda HOM05D002039 ORTHO05D005369 2.3e-34 149.8 221 54.8
arahy.Tifrunner.gnm1.ann1.61YHCL Arachis hypogaea HOM05D002039 ORTHO05D005369 1.2e-33 147.5 221 55.7
AUR62014853 Chenopodium quinoa HOM05D002039 ORTHO05D005369 1.5e-33 147.1 234 51.7
PSO541G3961 Papaver somniferum HOM05D002039 ORTHO05D005369 9.9e-33 144.4 221 52.9
PSO675G8387 Papaver somniferum HOM05D002039 ORTHO05D005369 5.4e-31 138.7 221 52.0
HPP92_014191 Vanilla planifolia HOM05D002039 ORTHO05D005369 9.2e-31 137.9 237 50.6
Os07g0501800 Oryza sativa ssp. japonica HOM05D002039 ORTHO05D005369 2.7e-30 136.3 221 52.5
Hund21210 Selenicereus undatus HOM05D002039 ORTHO05D005369 1.0e-29 134.4 158 63.9
SEGI_16004 Sequoiadendron giganteum HOM05D002039 ORTHO05D005369 2.3e-29 133.3 221 49.3
TWI38G1298 Tripterygium wilfordii HOM05D002039 ORTHO05D005369 6.6e-29 131.7 159 64.2
DCAR_004055 Daucus carota HOM05D002039 ORTHO05D005369 1.1e-28 131.0 125 55.2
Zm00001eb322150 Zea mays HOM05D002039 ORTHO05D005369 1.1e-28 131.0 136 52.2
arahy.Tifrunner.gnm1.ann1.TT4JII Arachis hypogaea HOM05D002039 ORTHO05D005369 9.6e-28 127.9 136 53.7
Ah.14g089640 Amaranthus hybridus HOM05D005633 ORTHO05D007003 1.2e-27 127.5 124 54.8
CDE01G0283 Ceratophyllum demersum HOM05D002039 ORTHO05D005369 1.1e-26 124.4 132 53.0
Gorai.006G087900 Gossypium raimondii HOM05D002039 ORTHO05D005369 4.0e-26 122.5 157 63.1
Gohir.A09G073200 Gossypium hirsutum HOM05D002039 ORTHO05D005369 8.9e-26 121.3 158 62.0
TAR636G0948 Trochodendron aralioides HOM05D000101 ORTHO05D000089 6.0e-22 108.6 111 51.4
DCAR_024226 Daucus carota HOM05D002069 ORTHO05D001421 3.9e-21 105.9 105 52.4
Hund23784 Selenicereus undatus HOM05D002039 ORTHO05D005369 1.3e-19 100.9 111 50.5
FAN11G1708 Fragaria x ananassa HOM05D002039 ORTHO05D005369 1.5e-17 94.0 140 41.4
FAN16G0204 Fragaria x ananassa HOM05D002039 ORTHO05D005369 3.4e-17 92.8 140 40.7
FAN25G2208 Fragaria x ananassa HOM05D002039 ORTHO05D005369 6.4e-16 88.6 140 40.0
FAN21G1480 Fragaria x ananassa HOM05D002039 ORTHO05D005369 2.4e-15 86.7 155 37.4
Psat4g204200 Pisum sativum HOM05D002039 ORTHO05D005369 2.5e-12 76.6 130 60.8
arahy.Tifrunner.gnm1.ann1.V7QGVL Arachis hypogaea HOM05D002039 ORTHO05D026939 2.4e-10 70.1 52 63.5
Mapoly0037s0073 Marchantia polymorpha HOM05D002039 ORTHO05D005369 9.0e-10 68.2 209 43.1
arahy.Tifrunner.gnm1.ann1.DG5TA8 Arachis hypogaea HOM05D002039 ORTHO05D083419 3.4e-09 66.2 50 62.0
CDE02G1413 Ceratophyllum demersum HOM05D002039 ORTHO05D026939 5.8e-09 65.5 163 28.8
Pp3c16_5720 Physcomitrium patens HOM05D002039 ORTHO05D005369 8.4e-08 61.6 117 36.8
Pp3c9_7920 Physcomitrium patens HOM05D002039 ORTHO05D005369 1.4e-07 60.8 134 35.8
AagrBONN_evm.TU.Sc2ySwM_344.4839 Anthoceros agrestis HOM05D002039 ORTHO05D005369 1.9e-07 60.5 117 35.9
arahy.Tifrunner.gnm1.ann1.L8ME0D Arachis hypogaea HOM05D002039 ORTHO05D026939 1.9e-07 60.5 32 81.2
arahy.Tifrunner.gnm1.ann1.WU9FE7 Arachis hypogaea HOM05D002039 ORTHO05D026939 3.2e-07 59.7 28 89.3
Pp3c2_37290 Physcomitrium patens HOM05D002039 ORTHO05D005369 1.2e-06 57.8 111 37.8
SGA_v2.0_scaffold14G06828 Striga asiatica HOM05D002039 ORTHO05D005834 2.7e-06 56.6 130 33.1
AL1G39730 Arabidopsis lyrata HOM05D002039 ORTHO05D005834 3.5e-06 56.2 161 39.1
Carub.0001s2491 Capsella rubella HOM05D002039 ORTHO05D005834 4.6e-06 55.8 161 39.1
AT1G25570 Arabidopsis thaliana HOM05D002039 ORTHO05D005834 7.9e-06 55.1 161 39.1


User provided reference genes

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