Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc27.107 Carica papaya HOM05D001548 ORTHO05D003922 3.2e-33 144.4 70 100.0
Ca_00271_v3 Cicer arietinum L. HOM05D001548 ORTHO05D003922 7.2e-25 116.7 62 90.3
Lalb_Chr15g0090061 Lupinus albus HOM05D001548 ORTHO05D003922 9.4e-25 116.3 62 88.7
Atru.chr10.1984 Acer truncatum HOM05D001548 ORTHO05D003922 1.2e-24 115.9 62 88.7
Atru.chr10.1985 Acer truncatum HOM05D001548 ORTHO05D003922 1.2e-24 115.9 62 88.7
Ah.09g235980 Amaranthus hybridus HOM05D003383 ORTHO05D003890 2.1e-24 115.2 62 87.1
arahy.Tifrunner.gnm1.ann1.K5KWWW Arachis hypogaea HOM05D001548 ORTHO05D003922 2.7e-24 114.8 62 88.7
COL.COLO4_31558 Corchorus olitorius HOM05D001548 ORTHO05D003922 2.7e-24 114.8 62 91.9
Thecc.06G196700 Theobroma cacao HOM05D001548 ORTHO05D003922 3.6e-24 114.4 62 87.1
Gohir.A05G164350 Gossypium hirsutum HOM05D001548 ORTHO05D003922 7.9e-24 113.2 62 88.7
Gohir.D05G167300 Gossypium hirsutum HOM05D001548 ORTHO05D003922 7.9e-24 113.2 62 88.7
Gorai.009G172400 Gossypium raimondii HOM05D001548 ORTHO05D003922 7.9e-24 113.2 62 88.7
Psat1g207880 Pisum sativum HOM05D001548 ORTHO05D003922 1.0e-23 112.8 62 85.5
AUR62014739 Chenopodium quinoa HOM05D001548 ORTHO05D003922 1.4e-23 112.5 62 83.9
AUR62016918 Chenopodium quinoa HOM05D001548 ORTHO05D003922 1.4e-23 112.5 62 83.9
Duzib235G0785 Durio zibethinus HOM05D001548 ORTHO05D003922 2.3e-23 111.7 62 88.7
Lalb_Chr20g0122221 Lupinus albus HOM05D001548 ORTHO05D003922 2.3e-23 111.7 62 87.1
arahy.Tifrunner.gnm1.ann1.B92LJH Arachis hypogaea HOM05D001548 ORTHO05D003922 3.0e-23 111.3 62 85.5
Potri.004G036100 Populus trichocarpa HOM05D001548 ORTHO05D003922 5.1e-23 110.5 62 82.3
Sabra04G0022000 Salix brachista HOM05D001548 ORTHO05D003922 6.7e-23 110.2 62 80.6
Hund23633 Selenicereus undatus HOM05D001548 ORTHO05D003922 6.7e-23 110.2 62 82.3
Medtr2g012420 Medicago truncatula HOM05D001548 ORTHO05D003922 2.0e-22 108.6 62 83.9
THA.LOC104812957 Tarenaya hassleriana HOM05D001548 ORTHO05D003922 2.0e-22 108.6 62 83.9
Lj1A1211G82 Lonicera japonica HOM05D001548 ORTHO05D003922 2.6e-22 108.2 62 80.6
CiPaw.10G119700 Carya illinoinensis HOM05D001548 ORTHO05D003922 3.3e-22 107.8 62 82.3
HanXRQChr17g0555731 Helianthus annuus HOM05D001548 ORTHO05D003922 3.3e-22 107.8 62 82.3
TWI63G1036 Tripterygium wilfordii HOM05D001548 ORTHO05D003922 4.4e-22 107.5 62 82.3
TAR626G1284 Trochodendron aralioides HOM05D001548 ORTHO05D003922 4.4e-22 107.5 62 80.6
Aa31LG6G3590 Aethionema arabicum HOM05D001548 ORTHO05D003922 5.7e-22 107.1 62 82.3
BcaNung02778 Brassica carinata HOM05D001548 ORTHO05D003922 5.7e-22 107.1 62 83.9
Ciclev10015925m.g Citrus clementina HOM05D001548 ORTHO05D003922 5.7e-22 107.1 62 83.9
