Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc27.117 Carica papaya HOM05D004656 ORTHO05D005404 0.0e+00 1502.3 758 100.0
QL05p081970 Quercus lobata HOM05D004656 ORTHO05D005404 0.0e+00 1198.0 773 79.0
QL03p053091 Quercus lobata HOM05D004656 ORTHO05D005404 0.0e+00 1197.6 773 78.9
Thecc.06G198700 Theobroma cacao HOM05D004656 ORTHO05D005404 0.0e+00 1153.7 773 75.2
Atru.chr10.2003 Acer truncatum HOM05D004656 ORTHO05D005404 0.0e+00 1151.3 773 75.2
GSVIVG01003206001 Vitis vinifera HOM05D004656 ORTHO05D005404 0.0e+00 1150.6 772 75.0
COL.COLO4_31575 Corchorus olitorius HOM05D004656 ORTHO05D005404 0.0e+00 1149.0 771 74.8
TWI38G2153 Tripterygium wilfordii HOM05D004656 ORTHO05D005404 0.0e+00 1147.1 773 74.5
CiPaw.09G158300 Carya illinoinensis HOM05D004656 ORTHO05D005404 0.0e+00 1144.8 773 75.0
MD10G1303000 Malus domestica HOM05D004656 ORTHO05D005404 0.0e+00 1144.8 774 75.5
Potri.004G034900 Populus trichocarpa HOM05D004656 ORTHO05D005404 0.0e+00 1144.4 770 74.5
Dinv39815 Davidia involucrata HOM05D004656 ORTHO05D005404 0.0e+00 1143.6 773 75.2
Duzib160G0757 Durio zibethinus HOM05D004656 ORTHO05D005404 0.0e+00 1139.4 791 73.3
Lj4g0008048 Lotus japonicus HOM05D004656 ORTHO05D005404 0.0e+00 1133.2 773 73.2
Prupe.4G036500 Prunus persica HOM05D004656 ORTHO05D005404 0.0e+00 1132.9 774 75.2
Gorai.011G022700 Gossypium raimondii HOM05D004656 ORTHO05D005404 0.0e+00 1131.3 771 73.9
Gohir.A10G020800 Gossypium hirsutum HOM05D004656 ORTHO05D005404 0.0e+00 1128.6 771 74.3
CANSAT56G3558 Cannabis sativa HOM05D004656 ORTHO05D005404 0.0e+00 1127.9 773 73.7
RcHm_v2.0_Chr5g0006531 Rosa chinensis HOM05D004656 ORTHO05D005404 0.0e+00 1126.7 775 75.1
Gohir.D10G021600 Gossypium hirsutum HOM05D004656 ORTHO05D005404 0.0e+00 1124.4 781 73.2
Lalb_Chr05g0218181 Lupinus albus HOM05D004656 ORTHO05D005404 0.0e+00 1121.3 776 72.7
arahy.Tifrunner.gnm1.ann1.N579TE Arachis hypogaea HOM05D004656 ORTHO05D005404 0.0e+00 1120.5 774 72.1
Ciclev10014364m.g Citrus clementina HOM05D004656 ORTHO05D005404 0.0e+00 1117.1 766 74.3
Glyma.07G190600 Glycine max HOM05D004656 ORTHO05D005404 0.0e+00 1114.0 776 71.8
Medtr4g090990 Medicago truncatula HOM05D004656 ORTHO05D005404 0.0e+00 1111.7 774 71.2
FvH4_3g04050 Fragaria vesca HOM05D004656 ORTHO05D005404 0.0e+00 1107.8 774 73.0
arahy.Tifrunner.gnm1.ann1.9GFP5H Arachis hypogaea HOM05D004656 ORTHO05D005404 0.0e+00 1105.5 799 70.0
TPR.G32417 Trifolium pratense HOM05D004656 ORTHO05D005404 0.0e+00 1105.1 785 70.3
Sed0019970 Sechium edule HOM05D004656 ORTHO05D005404 0.0e+00 1104.4 773 72.2
FAN11G0019 Fragaria x ananassa HOM05D004656 ORTHO05D005404 0.0e+00 1102.0 778 72.6
Psat7g109640 Pisum sativum HOM05D004656 ORTHO05D005404 0.0e+00 1095.9 771 71.7
