Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc27.149 Carica papaya HOM05D003506 ORTHO05D004063 5.3e-153 544.3 265 100.0
Cpa.g.sc27.153 Carica papaya HOM05D003506 ORTHO05D004063 8.7e-140 500.4 253 97.6
Cpa.g.sc27.145 Carica papaya HOM05D003506 ORTHO05D004063 4.4e-99 365.2 253 73.5
Cpa.g.sc27.152 Carica papaya HOM05D003506 ORTHO05D004063 9.8e-99 364.0 253 73.9
Cpa.g.sc27.147 Carica papaya HOM05D003506 ORTHO05D004063 2.2e-98 362.8 255 73.3
Cpa.g.sc27.142 Carica papaya HOM05D003506 ORTHO05D004063 3.0e-92 342.4 253 69.6
Cpa.g.sc727.3 Carica papaya HOM05D003506 ORTHO05D004063 7.0e-81 304.7 204 74.5
Cpa.g.sc27.155 Carica papaya HOM05D003506 ORTHO05D004063 6.0e-32 142.1 192 47.4
CSS0017703 Camellia sinensis var. sinensis HOM05D003506 ORTHO05D004063 4.5e-27 125.9 225 33.3
Hma1.2p1_2475F.1_g322790 Hydrangea macrophylla HOM05D003506 ORTHO05D004063 8.7e-23 111.7 234 33.3
CSS0002170 Camellia sinensis var. sinensis HOM05D003506 ORTHO05D004063 4.3e-22 109.4 231 30.7
FAN14G0755 Fragaria x ananassa HOM05D003506 ORTHO05D004063 4.3e-22 109.4 236 32.6
Lj1A1215T59 Lonicera japonica HOM05D003506 ORTHO05D004063 8.2e-21 105.1 234 29.9
FvH4_6g22120 Fragaria vesca HOM05D003506 ORTHO05D004063 1.1e-20 104.8 236 31.8
CSS0044487 Camellia sinensis var. sinensis HOM05D003506 ORTHO05D004063 1.4e-20 104.4 231 30.3
QL12p010549 Quercus lobata HOM05D003506 ORTHO05D004063 1.8e-20 104.0 230 32.6
Cc02_g12220 Coffea canephora HOM05D003506 ORTHO05D004063 2.4e-20 103.6 213 29.1
QL12p009886 Quercus lobata HOM05D003506 ORTHO05D004063 4.1e-20 102.8 230 32.2
DCAR_013527 Daucus carota HOM05D003506 ORTHO05D004063 1.0e-18 98.2 228 29.8
Prupe.7G078000 Prunus persica HOM05D003506 ORTHO05D004063 1.7e-18 97.4 238 33.6
QL12p010090 Quercus lobata HOM05D003506 ORTHO05D004063 2.2e-18 97.1 259 33.2
Cc05_g09100 Coffea canephora HOM05D003506 ORTHO05D004063 3.8e-18 96.3 212 32.1
Dinv40460 Davidia involucrata HOM05D003506 ORTHO05D004063 1.1e-17 94.7 196 30.6
RcHm_v2.0_Chr3g0479451 Rosa chinensis HOM05D003506 ORTHO05D004063 3.2e-17 93.2 228 33.8
Rhsim03G0013200 Rhododendron simsii HOM05D003506 ORTHO05D004063 4.2e-17 92.8 259 29.0
Actinidia20129 Actinidia chinensis HOM05D003506 ORTHO05D004063 9.4e-17 91.7 223 30.0
CiPaw.12G027400 Carya illinoinensis HOM05D003506 ORTHO05D004063 3.6e-16 89.7 228 32.0
Actinidia26982 Actinidia chinensis HOM05D003506 ORTHO05D004063 4.6e-16 89.4 232 30.2
Rhsim03G0013700 Rhododendron simsii HOM05D003506 ORTHO05D004063 7.9e-16 88.6 263 27.0