Sabra11G0030900 Salix brachista HOM05D001548 ORTHO05D003922 7.4e-22 106.7 62 79.0
EL10Ac8g20626 Beta vulgaris HOM05D001548 ORTHO05D003922 9.7e-22 106.3 62 80.6
CAN.G1181.11 Capsicum annuum HOM05D001548 ORTHO05D003922 9.7e-22 106.3 62 80.6
A01p12900 Brassica napus HOM05D001548 ORTHO05D003922 1.3e-21 105.9 62 82.3
C01p15540 Brassica napus HOM05D001548 ORTHO05D003922 1.3e-21 105.9 62 82.3
BolC1t01506H Brassica oleracea HOM05D001548 ORTHO05D003922 1.3e-21 105.9 62 82.3
BraA01t01234Z Brassica rapa HOM05D001548 ORTHO05D003922 1.3e-21 105.9 62 82.3
Dinv39801 Davidia involucrata HOM05D001548 ORTHO05D003922 1.3e-21 105.9 62 79.0
Gohir.A10G019800 Gossypium hirsutum HOM05D001548 ORTHO05D003922 1.3e-21 105.9 62 80.6
Gohir.D10G020600 Gossypium hirsutum HOM05D001548 ORTHO05D003922 1.3e-21 105.9 62 80.6
Gorai.011G021700 Gossypium raimondii HOM05D001548 ORTHO05D003922 1.3e-21 105.9 62 80.6
Lsat_1_v5_gn_4_57401 Lactuca sativa HOM05D001548 ORTHO05D003922 1.3e-21 105.9 62 80.6
PSO541G1752 Papaver somniferum HOM05D001548 ORTHO05D003922 1.3e-21 105.9 62 77.4
PSO675G8570 Papaver somniferum HOM05D001548 ORTHO05D003922 1.3e-21 105.9 62 77.4
Rhsim13G0174500 Rhododendron simsii HOM05D001548 ORTHO05D003922 1.3e-21 105.9 62 82.3
Manes.16G022100 Manihot esculenta HOM05D001548 ORTHO05D003922 1.7e-21 105.5 62 80.6
TWI63G0457 Tripterygium wilfordii HOM05D001548 ORTHO05D003922 1.7e-21 105.5 62 82.3
Hma1.2p1_0144F.1_g064910 Hydrangea macrophylla HOM05D001548 ORTHO05D003922 2.2e-21 105.1 62 83.9
Nn1g06719 Nelumbo nucifera HOM05D001548 ORTHO05D003922 2.2e-21 105.1 62 77.4
Sc17g0006490 Simmondsia chinensis HOM05D001548 ORTHO05D003922 2.2e-21 105.1 62 80.6
Lj6g0026396 Lotus japonicus HOM05D001548 ORTHO05D003922 2.8e-21 104.8 62 80.6
Oeu053926.1 Olea europaea HOM05D001548 ORTHO05D003922 3.7e-21 104.4 62 80.6
Solyc02g078940.3 Solanum lycopersicum HOM05D001548 ORTHO05D003922 3.7e-21 104.4 62 75.8
Sopen02g023750 Solanum pennellii HOM05D001548 ORTHO05D003922 3.7e-21 104.4 62 75.8
TAR626G1601 Trochodendron aralioides HOM05D001548 ORTHO05D003922 3.7e-21 104.4 62 77.4
VMungo0540G2381 Vigna mungo HOM05D001548 ORTHO05D003922 3.7e-21 104.4 62 82.3
Nitab4.5_0001170g0200 Nicotiana tabacum HOM05D001548 ORTHO05D003922 4.8e-21 104.0 62 75.8
Prupe.4G038700 Prunus persica HOM05D001548 ORTHO05D003922 4.8e-21 104.0 62 80.6
Sp7g19720 Schrenkiella parvula HOM05D001548 ORTHO05D003922 4.8e-21 104.0 62 82.3
Thhalv10025712m.g Eutrema salsugineum HOM05D001548 ORTHO05D003922 6.3e-21 103.6 62 80.6
Manes.16G022000 Manihot esculenta HOM05D001548 ORTHO05D003922 6.3e-21 103.6 62 77.4
PGSC0003DMG400022418 Solanum tuberosum HOM05D001548 ORTHO05D003922 6.3e-21 103.6 62 75.8