AT4G21530 Arabidopsis thaliana HOM05D004656 ORTHO05D005404 0.0e+00 1092.8 771 71.1
Thhalv10024471m.g Eutrema salsugineum HOM05D004656 ORTHO05D005404 0.0e+00 1090.9 769 71.0
BraA01t01228Z Brassica rapa HOM05D004656 ORTHO05D005404 0.0e+00 1089.7 776 70.5
THA.LOC104812734 Tarenaya hassleriana HOM05D004656 ORTHO05D005404 0.0e+00 1089.3 771 70.4
Carub.0007s1989 Capsella rubella HOM05D004656 ORTHO05D005404 0.0e+00 1087.4 771 70.6
AL7G32500 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 0.0e+00 1085.5 771 70.8
A01p12840 Brassica napus HOM05D004656 ORTHO05D005404 0.0e+00 1083.6 771 70.6
Cfa000358 Carpinus fangiana HOM05D004656 ORTHO05D005404 0.0e+00 1082.0 773 71.4
CARHR228190 Cardamine hirsuta HOM05D004656 ORTHO05D005404 0.0e+00 1081.2 771 70.3
Sabra04G0020600 Salix brachista HOM05D004656 ORTHO05D005404 0.0e+00 1081.2 746 72.9
BolC1t01500H Brassica oleracea HOM05D004656 ORTHO05D005404 0.0e+00 1077.4 771 70.3
Aa31LG6G3550 Aethionema arabicum HOM05D004656 ORTHO05D005404 0.0e+00 1076.6 778 69.5
C01p15460 Brassica napus HOM05D004656 ORTHO05D005404 0.0e+00 1075.8 780 69.5
FAN16G1451 Fragaria x ananassa HOM05D004656 ORTHO05D005404 0.0e+00 1075.5 770 72.3
Solyc02g079050.3 Solanum lycopersicum HOM05D004656 ORTHO05D005404 1.3e-310 1069.3 768 70.3
Sopen02g023860 Solanum pennellii HOM05D004656 ORTHO05D005404 5.1e-310 1067.4 768 70.3
Phvul.002G222500 Phaseolus vulgaris HOM05D004656 ORTHO05D005404 1.5e-309 1065.8 774 69.1
vmacro03819 Vaccinium macrocarpon HOM05D004656 ORTHO05D005404 5.7e-309 1063.9 864 64.6
PSO063G3544 Papaver somniferum HOM05D004656 ORTHO05D005404 3.1e-307 1058.1 779 68.9
CSS0039613 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 6.9e-307 1057.0 770 70.5
Aqoxy7G03085 Aquilegia oxysepala HOM05D004656 ORTHO05D005404 1.0e-305 1053.1 777 69.0
DCAR_004136 Daucus carota HOM05D004656 ORTHO05D005404 1.7e-305 1052.4 774 69.0
FAN25G3623 Fragaria x ananassa HOM05D004656 ORTHO05D005404 5.0e-305 1050.8 878 64.2
CAN.G1181.24 Capsicum annuum HOM05D004656 ORTHO05D005404 1.1e-304 1049.7 767 69.4
VMungo0251G3002 Vigna mungo HOM05D004656 ORTHO05D005404 1.9e-304 1048.9 774 68.9
BcaNung02789 Brassica carinata HOM05D004656 ORTHO05D005404 2.5e-304 1048.5 797 67.6
Nn2g12691 Nelumbo nucifera HOM05D004656 ORTHO05D005404 4.2e-304 1047.7 775 68.9
Sp7g19640 Schrenkiella parvula HOM05D004656 ORTHO05D005404 4.2e-304 1047.7 771 68.6
Cc02_g12490 Coffea canephora HOM05D004656 ORTHO05D005404 3.9e-302 1041.2 766 69.1
MELO3C025319.2 Cucumis melo HOM05D004656 ORTHO05D005404 2.0e-301 1038.9 773 69.2
CsaV3_1G030810 Cucumis sativus L. HOM05D004656 ORTHO05D005404 9.7e-301 1036.6 773 69.3
