Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc27.138 Carica papaya HOM05D000451 ORTHO05D014276 9.4e-134 480.3 266 100.0
Ciclev10018309m.g Citrus clementina HOM05D000451 ORTHO05D000351 3.8e-74 282.3 266 60.2
Manes.16G019400 Manihot esculenta HOM05D000451 ORTHO05D000351 5.4e-73 278.5 283 59.0
Gorai.011G024000 Gossypium raimondii HOM05D000451 ORTHO05D000351 1.3e-71 273.9 286 65.0
Gohir.A10G022100 Gossypium hirsutum HOM05D000451 ORTHO05D000351 1.7e-71 273.5 289 64.7
THA.LOC104806269 Tarenaya hassleriana HOM05D000451 ORTHO05D000351 3.9e-71 272.3 263 60.5
Duzib235G0293 Durio zibethinus HOM05D000451 ORTHO05D000351 1.1e-70 270.8 284 54.2
Thecc.06G201800 Theobroma cacao HOM05D000451 ORTHO05D000351 1.9e-70 270.0 281 56.9
Gohir.D10G022900 Gossypium hirsutum HOM05D000451 ORTHO05D000351 1.2e-67 260.8 288 63.9
Duzib160G0721 Durio zibethinus HOM05D000451 ORTHO05D000351 3.4e-67 259.2 283 59.7
AL7G32650 Arabidopsis lyrata HOM05D000451 ORTHO05D000351 5.8e-67 258.5 266 56.0
Manes.17G033900 Manihot esculenta HOM05D000451 ORTHO05D000351 7.6e-67 258.1 288 55.2
AT4G21430 Arabidopsis thaliana HOM05D000451 ORTHO05D000351 5.4e-65 251.9 266 52.3
TWI63G1167 Tripterygium wilfordii HOM05D000451 ORTHO05D000351 7.1e-65 251.5 263 60.5
Thhalv10024332m.g Eutrema salsugineum HOM05D000451 ORTHO05D000351 4.6e-64 248.8 267 57.3
Aa31LG6G3440 Aethionema arabicum HOM05D000451 ORTHO05D000351 1.0e-63 247.7 266 51.9
Carub.0007s2000 Capsella rubella HOM05D000451 ORTHO05D000351 6.6e-63 245.0 266 50.8
Haze_06592 Corylus avellana HOM05D000451 ORTHO05D000351 2.5e-62 243.0 288 56.9
Sp7g19550 Schrenkiella parvula HOM05D000451 ORTHO05D000351 9.6e-62 241.1 267 50.6
Cfa000339 Carpinus fangiana HOM05D000451 ORTHO05D000351 1.3e-61 240.7 284 57.4
Actinidia26986 Actinidia chinensis HOM05D000774 ORTHO05D000602 1.6e-61 240.4 268 49.3
Rhsim13G0169100 Rhododendron simsii HOM05D000451 ORTHO05D000351 6.2e-61 238.4 273 49.1
vmacro03801 Vaccinium macrocarpon HOM05D000451 ORTHO05D000351 1.4e-60 237.3 276 47.5
GSVIVG01003670001 Vitis vinifera HOM05D000451 ORTHO05D014276 7.6e-59 231.5 271 50.2
TAR629G3465 Trochodendron aralioides HOM05D000451 ORTHO05D000351 1.3e-58 230.7 267 47.2
Sed0011802 Sechium edule HOM05D000451 ORTHO05D000351 4.9e-58 228.8 268 52.6
Dinv40468 Davidia involucrata HOM05D000451 ORTHO05D000351 8.4e-58 228.0 268 49.3
ClCG01G022420 Citrullus lanatus HOM05D000451 ORTHO05D000351 7.1e-57 224.9 267 48.3
Peaxi162Scf01391g00216 Petunia axillaris HOM05D000451 ORTHO05D000351 7.1e-57 224.9 268 48.5
MD10G1304800 Malus domestica HOM05D000451 ORTHO05D000351 1.3e-55 220.7 280 57.5