Potri.003G101000 Populus trichocarpa HOM05D003506 ORTHO05D004063 1.0e-15 88.2 224 31.7
Haze_19427 Corylus avellana HOM05D003506 ORTHO05D004063 1.8e-15 87.4 257 30.7
Gohir.A12G203900 Gossypium hirsutum HOM05D003506 ORTHO05D004063 3.0e-15 86.7 235 31.1
Gorai.004G181200 Gossypium raimondii HOM05D003506 ORTHO05D004063 8.8e-15 85.1 230 30.4
RhsimUnG0207500 Rhododendron simsii HOM05D003506 ORTHO05D004063 1.1e-14 84.7 171 31.6
Gorai.008G221500 Gossypium raimondii HOM05D003506 ORTHO05D004063 4.3e-14 82.8 239 28.0
TWI60G1006 Tripterygium wilfordii HOM05D003506 ORTHO05D004063 5.7e-14 82.4 272 29.4
Gohir.D08G173500 Gossypium hirsutum HOM05D003506 ORTHO05D004063 7.4e-14 82.0 229 27.9
Rhsim03G0012900 Rhododendron simsii HOM05D003506 ORTHO05D004063 7.4e-14 82.0 120 36.7
Rhsim03G0013500 Rhododendron simsii HOM05D003506 ORTHO05D004063 7.4e-14 82.0 120 36.7
DCAR_009112 Daucus carota HOM05D003506 ORTHO05D004063 1.3e-13 81.3 260 26.5
Gohir.D12G206300 Gossypium hirsutum HOM05D003506 ORTHO05D004063 1.3e-13 81.3 236 27.1
Gohir.A08G152600 Gossypium hirsutum HOM05D003506 ORTHO05D004063 1.7e-13 80.9 274 29.2
Cc00_g30260 Coffea canephora HOM05D003506 ORTHO05D004063 8.2e-13 78.6 268 25.0
THA.LOC104798470 Tarenaya hassleriana HOM05D002287 ORTHO05D004063 1.8e-12 77.4 231 28.6
Cfa001536 Carpinus fangiana HOM05D003506 ORTHO05D004063 2.4e-12 77.0 277 29.6
Haze_19428 Corylus avellana HOM05D003506 ORTHO05D004063 6.9e-12 75.5 240 27.9
Nitab4.5_0009286g0010 Nicotiana tabacum HOM05D000011 ORTHO05D016881 6.9e-12 75.5 216 31.0
CARHR176610 Cardamine hirsuta HOM05D003506 ORTHO05D004063 1.2e-11 74.7 129 34.1
Cc00_g10090 Coffea canephora HOM05D003506 ORTHO05D004063 1.2e-11 74.7 225 28.0
CiPaw.11G083500 Carya illinoinensis HOM05D003506 ORTHO05D004063 1.5e-11 74.3 187 29.9
Atru.chr2.1020 Acer truncatum HOM05D003506 ORTHO05D004063 3.4e-11 73.2 140 38.6
PGR044G0363 Punica granatum HOM05D003506 ORTHO05D004063 5.9e-11 72.4 264 28.0
Atru.chr2.1044 Acer truncatum HOM05D003506 ORTHO05D004063 7.7e-11 72.0 140 37.1
Atru.chr2.1027 Acer truncatum HOM05D003506 ORTHO05D004063 1.3e-10 71.2 131 36.6
MBI15_g37110_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000018 1.3e-10 71.2 198 29.3
Atru.chr2.2548 Acer truncatum HOM05D003506 ORTHO05D004063 2.2e-10 70.5 250 29.2
PGR042G2042 Punica granatum HOM05D003506 ORTHO05D004063 2.2e-10 70.5 247 28.7
Thecc.07G137600 Theobroma cacao HOM05D000101 ORTHO05D000089 2.2e-10 70.5 221 24.0