Phvul.006G190900 Phaseolus vulgaris HOM05D001548 ORTHO05D003922 8.2e-21 103.2 62 80.6
Prupe.7G059300 Prunus persica HOM05D001548 ORTHO05D003922 8.2e-21 103.2 62 80.6
Medtr2g012380 Medicago truncatula HOM05D001548 ORTHO05D003922 1.1e-20 102.8 62 82.3
Medtr4g050760 Medicago truncatula HOM05D001548 ORTHO05D003922 1.1e-20 102.8 62 82.3
Nitab4.5_0003676g0090 Nicotiana tabacum HOM05D001548 ORTHO05D003922 1.1e-20 102.8 62 74.2
CANSAT56G2247 Cannabis sativa HOM05D001548 ORTHO05D003922 1.4e-20 102.4 62 77.4
CARHR228260 Cardamine hirsuta HOM05D001548 ORTHO05D003922 1.4e-20 102.4 62 80.6
CiPaw.10G119300 Carya illinoinensis HOM05D001548 ORTHO05D003922 1.8e-20 102.1 62 77.4
ATR0693G362 Amborella trichopoda HOM05D001548 ORTHO05D003922 2.4e-20 101.7 62 79.0
Cc02_g12600 Coffea canephora HOM05D001548 ORTHO05D003922 2.4e-20 101.7 62 75.8
QL05p081676 Quercus lobata HOM05D001548 ORTHO05D003922 3.1e-20 101.3 62 79.0
Haze_06555 Corylus avellana HOM05D001548 ORTHO05D003922 4.1e-20 100.9 62 77.4
RcHm_v2.0_Chr5g0006721 Rosa chinensis HOM05D001548 ORTHO05D003922 4.1e-20 100.9 62 75.8
GSVIVG01005847001 Vitis vinifera HOM05D001548 ORTHO05D003922 4.1e-20 100.9 62 75.8
Glyma.15G068300 Glycine max HOM05D001548 ORTHO05D003922 5.3e-20 100.5 62 80.6
PGR004G2268 Punica granatum HOM05D001548 ORTHO05D003922 5.3e-20 100.5 62 79.0
Peaxi162Scf00527g00322 Petunia axillaris HOM05D001548 ORTHO05D003922 6.9e-20 100.1 62 71.0
QL05p081681 Quercus lobata HOM05D001548 ORTHO05D003922 6.9e-20 100.1 62 77.4
Actinidia01927 Actinidia chinensis HOM05D001548 ORTHO05D003922 9.1e-20 99.8 62 79.0
Cfa000368 Carpinus fangiana HOM05D001548 ORTHO05D003922 9.1e-20 99.8 62 77.4
Eucgr.L02843 Eucalyptus grandis HOM05D001548 ORTHO05D003922 9.1e-20 99.8 62 75.8
Hma1.2p1_0144F.1_g064920 Hydrangea macrophylla HOM05D001548 ORTHO05D003922 9.1e-20 99.8 62 77.4
Hma1.2p1_0144F.1_g064936 Hydrangea macrophylla HOM05D001548 ORTHO05D003922 9.1e-20 99.8 62 77.4
Thecc.06G196800 Theobroma cacao HOM05D001548 ORTHO05D003922 9.1e-20 99.8 62 75.8
ClCG01G022620 Citrullus lanatus HOM05D001548 ORTHO05D003922 1.2e-19 99.4 62 80.6
ECA234G0352 Erigeron canadensis HOM05D001548 ORTHO05D003922 1.2e-19 99.4 62 77.4
Oeu053927.1 Olea europaea HOM05D001548 ORTHO05D003922 1.5e-19 99.0 62 77.4
RcHm_v2.0_Chr1g0318171 Rosa chinensis HOM05D001548 ORTHO05D003922 1.5e-19 99.0 62 75.8
CSS0049882 Camellia sinensis var. sinensis HOM05D001548 ORTHO05D003922 2.0e-19 98.6 62 75.8
Ca_00270_v3 Cicer arietinum L. HOM05D001548 ORTHO05D003922 2.0e-19 98.6 62 80.6
MELO3C004714.2 Cucumis melo HOM05D001548 ORTHO05D003922 2.0e-19 98.6 62 77.4
Eucgr.D00699 Eucalyptus grandis HOM05D001548 ORTHO05D003922 2.0e-19 98.6 62 75.8
MD12G1074500 Malus domestica HOM05D001548 ORTHO05D003922 2.0e-19 98.6 62 77.4