Solyc02g079300.3 Solanum lycopersicum HOM05D000451 ORTHO05D000351 1.9e-54 216.9 277 45.5
Sopen02g024120 Solanum pennellii HOM05D000451 ORTHO05D000351 1.9e-54 216.9 277 45.5
Prupe.4G034800 Prunus persica HOM05D000451 ORTHO05D000351 4.3e-54 215.7 278 54.3
Phvul.002G220900 Phaseolus vulgaris HOM05D000451 ORTHO05D000351 7.4e-54 214.9 274 55.8
QL05p080957 Quercus lobata HOM05D000451 ORTHO05D000351 7.4e-54 214.9 292 53.4
MD05G1326700 Malus domestica HOM05D000451 ORTHO05D000351 9.6e-54 214.5 279 56.6
Potri.011G041400 Populus trichocarpa HOM05D000451 ORTHO05D000351 2.1e-53 213.4 279 54.5
Oeu016132.1 Olea europaea HOM05D000451 ORTHO05D000351 4.8e-53 212.2 264 48.1
Oeu050817.1 Olea europaea HOM05D000451 ORTHO05D000351 6.9e-52 208.4 260 46.9
CsaV3_6G049610 Cucumis sativus L. HOM05D000451 ORTHO05D000351 1.2e-51 207.6 267 46.4
Nn1g03849 Nelumbo nucifera HOM05D000451 ORTHO05D000351 2.0e-51 206.8 272 44.1
Potri.004G032700 Populus trichocarpa HOM05D000451 ORTHO05D000351 2.0e-51 206.8 282 51.8
MELO3C007332.2 Cucumis melo HOM05D000451 ORTHO05D000351 2.6e-51 206.5 267 46.4
Hma1.2p1_1515F.1_g288170 Hydrangea macrophylla HOM05D000451 ORTHO05D000351 4.5e-51 205.7 270 49.6
A03p52750 Brassica napus HOM05D000451 ORTHO05D000351 7.6e-51 204.9 267 47.2
Lalb_Chr05g0218121 Lupinus albus HOM05D000451 ORTHO05D000351 7.6e-51 204.9 271 52.0
Cc02_g12300 Coffea canephora HOM05D000451 ORTHO05D000351 9.9e-51 204.5 264 49.2
BcaC06g30662 Brassica carinata HOM05D000451 ORTHO05D000351 1.7e-50 203.8 272 48.2
BraA03t14349Z Brassica rapa HOM05D000451 ORTHO05D000351 3.8e-50 202.6 267 46.8
PGR004G0305 Punica granatum HOM05D000451 ORTHO05D000351 3.8e-50 202.6 271 44.6
PGR038G0004 Punica granatum HOM05D000451 ORTHO05D000351 3.8e-50 202.6 271 44.6
RcHm_v2.0_Chr5g0005871 Rosa chinensis HOM05D000451 ORTHO05D000351 6.4e-50 201.8 291 46.7
Sabra04G0018800 Salix brachista HOM05D000451 ORTHO05D000351 1.1e-49 201.1 282 50.0
C07p51180 Brassica napus HOM05D000451 ORTHO05D000351 2.4e-49 199.9 267 45.7
BcaNung02800 Brassica carinata HOM05D000451 ORTHO05D000351 5.5e-49 198.7 267 49.4
BolC7t45620H Brassica oleracea HOM05D000451 ORTHO05D000351 5.5e-49 198.7 267 45.7
Nitab4.5_0000649g0130 Nicotiana tabacum HOM05D000451 ORTHO05D000351 1.6e-48 197.2 252 46.8
Sabra11G0028300 Salix brachista HOM05D000451 ORTHO05D000351 7.9e-48 194.9 265 52.8
unitig_0.g939 Utricularia gibba HOM05D000451 ORTHO05D000351 1.3e-47 194.1 270 47.4
arahy.Tifrunner.gnm1.ann1.AKBJ55 Arachis hypogaea HOM05D000451 ORTHO05D000351 3.0e-47 193.0 290 50.7