Actinidia11820 Actinidia chinensis HOM05D003506 ORTHO05D006958 3.8e-10 69.7 121 33.9
Gohir.D01G058200 Gossypium hirsutum HOM05D000101 ORTHO05D000089 1.4e-09 67.8 260 26.9
MBI15_g06350_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000018 1.4e-09 67.8 236 27.1
PGR042G2755 Punica granatum HOM05D003506 ORTHO05D004063 1.4e-09 67.8 260 26.2
MBI15_g42839_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000018 1.9e-09 67.4 134 32.8
Eucgr.E03688 Eucalyptus grandis HOM05D003506 ORTHO05D004063 2.5e-09 67.0 110 34.5
BcaNung04016 Brassica carinata HOM05D003506 ORTHO05D004063 9.4e-09 65.1 111 34.2
Cc00_g21830 Coffea canephora HOM05D003506 ORTHO05D004063 1.2e-08 64.7 133 29.3
Eucgr.D00770 Eucalyptus grandis HOM05D003506 ORTHO05D004063 1.2e-08 64.7 107 34.6
Nn7g37688 Nelumbo nucifera HOM05D003506 ORTHO05D004063 2.7e-08 63.5 230 27.4
CiPaw.12G027300 Carya illinoinensis HOM05D003506 ORTHO05D004063 3.6e-08 63.2 89 33.7
Nitab4.5_0005032g0020 Nicotiana tabacum HOM05D016457 ORTHO05D016874 3.6e-08 63.2 133 31.6
Lsat_1_v5_gn_1_90121 Lactuca sativa HOM05D000009 ORTHO05D000008 4.7e-08 62.8 230 25.7
Nitab4.5_0004324g0010 Nicotiana tabacum HOM05D000011 ORTHO05D000018 4.7e-08 62.8 202 26.2
Gohir.A11G281900 Gossypium hirsutum HOM05D000101 ORTHO05D000089 6.1e-08 62.4 216 25.9
Nitab4.5_0008184g0010 Nicotiana tabacum HOM05D000011 ORTHO05D016874 6.1e-08 62.4 202 26.2
Carub.0007s2209 Capsella rubella HOM05D003506 ORTHO05D004063 7.9e-08 62.0 188 30.3
AL8G13340 Arabidopsis lyrata HOM05D003506 ORTHO05D004063 1.0e-07 61.6 81 44.4
CAN.G1357.6 Capsicum annuum HOM05D000011 ORTHO05D000018 1.0e-07 61.6 206 25.7
Nitab4.5_0019677g0010 Nicotiana tabacum HOM05D016457 ORTHO05D016874 1.0e-07 61.6 133 31.6
Os03g0599000 Oryza sativa ssp. japonica HOM05D000009 ORTHO05D000008 1.0e-07 61.6 183 25.7
PGSC0003DMG400013165 Solanum tuberosum HOM05D000092 ORTHO05D000042 1.4e-07 61.2 221 24.9
Manes.09G034700 Manihot esculenta HOM05D000011 ORTHO05D000018 1.8e-07 60.8 196 26.0
Cpa.g.sc76.7 Carica papaya HOM05D003506 ORTHO05D004063 2.3e-07 60.5 43 69.8
Cc00_g09280 Coffea canephora HOM05D000011 ORTHO05D000157 2.3e-07 60.5 219 26.5
Gohir.D11G294500 Gossypium hirsutum HOM05D000101 ORTHO05D000089 2.3e-07 60.5 218 25.7
Gorai.007G317700 Gossypium raimondii HOM05D000101 ORTHO05D000089 2.3e-07 60.5 218 25.7
Nitab4.5_0006120g0050 Nicotiana tabacum HOM05D000011 ORTHO05D016881 2.3e-07 60.5 214 25.2
CAN.G656.35 Capsicum annuum HOM05D000011 ORTHO05D000018 3.0e-07 60.1 208 27.4