FAN21G2301 Fragaria x ananassa HOM05D001548 ORTHO05D003922 3.4e-19 97.8 62 74.2
MSTRG.15920 Avicennia marina HOM05D001548 ORTHO05D003922 4.5e-19 97.4 62 75.8
FvH4_3g04320 Fragaria vesca HOM05D001548 ORTHO05D003922 4.5e-19 97.4 62 72.6
FAN11G0633 Fragaria x ananassa HOM05D001548 ORTHO05D003922 4.5e-19 97.4 62 72.6
COL.COLO4_31559 Corchorus olitorius HOM05D001548 ORTHO05D003922 5.9e-19 97.1 62 72.6
CsaV3_6G049820 Cucumis sativus L. HOM05D001548 ORTHO05D003922 5.9e-19 97.1 62 77.4
FvH4_3g04340 Fragaria vesca HOM05D001548 ORTHO05D003922 5.9e-19 97.1 62 72.6
FAN11G1894 Fragaria x ananassa HOM05D001548 ORTHO05D003922 5.9e-19 97.1 62 72.6
FAN25G1077 Fragaria x ananassa HOM05D001548 ORTHO05D003922 5.9e-19 97.1 62 72.6
MELO3C007314.2 Cucumis melo HOM05D001548 ORTHO05D003922 7.7e-19 96.7 62 75.8
SGA_v2.0_scaffold7G03963 Striga asiatica HOM05D001548 ORTHO05D003922 7.7e-19 96.7 62 74.2
Duzib160G0467 Durio zibethinus HOM05D001548 ORTHO05D003922 1.0e-18 96.3 62 72.6
Migut.M01197 Erythranthe guttata HOM05D001548 ORTHO05D003922 1.0e-18 96.3 62 72.6
Prupe.7G059000 Prunus persica HOM05D001548 ORTHO05D003922 1.0e-18 96.3 62 74.2
FAN21G4059 Fragaria x ananassa HOM05D001548 ORTHO05D003922 1.3e-18 95.9 62 71.0
Actinidia05591 Actinidia chinensis HOM05D001548 ORTHO05D003922 1.7e-18 95.5 62 77.4
AT4G21580 Arabidopsis thaliana HOM05D001548 ORTHO05D003922 1.7e-18 95.5 62 79.0
FAN25G3513 Fragaria x ananassa HOM05D001548 ORTHO05D003922 1.7e-18 95.5 62 71.0
MD05G1323900 Malus domestica HOM05D001548 ORTHO05D003922 1.7e-18 95.5 62 69.4
Rhsim13G0174400 Rhododendron simsii HOM05D001548 ORTHO05D003922 1.7e-18 95.5 55 83.6
AL7G32440 Arabidopsis lyrata HOM05D001548 ORTHO05D003922 2.2e-18 95.1 62 77.4
CDE11G1200 Ceratophyllum demersum HOM05D001548 ORTHO05D003922 2.2e-18 95.1 60 75.0
Cfa000369 Carpinus fangiana HOM05D001548 ORTHO05D003922 2.9e-18 94.7 62 72.6
Haze_06554 Corylus avellana HOM05D001548 ORTHO05D003922 2.9e-18 94.7 62 72.6
FAN16G3333 Fragaria x ananassa HOM05D001548 ORTHO05D003922 2.9e-18 94.7 62 72.6
CARHR228270 Cardamine hirsuta HOM05D001548 ORTHO05D003922 3.8e-18 94.4 62 74.2
unitig_748.g7573 Utricularia gibba HOM05D001548 ORTHO05D003922 3.8e-18 94.4 63 76.2
Carub.0007s1983 Capsella rubella HOM05D001548 ORTHO05D003922 5.0e-18 94.0 62 77.4
RcHm_v2.0_Chr5g0006701 Rosa chinensis HOM05D001548 ORTHO05D003922 6.5e-18 93.6 62 71.0
Aqoxy1G02697 Aquilegia oxysepala HOM05D001548 ORTHO05D003922 8.5e-18 93.2 62 69.4
Gohir.A05G164400 Gossypium hirsutum HOM05D001548 ORTHO05D003922 8.5e-18 93.2 62 69.4
Gohir.D05G167400 Gossypium hirsutum HOM05D001548 ORTHO05D003922 8.5e-18 93.2 62 69.4
SalBow8G3959 Salvia bowleyana HOM05D001548 ORTHO05D003922 8.5e-18 93.2 62 75.8