Lj4g0018925 Lotus japonicus HOM05D000451 ORTHO05D000351 3.9e-47 192.6 280 51.8
Sed0002365 Sechium edule HOM05D000451 ORTHO05D000351 3.9e-47 192.6 267 43.4
A01p12740 Brassica napus HOM05D000451 ORTHO05D000351 5.1e-47 192.2 267 49.1
BraA01t01217Z Brassica rapa HOM05D000451 ORTHO05D000351 6.7e-47 191.8 267 49.1
Glyma.07G189100 Glycine max HOM05D000451 ORTHO05D000351 1.5e-46 190.7 278 49.6
Glyma.08G060200 Glycine max HOM05D000451 ORTHO05D000351 1.9e-46 190.3 291 48.1
FAN11G3058 Fragaria x ananassa HOM05D000451 ORTHO05D000351 2.5e-46 189.9 295 48.8
arahy.Tifrunner.gnm1.ann1.BL8W3W Arachis hypogaea HOM05D000451 ORTHO05D000351 4.3e-46 189.1 286 51.7
Migut.H01525 Erythranthe guttata HOM05D000451 ORTHO05D000351 5.6e-46 188.7 274 42.3
FAN16G2895 Fragaria x ananassa HOM05D000451 ORTHO05D000351 9.6e-46 188.0 292 49.0
CANSAT56G1620 Cannabis sativa HOM05D000451 ORTHO05D000351 1.3e-45 187.6 282 47.2
FAN21G1007 Fragaria x ananassa HOM05D000451 ORTHO05D000351 1.3e-45 187.6 295 50.8
Medtr4g091520 Medicago truncatula HOM05D000451 ORTHO05D000351 1.3e-45 187.6 284 49.6
arahy.Tifrunner.gnm1.ann1.SL1AZZ Arachis hypogaea HOM05D000451 ORTHO05D000351 2.4e-44 183.3 274 43.4
FvH4_3g03760 Fragaria vesca HOM05D000451 ORTHO05D000351 2.4e-44 183.3 308 45.5
Lj1C1214T10 Lonicera japonica HOM05D000451 ORTHO05D000351 2.4e-44 183.3 245 46.5
BcaC09g51224 Brassica carinata HOM05D000451 ORTHO05D000351 4.0e-44 182.6 262 48.5
C01p15330 Brassica napus HOM05D000451 ORTHO05D000351 4.0e-44 182.6 267 48.3
BolC1t01487H Brassica oleracea HOM05D000451 ORTHO05D000351 4.0e-44 182.6 267 48.3
FAN25G3187 Fragaria x ananassa HOM05D000451 ORTHO05D000351 4.0e-44 182.6 298 50.3
arahy.Tifrunner.gnm1.ann1.HA6SXM Arachis hypogaea HOM05D000451 ORTHO05D000351 1.2e-43 181.0 274 41.6
Eucgr.D00753 Eucalyptus grandis HOM05D000451 ORTHO05D000351 2.0e-43 180.3 270 39.3
PSO675G6504 Papaver somniferum HOM05D000451 ORTHO05D000351 1.3e-42 177.6 264 38.6
SGA_v2.0_scaffold159G37696 Striga asiatica HOM05D005847 ORTHO05D007143 8.4e-42 174.9 283 41.7
TPR.G15382 Trifolium pratense HOM05D000451 ORTHO05D014276 1.9e-41 173.7 271 48.3
Psat7g107840 Pisum sativum HOM05D000451 ORTHO05D000351 3.5e-40 169.5 291 44.0
ECA236G3876 Erigeron canadensis HOM05D000451 ORTHO05D000351 3.3e-38 162.9 270 39.6
Lsat_1_v5_gn_7_20480 Lactuca sativa HOM05D000451 ORTHO05D000351 1.8e-36 157.1 308 35.7
HanXRQChr15g0482571 Helianthus annuus HOM05D000451 ORTHO05D000351 5.9e-35 152.1 284 36.3
DCAR_024927 Daucus carota HOM05D000451 ORTHO05D000351 7.6e-35 151.8 261 39.5
MBI18_g26026_MAGBIO Magnolia biondii HOM05D000451 ORTHO05D000351 1.0e-34 151.4 267 36.0