Cfa001535 Carpinus fangiana HOM05D003506 ORTHO05D004063 3.0e-07 60.1 186 28.5
MBI02_g29700_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D000089 3.0e-07 60.1 248 22.6
RcHm_v2.0_Chr1g0320661 Rosa chinensis HOM05D000009 ORTHO05D000008 3.0e-07 60.1 239 25.5
Atru.chr2.1012 Acer truncatum HOM05D003506 ORTHO05D004063 3.9e-07 59.7 170 31.2
CAN.G1084.3 Capsicum annuum HOM05D000011 ORTHO05D000018 3.9e-07 59.7 204 25.0
QL10p054822 Quercus lobata HOM05D000101 ORTHO05D003282 3.9e-07 59.7 226 25.2
AT4G19050 Arabidopsis thaliana HOM05D003506 ORTHO05D004063 5.1e-07 59.3 227 29.5
Nitab4.5_0004079g0010 Nicotiana tabacum HOM05D000011 ORTHO05D016881 5.1e-07 59.3 218 25.2
Nitab4.5_0007534g0020 Nicotiana tabacum HOM05D000011 ORTHO05D000018 5.1e-07 59.3 200 25.0
Aqoxy1G03477 Aquilegia oxysepala HOM05D000101 ORTHO05D004063 6.7e-07 58.9 210 25.7
MSTRG.9448 Avicennia marina HOM05D000101 ORTHO05D000089 6.7e-07 58.9 227 23.8
HanXRQChr01g0003761 Helianthus annuus HOM05D003506 ORTHO05D004063 6.7e-07 58.9 190 26.8
Nitab4.5_0007686g0050 Nicotiana tabacum HOM05D000011 ORTHO05D000018 6.7e-07 58.9 200 25.5
Psat0s5172g0040 Pisum sativum HOM05D000101 ORTHO05D000089 6.7e-07 58.9 226 28.8
Psat7g108120 Pisum sativum HOM05D000101 ORTHO05D000089 6.7e-07 58.9 226 28.8
Thecc.07G061600 Theobroma cacao HOM05D000101 ORTHO05D000089 6.7e-07 58.9 215 25.6
BcaC09g51442 Brassica carinata HOM05D003506 ORTHO05D004063 8.8e-07 58.5 218 28.9
C01p13080 Brassica napus HOM05D003506 ORTHO05D004063 8.8e-07 58.5 218 28.9
BolC1t01282H Brassica oleracea HOM05D003506 ORTHO05D004063 8.8e-07 58.5 218 28.9
Thecc.07G061800 Theobroma cacao HOM05D000101 ORTHO05D000089 8.8e-07 58.5 227 26.0
Aqoxy1G04209 Aquilegia oxysepala HOM05D003506 ORTHO05D004063 1.1e-06 58.2 222 27.5
Eucgr.F00546 Eucalyptus grandis HOM05D000101 ORTHO05D000089 1.1e-06 58.2 229 21.8
Eucgr.G01790 Eucalyptus grandis HOM05D000009 ORTHO05D000008 1.1e-06 58.2 226 25.7
Thecc.07G072600 Theobroma cacao HOM05D000101 ORTHO05D000089 1.1e-06 58.2 215 26.0
Thecc.10G033300 Theobroma cacao HOM05D000011 ORTHO05D000018 1.1e-06 58.2 184 29.3
BcaNung04011 Brassica carinata HOM05D003506 ORTHO05D004063 1.5e-06 57.8 206 29.6
CAN.G1373.18 Capsicum annuum HOM05D000011 ORTHO05D000018 1.5e-06 57.8 205 24.9
CiPaw.11G100300 Carya illinoinensis HOM05D000011 ORTHO05D000157 1.5e-06 57.8 215 28.4
Dinv29756 Davidia involucrata HOM05D000011 ORTHO05D000018 1.5e-06 57.8 174 27.0
Thhalv10000747m.g Eutrema salsugineum HOM05D000005 ORTHO05D013676 1.5e-06 57.8 206 24.8