CsaV3_1G014810 Cucumis sativus L. HOM05D001548 ORTHO05D003922 1.1e-17 92.8 62 74.2
Sed0019244 Sechium edule HOM05D001548 ORTHO05D003922 2.5e-17 91.7 62 72.6
DCAR_008065 Daucus carota HOM05D001548 ORTHO05D003922 3.2e-17 91.3 62 67.7
Gorai.009G172500 Gossypium raimondii HOM05D001548 ORTHO05D003922 3.2e-17 91.3 62 67.7
HPP92_013220 Vanilla planifolia HOM05D001548 ORTHO05D003922 4.2e-17 90.9 62 69.4
vmacro22278 Vaccinium macrocarpon HOM05D001548 ORTHO05D003922 7.2e-17 90.1 54 81.5
Mapoly0005s0036 Marchantia polymorpha HOM05D001548 ORTHO05D003922 9.4e-17 89.7 62 67.7
AagrBONN_evm.TU.Sc2ySwM_228.729 Anthoceros agrestis HOM05D001548 ORTHO05D003922 1.2e-16 89.4 62 66.1
Aqoxy1G00822 Aquilegia oxysepala HOM05D001548 ORTHO05D003922 1.6e-16 89.0 62 67.7
arahy.Tifrunner.gnm1.ann1.F566GJ Arachis hypogaea HOM05D001548 ORTHO05D003922 3.6e-16 87.8 62 69.4
Eucgr.A02651 Eucalyptus grandis HOM05D001548 ORTHO05D003922 3.6e-16 87.8 62 67.7
Eucgr.A02652 Eucalyptus grandis HOM05D001548 ORTHO05D003922 4.7e-16 87.4 62 67.7
CiPaw.09G159300 Carya illinoinensis HOM05D001548 ORTHO05D003922 6.1e-16 87.0 63 69.8
HPP92_013258 Vanilla planifolia HOM05D001548 ORTHO05D003922 6.1e-16 87.0 62 66.1
CDE05G0002 Ceratophyllum demersum HOM05D001548 ORTHO05D003922 3.0e-15 84.7 54 74.1
RcHm_v2.0_Chr5g0006731 Rosa chinensis HOM05D001548 ORTHO05D003922 6.7e-15 83.6 62 62.9
Pp3c12_2540 Physcomitrium patens HOM05D001548 ORTHO05D003922 1.7e-13 79.0 62 64.5
Zm00001eb258260 Zea mays HOM05D001548 ORTHO05D003922 2.8e-13 78.2 63 60.3
SMO367G0057 Selaginella moellendorffii HOM05D001548 ORTHO05D003922 6.3e-13 77.0 62 59.7
GSVIVG01017416001 Vitis vinifera HOM05D000311 ORTHO05D000183 1.8e-12 75.5 59 64.4
Sed0014396 Sechium edule HOM05D001548 ORTHO05D003922 2.4e-12 75.1 62 66.1
Os02g0805600 Oryza sativa ssp. japonica HOM05D001548 ORTHO05D003922 5.0e-10 67.4 64 53.1
RcHm_v2.0_Chr5g0030211 Rosa chinensis HOM05D001548 ORTHO05D003922 3.6e-08 61.2 53 56.6
RcHm_v2.0_Chr5g0030401 Rosa chinensis HOM05D000001 ORTHO05D343512 3.6e-08 61.2 53 56.6
Psat1g207920 Pisum sativum HOM05D001548 ORTHO05D003922 6.1e-08 60.5 62 43.5
RcHm_v2.0_Chr5g0030471 Rosa chinensis HOM05D001548 ORTHO05D003922 8.0e-08 60.1 53 56.6
Cc09_g10030 Coffea canephora HOM05D001548 ORTHO05D003922 4.0e-07 57.8 43 65.1
RcHm_v2.0_Chr5g0003651 Rosa chinensis HOM05D001548 ORTHO05D003922 5.2e-07 57.4 48 54.2
Pp3c24_17450 Physcomitrium patens HOM05D001548 ORTHO05D003922 1.2e-06 56.2 62 50.0
Aqoxy339s001 Aquilegia oxysepala HOM05D001548 ORTHO05D003922 1.5e-06 55.8 62 46.8
FAN16G2449 Fragaria x ananassa HOM05D001548 ORTHO05D003922 9.7e-06 53.1 58 46.6


User provided reference genes

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