Hund21288 Selenicereus undatus HOM05D000451 ORTHO05D000351 2.2e-34 150.2 264 39.4
HanXRQChr05g0131101 Helianthus annuus HOM05D000451 ORTHO05D000351 3.8e-34 149.4 284 37.7
DCAR_004152 Daucus carota HOM05D000451 ORTHO05D000351 5.0e-34 149.1 268 39.6
VMungo0540G0946 Vigna mungo HOM05D000451 ORTHO05D000351 1.1e-33 147.9 258 47.7
CAN.G424.31 Capsicum annuum HOM05D000451 ORTHO05D000351 2.5e-33 146.7 229 41.5
Ca_18473_v3 Cicer arietinum L. HOM05D000451 ORTHO05D000351 4.2e-33 146.0 270 37.8
Lalb_Chr20g0122371 Lupinus albus HOM05D000451 ORTHO05D000351 4.2e-33 146.0 288 43.8
CSS0041812 Camellia sinensis var. sinensis HOM05D000451 ORTHO05D000351 1.6e-32 144.1 201 45.8
CDE05G0587 Ceratophyllum demersum HOM05D000451 ORTHO05D000602 4.6e-32 142.5 268 35.1
Phvul.006G193200 Phaseolus vulgaris HOM05D000451 ORTHO05D000351 1.8e-31 140.6 258 45.3
EL10Ac8g20551 Beta vulgaris HOM05D000451 ORTHO05D000351 1.1e-30 137.9 261 38.7
DCAR_028148 Daucus carota HOM05D000451 ORTHO05D000351 1.9e-30 137.1 263 36.1
TPR.G36777 Trifolium pratense HOM05D000451 ORTHO05D000351 1.3e-29 134.4 259 42.5
Ah.14g088800 Amaranthus hybridus HOM05D000451 ORTHO05D000351 2.8e-29 133.3 262 35.9
SHI02150 Sapria himalayana HOM05D000451 ORTHO05D000351 6.3e-29 132.1 259 36.3
Ah.09g236400 Amaranthus hybridus HOM05D000451 ORTHO05D000351 2.4e-28 130.2 276 37.0
Atru.chr10.2027 Acer truncatum HOM05D000451 ORTHO05D014276 4.1e-28 129.4 136 58.8
Nitab4.5_0008924g0030 Nicotiana tabacum HOM05D000451 ORTHO05D000351 4.1e-28 129.4 180 45.0
Psat1g209240 Pisum sativum HOM05D000451 ORTHO05D000351 9.1e-28 128.3 263 34.2
Medtr2g011630 Medicago truncatula HOM05D000451 ORTHO05D000351 2.0e-27 127.1 265 34.7
Lj6g0021099 Lotus japonicus HOM05D000451 ORTHO05D000351 1.0e-26 124.8 269 35.7
Sc17g0006740 Simmondsia chinensis HOM05D000451 ORTHO05D000351 3.8e-26 122.9 264 33.7
Glyma.13G247400 Glycine max HOM05D000451 ORTHO05D000351 2.5e-25 120.2 264 40.5
Glyma.15G066600 Glycine max HOM05D000451 ORTHO05D000351 4.2e-25 119.4 265 39.6
Lalb_Chr18g0059971 Lupinus albus HOM05D000451 ORTHO05D000351 9.4e-25 118.2 268 40.3
COL.COLO4_31627 Corchorus olitorius HOM05D000451 ORTHO05D000351 6.7e-23 112.1 126 54.8
Manes.07G075137 Manihot esculenta HOM05D000451 ORTHO05D000351 9.1e-20 101.7 285 32.6
Ca_00230_v3 Cicer arietinum L. HOM05D000451 ORTHO05D000351 1.2e-19 101.3 257 30.7
Lsat_1_v5_gn_4_58620 Lactuca sativa HOM05D000451 ORTHO05D000351 7.7e-19 98.6 262 32.1
PSO541G3320 Papaver somniferum HOM05D000451 ORTHO05D000351 1.7e-18 97.4 108 46.3