Nitab4.5_0003574g0090 Nicotiana tabacum HOM05D004656 ORTHO05D005404 2.2e-300 1035.4 770 68.4
Migut.E00415 Erythranthe guttata HOM05D004656 ORTHO05D005404 1.5e-298 1029.2 774 67.2
HanXRQChr17g0551051 Helianthus annuus HOM05D004656 ORTHO05D005404 2.0e-298 1028.9 767 68.1
ClCG01G022700 Citrullus lanatus HOM05D004656 ORTHO05D005404 2.9e-297 1025.0 773 68.4
Nitab4.5_0000190g0180 Nicotiana tabacum HOM05D004656 ORTHO05D005404 5.0e-297 1024.2 828 64.3
Peaxi162Scf00588g01013 Petunia axillaris HOM05D004656 ORTHO05D005404 2.1e-295 1018.8 769 67.8
PSO782G2217 Papaver somniferum HOM05D004656 ORTHO05D005404 3.6e-295 1018.1 779 67.3
SalBow7G0885 Salvia bowleyana HOM05D004656 ORTHO05D005404 3.3e-293 1011.5 774 65.8
SalBow7G0840 Salvia bowleyana HOM05D004656 ORTHO05D005404 9.7e-293 1010.0 774 65.6
Sc17g0006590 Simmondsia chinensis HOM05D004656 ORTHO05D005404 1.4e-291 1006.1 773 65.7
Manes.15G100000 Manihot esculenta HOM05D004656 ORTHO05D005404 4.1e-291 1004.6 735 69.9
ECA234G0402 Erigeron canadensis HOM05D004656 ORTHO05D005404 5.0e-289 997.7 770 66.5
Lsat_1_v5_gn_4_57080 Lactuca sativa HOM05D004656 ORTHO05D005404 1.2e-287 993.0 769 66.4
AUR62016904 Chenopodium quinoa HOM05D004656 ORTHO05D005404 6.1e-287 990.7 774 65.0
PGR042G3654 Punica granatum HOM05D004656 ORTHO05D005404 5.2e-286 987.6 772 66.7
MBI16_g41806_MAGBIO Magnolia biondii HOM05D004656 ORTHO05D005404 6.7e-286 987.3 871 60.2
Oeu053939.3 Olea europaea HOM05D004656 ORTHO05D005404 2.4e-283 978.8 768 65.2
Haze_06568 Corylus avellana HOM05D004656 ORTHO05D005404 1.0e-281 973.4 717 70.4
AUR62014723 Chenopodium quinoa HOM05D004656 ORTHO05D005404 3.8e-273 944.9 745 63.9
SGA_v2.0_scaffold92G28242 Striga asiatica HOM05D004656 ORTHO05D005404 1.5e-272 943.0 781 62.2
Lj2A281G21 Lonicera japonica HOM05D004656 ORTHO05D005404 1.9e-264 916.0 774 63.2
ATR0580G317 Amborella trichopoda HOM05D004656 ORTHO05D005404 1.0e-257 893.6 778 59.6
HPP92_015366 Vanilla planifolia HOM05D004656 ORTHO05D005404 6.1e-255 884.4 782 58.3
EL10Ac8g20612 Beta vulgaris HOM05D004656 ORTHO05D005404 2.0e-253 879.4 772 60.5
Ca_18486_v3 Cicer arietinum L. HOM05D004656 ORTHO05D005404 9.3e-219 764.2 523 72.5
BcaNung02790 Brassica carinata HOM05D004656 ORTHO05D005404 5.6e-216 755.0 497 75.5
GSVIVG01003202001 Vitis vinifera HOM05D004656 ORTHO05D005404 2.6e-213 746.1 537 72.3
Zm00001eb192820 Zea mays HOM05D004656 ORTHO05D005404 4.9e-212 741.9 755 51.3
AL7G32520 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 1.2e-194 684.1 591 61.4
TAR626G0166 Trochodendron aralioides HOM05D004656 ORTHO05D005404 2.2e-183 646.7 479 70.1
CDE02G2476 Ceratophyllum demersum HOM05D004656 ORTHO05D005404 4.5e-181 639.0 762 48.8