Manes.10G022500 Manihot esculenta HOM05D000011 ORTHO05D000018 1.5e-06 57.8 234 25.2
Nn7g36881 Nelumbo nucifera HOM05D000011 ORTHO05D000157 1.5e-06 57.8 209 26.3
Nitab4.5_0007686g0040 Nicotiana tabacum HOM05D000011 ORTHO05D000018 1.5e-06 57.8 209 25.8
Carub.0002s0398 Capsella rubella HOM05D000101 ORTHO05D000089 2.0e-06 57.4 225 25.8
Cc03_g09550 Coffea canephora HOM05D000011 ORTHO05D000018 2.0e-06 57.4 180 27.2
SEGI_24033 Sequoiadendron giganteum HOM05D000011 ORTHO05D000239 2.0e-06 57.4 235 24.3
THA.LOC104806185 Tarenaya hassleriana HOM05D003506 ORTHO05D004063 2.0e-06 57.4 137 33.6
ATR1149G072 Amborella trichopoda HOM05D000011 ORTHO05D000157 2.6e-06 57.0 212 25.5
CiPaw.11G100600 Carya illinoinensis HOM05D000011 ORTHO05D000157 2.6e-06 57.0 216 27.3
AUR62044088 Chenopodium quinoa HOM05D000011 ORTHO05D002639 2.6e-06 57.0 169 26.6
ECA248G3402 Erigeron canadensis HOM05D000009 ORTHO05D000008 2.6e-06 57.0 231 27.3
MBI15_g25908_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000018 2.6e-06 57.0 198 26.3
QL05p066331 Quercus lobata HOM05D000011 ORTHO05D000018 2.6e-06 57.0 187 25.1
Thecc.07G057600 Theobroma cacao HOM05D000101 ORTHO05D000089 2.6e-06 57.0 217 25.8
Thecc.07G072300 Theobroma cacao HOM05D000101 ORTHO05D000089 2.6e-06 57.0 227 23.8
Cc07_g20460 Coffea canephora HOM05D000011 ORTHO05D000018 3.3e-06 56.6 192 29.2
Gohir.D10G236200 Gossypium hirsutum HOM05D000011 ORTHO05D000018 3.3e-06 56.6 232 24.1
Peaxi162Scf00423g00022 Petunia axillaris HOM05D000011 ORTHO05D015719 3.3e-06 56.6 169 28.4
AT1G61300 Arabidopsis thaliana HOM05D000101 ORTHO05D000089 4.4e-06 56.2 225 25.8
arahy.Tifrunner.gnm1.ann1.GM4B0I Arachis hypogaea HOM05D000011 ORTHO05D000018 4.4e-06 56.2 141 27.7
arahy.Tifrunner.gnm1.ann1.ZXBW87 Arachis hypogaea HOM05D000011 ORTHO05D000018 4.4e-06 56.2 141 27.7
Carub.0008s0262 Capsella rubella HOM05D003506 ORTHO05D004063 4.4e-06 56.2 108 33.3
Cc00_g08280 Coffea canephora HOM05D000011 ORTHO05D000157 4.4e-06 56.2 232 25.0
Cc07_g20790 Coffea canephora HOM05D000011 ORTHO05D000018 4.4e-06 56.2 168 28.0
ECA248G0602 Erigeron canadensis HOM05D000009 ORTHO05D000008 4.4e-06 56.2 231 27.3
Thhalv10024259m.g Eutrema salsugineum HOM05D003506 ORTHO05D004063 4.4e-06 56.2 247 26.3
Lj6C219T1 Lonicera japonica HOM05D000092 ORTHO05D000042 4.4e-06 56.2 226 27.9
MD17G1025700 Malus domestica HOM05D000011 ORTHO05D002639 4.4e-06 56.2 204 27.9
RcHm_v2.0_Chr1g0320281 Rosa chinensis HOM05D000009 ORTHO05D000008 4.4e-06 56.2 235 26.4