AUR62014694 Chenopodium quinoa HOM05D000451 ORTHO05D000351 2.2e-18 97.1 183 36.6
C06p34850 Brassica napus HOM05D009099 ORTHO05D014276 2.9e-18 96.7 73 54.8
C03p49580 Brassica napus HOM05D009099 ORTHO05D014276 3.8e-18 96.3 73 54.8
C04p64520 Brassica napus HOM05D009099 ORTHO05D014276 3.8e-18 96.3 73 54.8
BolC4t27933H Brassica oleracea HOM05D009099 ORTHO05D014276 3.8e-18 96.3 73 54.8
BolC3t17256H Brassica oleracea HOM05D009099 ORTHO05D014276 1.1e-17 94.7 73 54.8
C07p60370 Brassica napus HOM05D000451 ORTHO05D014276 3.2e-17 93.2 73 52.1
C09p05310 Brassica napus HOM05D009099 ORTHO05D014276 9.4e-17 91.7 73 53.4
BcaC04g23728 Brassica carinata HOM05D009099 ORTHO05D014276 1.2e-16 91.3 75 52.0
Os07g0557500 Oryza sativa ssp. japonica HOM05D000451 ORTHO05D000351 2.1e-16 90.5 258 28.7
Zm00001eb106740 Zea mays HOM05D000451 ORTHO05D037863 4.7e-16 89.4 256 27.3
HanXRQChr16g0517201 Helianthus annuus HOM05D000451 ORTHO05D000351 1.5e-14 84.3 273 29.7
Zm00001eb323940 Zea mays HOM05D000451 ORTHO05D037863 1.7e-13 80.9 257 26.1
AUR62012498 Chenopodium quinoa HOM05D000451 ORTHO05D000351 2.8e-13 80.1 250 32.0
ATR0693G213 Amborella trichopoda HOM05D000451 ORTHO05D014797 3.5e-11 73.2 256 26.6
BcaC02g07692 Brassica carinata HOM05D009099 ORTHO05D014276 7.2e-09 65.5 55 54.5
ECA234G2810 Erigeron canadensis HOM05D000451 ORTHO05D000351 2.7e-08 63.5 263 22.1
Atru.chr10.2026 Acer truncatum HOM05D000451 ORTHO05D000351 3.0e-07 60.1 50 50.0
BcaNung02799 Brassica carinata HOM05D000451 ORTHO05D000351 6.7e-07 58.9 48 47.9
SEGI_01523 Sequoiadendron giganteum HOM05D000451 ORTHO05D000351 2.6e-06 57.0 44 52.3
Aqoxy7G03357 Aquilegia oxysepala HOM05D000451 ORTHO05D000351 4.4e-06 56.2 64 37.5
COL.COLO4_10492 Corchorus olitorius HOM05D000451 ORTHO05D000351 5.7e-06 55.8 61 44.3
DCAR_004126 Daucus carota HOM05D000451 ORTHO05D000351 5.7e-06 55.8 54 44.4
Duzib177G0338 Durio zibethinus HOM05D000451 ORTHO05D000351 5.7e-06 55.8 53 47.2
Gohir.D08G226400 Gossypium hirsutum HOM05D000451 ORTHO05D000351 5.7e-06 55.8 53 47.2
Gorai.004G240400 Gossypium raimondii HOM05D000451 ORTHO05D000351 5.7e-06 55.8 53 47.2
Thecc.05G311000 Theobroma cacao HOM05D000451 ORTHO05D000351 5.7e-06 55.8 53 47.2
SalBow7G2359 Salvia bowleyana HOM05D000451 ORTHO05D000351 7.5e-06 55.5 65 41.5
TWI36G1320 Tripterygium wilfordii HOM05D000451 ORTHO05D000351 7.5e-06 55.5 65 41.5
Cc00_g11530 Coffea canephora HOM05D000451 ORTHO05D000351 9.7e-06 55.1 53 45.3
HPP92_002139 Vanilla planifolia HOM05D000451 ORTHO05D000351 9.7e-06 55.1 67 35.8


User provided reference genes

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