Eucgr.E03497 Eucalyptus grandis HOM05D004656 ORTHO05D005404 5.0e-180 635.6 435 72.0
Pp3c19_17530 Physcomitrium patens HOM05D004656 ORTHO05D005404 6.3e-159 565.5 797 41.3
Mapoly0038s0098 Marchantia polymorpha HOM05D004656 ORTHO05D005404 8.3e-151 538.5 785 39.9
Eucgr.D02667 Eucalyptus grandis HOM05D004656 ORTHO05D005404 2.7e-149 533.5 403 68.2
unitig_8.g3352 Utricularia gibba HOM05D004656 ORTHO05D005404 3.3e-147 526.6 509 56.0
Hma1.2p1_1241F.1_g269840 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 3.5e-133 479.9 503 55.1
AagrBONN_evm.TU.Sc2ySwM_117.1500 Anthoceros agrestis HOM05D004656 ORTHO05D005404 6.4e-111 406.0 745 34.8
BcaC09g51334 Brassica carinata HOM05D004656 ORTHO05D005404 2.1e-106 391.0 442 52.5
CBR_g50890 Chara braunii HOM05D004656 ORTHO05D000048 9.9e-104 382.1 824 31.2
BcaC09g51339 Brassica carinata HOM05D004656 ORTHO05D005404 1.3e-103 381.7 438 51.1
Hund23621 Selenicereus undatus HOM05D004656 ORTHO05D005404 1.9e-102 377.9 378 52.9
Eucgr.E03552 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.3e-90 338.6 256 68.0
BcaC09g51337 Brassica carinata HOM05D004656 ORTHO05D005404 1.2e-88 332.0 370 51.9
arahy.Tifrunner.gnm1.ann1.QWV34J Arachis hypogaea HOM05D004656 ORTHO05D005404 6.0e-85 319.7 262 63.4
Ca_18485_v3 Cicer arietinum L. HOM05D004656 ORTHO05D005404 5.7e-83 313.2 190 76.3
Eucgr.C00026 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.1e-81 308.9 196 79.1
SEGI_33901 Sequoiadendron giganteum HOM05D004656 ORTHO05D005404 1.4e-70 271.9 398 38.2
unitig_8.g3351 Utricularia gibba HOM05D004656 ORTHO05D005404 7.4e-67 259.6 227 57.3
SMO119G0264 Selaginella moellendorffii HOM05D004656 ORTHO05D005404 7.0e-57 226.5 748 26.5
QL02p031126 Quercus lobata HOM05D004656 ORTHO05D005404 9.1e-49 199.5 174 68.4
RcHm_v2.0_Chr5g0006431 Rosa chinensis HOM05D004656 ORTHO05D005404 2.2e-42 178.3 323 39.3
SHI02118 Sapria himalayana HOM05D004656 ORTHO05D005404 7.0e-41 173.3 224 45.5
PRCOL_00000091 Prasinoderma coloniale HOM05D004656 ORTHO05D005404 2.3e-36 158.3 450 26.2
Os02g0785900 Oryza sativa ssp. japonica HOM05D004656 ORTHO05D005404 4.4e-35 154.1 110 64.5
SEGI_08767 Sequoiadendron giganteum HOM05D004656 ORTHO05D005404 5.7e-35 153.7 163 52.1
SHI02121 Sapria himalayana HOM05D004656 ORTHO05D005404 5.9e-32 143.7 255 35.7
Hund23620 Selenicereus undatus HOM05D004656 ORTHO05D005404 4.3e-30 137.5 86 75.6
Cre12.g556650 Chlamydomonas reinhardtii HOM05D004656 ORTHO05D005404 6.1e-29 133.7 505 23.8
Eucgr.C00045 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.0e-28 132.9 79 82.3
TAR369G0180 Trochodendron aralioides HOM05D004656 ORTHO05D005404 6.8e-28 130.2 69 85.5
MCO05G135 Micromonas commoda HOM05D004656 ORTHO05D005404 1.2e-27 129.4 490 24.7