Thecc.10G028000 Theobroma cacao HOM05D000011 ORTHO05D000018 4.4e-06 56.2 194 25.8
Duzib213G0867 Durio zibethinus HOM05D000101 ORTHO05D000089 5.7e-06 55.8 253 24.5
Gohir.D05G352800 Gossypium hirsutum HOM05D000101 ORTHO05D000089 5.7e-06 55.8 242 24.0
Lj6C201T1 Lonicera japonica HOM05D000092 ORTHO05D000042 5.7e-06 55.8 222 25.2
Manes.10G023200 Manihot esculenta HOM05D000011 ORTHO05D000018 5.7e-06 55.8 240 25.0
Nitab4.5_0003106g0040 Nicotiana tabacum HOM05D000011 ORTHO05D000018 5.7e-06 55.8 230 26.5
RcHm_v2.0_Chr1g0319741 Rosa chinensis HOM05D000009 ORTHO05D000008 5.7e-06 55.8 235 25.5
SalBow6G7004 Salvia bowleyana HOM05D000011 ORTHO05D000018 5.7e-06 55.8 217 26.7
Sopen05g032810 Solanum pennellii HOM05D000011 ORTHO05D001721 5.7e-06 55.8 173 26.0
Aa31LG2G12070 Aethionema arabicum HOM05D000011 ORTHO05D000018 7.4e-06 55.5 184 26.6
Aqoxy4G01420 Aquilegia oxysepala HOM05D000101 ORTHO05D000089 7.4e-06 55.5 210 25.2
arahy.Tifrunner.gnm1.ann1.0E6JXZ Arachis hypogaea HOM05D000011 ORTHO05D000018 7.4e-06 55.5 212 25.5
CAN.G551.112 Capsicum annuum HOM05D000011 ORTHO05D000018 7.4e-06 55.5 121 31.4
Cc00_g10170 Coffea canephora HOM05D000011 ORTHO05D000018 7.4e-06 55.5 168 26.8
Cc11_g03400 Coffea canephora HOM05D000011 ORTHO05D000157 7.4e-06 55.5 223 26.5
DCAR_004876 Daucus carota HOM05D000011 ORTHO05D000018 7.4e-06 55.5 187 26.7
MBI15_g36004_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000018 7.4e-06 55.5 206 28.2
Aqoxy1G03504 Aquilegia oxysepala HOM05D000101 ORTHO05D000089 9.7e-06 55.1 210 24.8
BraA01t01053Z Brassica rapa HOM05D003506 ORTHO05D004063 9.7e-06 55.1 228 28.1
CAN.G707.14 Capsicum annuum HOM05D000011 ORTHO05D000018 9.7e-06 55.1 227 22.5
Gohir.A08G055500 Gossypium hirsutum HOM05D000009 ORTHO05D000008 9.7e-06 55.1 138 29.7
Gorai.004G067100 Gossypium raimondii HOM05D000009 ORTHO05D000008 9.7e-06 55.1 138 29.7
HanXRQChr13g0419001 Helianthus annuus HOM05D000009 ORTHO05D000008 9.7e-06 55.1 224 24.1
MBI18_g26661_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D000089 9.7e-06 55.1 230 23.9
Prupe.8G011900 Prunus persica HOM05D000101 ORTHO05D003282 9.7e-06 55.1 88 35.2
SGA_v2.0_scaffold71G23791 Striga asiatica HOM05D000011 ORTHO05D000018 9.7e-06 55.1 197 25.4
TPR.G40281 Trifolium pratense HOM05D000101 ORTHO05D000089 9.7e-06 55.1 179 28.5
GSVIVG01017136001 Vitis vinifera HOM05D000101 ORTHO05D000089 9.7e-06 55.1 212 25.5


User provided reference genes

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