CSS0025603 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 3.4e-27 127.9 77 77.9
CSS0005991 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 9.8e-27 126.3 130 52.3
CSS0042439 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.3e-26 125.9 77 77.9
EL10Ac6g14063 Beta vulgaris HOM05D004656 ORTHO05D005404 4.9e-26 124.0 90 70.0
EL10Ac9g22460 Beta vulgaris HOM05D004656 ORTHO05D005404 7.0e-25 120.2 88 69.3
Hma1.2p1_0144F.1_g064710 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 1.6e-24 119.0 61 90.2
Zm00001eb125490 Zea mays HOM05D004656 ORTHO05D005404 5.9e-24 117.1 109 53.2
CSS0038861 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.0e-23 116.3 77 72.7
SGA_v2.0_scaffold159G37668 Striga asiatica HOM05D004656 ORTHO05D005404 2.3e-23 115.2 153 44.4
Eucgr.E01958 Eucalyptus grandis HOM05D004656 ORTHO05D005404 3.0e-23 114.8 90 63.3
Zm00001eb384090 Zea mays HOM05D004656 ORTHO05D005404 8.6e-23 113.2 109 52.3
Zm00001eb374130 Zea mays HOM05D004656 ORTHO05D005404 1.1e-22 112.8 61 82.0
CSS0002071 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 2.5e-22 111.7 65 81.5
Haze_06207 Corylus avellana HOM05D004656 ORTHO05D005404 2.5e-22 111.7 61 85.2
MELO3C008912.2 Cucumis melo HOM05D004656 ORTHO05D005404 2.9e-18 98.2 55 83.6
Hma1.2p1_1241F.1_g269830 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 3.7e-18 97.8 61 77.0
MELO3C032683.2 Cucumis melo HOM05D004656 ORTHO05D005404 3.2e-17 94.7 62 69.4
SHI02114 Sapria himalayana HOM05D004656 ORTHO05D005404 6.0e-16 90.5 78 53.8
EL10Ac3g05965 Beta vulgaris HOM05D004656 ORTHO05D005404 1.3e-15 89.4 57 77.2
CSS0033314 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 2.3e-15 88.6 55 78.2
CSS0037848 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 2.3e-15 88.6 55 78.2
Eucgr.C00011 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.2e-11 76.3 55 63.6
Eucgr.E03560 Eucalyptus grandis HOM05D004656 ORTHO05D005404 4.4e-11 74.3 55 61.8
Eucgr.E03557 Eucalyptus grandis HOM05D004656 ORTHO05D005404 7.5e-11 73.6 61 57.4
CSS0023832 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.7e-10 72.4 77 53.2
SHI02119 Sapria himalayana HOM05D004656 ORTHO05D005404 1.1e-09 69.7 46 73.9
Eucgr.L00388 Eucalyptus grandis HOM05D004656 ORTHO05D005404 3.2e-09 68.2 60 58.3
Zm00001eb266270 Zea mays HOM05D004656 ORTHO05D005404 4.1e-09 67.8 80 43.8
Eucgr.D02662 Eucalyptus grandis HOM05D004656 ORTHO05D005404 4.6e-08 64.3 82 50.0
Actinidia29288 Actinidia chinensis HOM05D004656 ORTHO05D005404 1.3e-07 62.8 31 90.3
SHI02115 Sapria himalayana HOM05D004656 ORTHO05D005404 7.3e-06 57.0 32 75.0


User provided reference genes

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