Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc2620.1 Carica papaya HOM05D003542 ORTHO05D018761 2.8e-48 194.9 94 100.0
Manes.17G001100 Manihot esculenta HOM05D003542 ORTHO05D004799 5.3e-47 190.7 94 94.7
Hma1.2p1_0839F.1_g226340 Hydrangea macrophylla HOM05D003542 ORTHO05D004799 7.6e-46 186.8 94 92.6
Atru.chr8.2622 Acer truncatum HOM05D003542 ORTHO05D004799 9.9e-46 186.4 94 92.6
Gohir.A08G149000 Gossypium hirsutum HOM05D003542 ORTHO05D004799 1.3e-45 186.0 94 91.5
Gohir.D08G170000 Gossypium hirsutum HOM05D003542 ORTHO05D004799 1.3e-45 186.0 94 91.5
Gorai.004G177500 Gossypium raimondii HOM05D003542 ORTHO05D004799 1.3e-45 186.0 94 91.5
MD06G1008500 Malus domestica HOM05D003542 ORTHO05D004799 1.3e-45 186.0 94 91.5
Prupe.5G011600 Prunus persica HOM05D003542 ORTHO05D004799 1.7e-45 185.7 94 91.5
TAR374G1176 Trochodendron aralioides HOM05D003542 ORTHO05D004799 1.7e-45 185.7 94 92.6
CSS0026658 Camellia sinensis var. sinensis HOM05D003542 ORTHO05D004799 2.2e-45 185.3 94 90.4
CANSAT80G0877 Cannabis sativa HOM05D003542 ORTHO05D004799 2.2e-45 185.3 94 92.6
CiPaw.11G074400 Carya illinoinensis HOM05D003542 ORTHO05D004799 2.2e-45 185.3 94 92.6
CiPaw.12G055200 Carya illinoinensis HOM05D003542 ORTHO05D004799 2.9e-45 184.9 94 92.6
Cc08_g05890 Coffea canephora HOM05D003542 ORTHO05D004799 2.9e-45 184.9 94 91.5
Cfa012300 Carpinus fangiana HOM05D003542 ORTHO05D004799 4.9e-45 184.1 94 89.4
Sabra01G0180200 Salix brachista HOM05D003542 ORTHO05D004799 4.9e-45 184.1 94 90.4
GSVIVG01036881001 Vitis vinifera HOM05D003542 ORTHO05D004799 4.9e-45 184.1 94 90.4
Actinidia01250 Actinidia chinensis HOM05D003542 ORTHO05D004799 6.4e-45 183.7 94 90.4
MBI15_g33455_MAGBIO Magnolia biondii HOM05D003542 ORTHO05D004799 8.4e-45 183.3 94 91.5
Potri.004G235800 Populus trichocarpa HOM05D003542 ORTHO05D004799 8.4e-45 183.3 94 89.4
Thecc.03G319900 Theobroma cacao HOM05D003542 ORTHO05D004799 8.4e-45 183.3 94 90.4
HanXRQChr17g0537321 Helianthus annuus HOM05D003542 ORTHO05D004799 1.1e-44 183.0 94 88.3
Rhsim11G0037300 Rhododendron simsii HOM05D003542 ORTHO05D004799 1.1e-44 183.0 94 90.4
SGA_v2.0_scaffold96G29103 Striga asiatica HOM05D003542 ORTHO05D004799 1.1e-44 183.0 94 90.4
EL10Ac5g12587 Beta vulgaris HOM05D003542 ORTHO05D004799 1.9e-44 182.2 94 88.3
AUR62030410 Chenopodium quinoa HOM05D003542 ORTHO05D004799 1.9e-44 182.2 94 88.3
Cc08_g05880 Coffea canephora HOM05D003542 ORTHO05D004799 1.9e-44 182.2 94 89.4
Haze_08429 Corylus avellana HOM05D003542 ORTHO05D004799 1.9e-44 182.2 93 89.2
Duzib205G1391 Durio zibethinus HOM05D003542 ORTHO05D004799 1.9e-44 182.2 94 90.4
ECA246G1310 Erigeron canadensis HOM05D003542 ORTHO05D004799 1.9e-44 182.2 94 89.4
HanXRQChr06g0173181 Helianthus annuus HOM05D003542 ORTHO05D004799 3.2e-44 181.4 94 88.3
THA.LOC104798529 Tarenaya hassleriana HOM05D003542 ORTHO05D004799 3.2e-44 181.4 94 90.4
TAR375G0128 Trochodendron aralioides HOM05D003542 ORTHO05D004799 3.2e-44 181.4 94 89.4
DCAR_004534 Daucus carota HOM05D003542 ORTHO05D004799 7.1e-44 180.3 94 86.2
Oeu036053.1 Olea europaea HOM05D003542 ORTHO05D004799 7.1e-44 180.3 94 88.3
CDE01G0249 Ceratophyllum demersum HOM05D003542 ORTHO05D004799 9.3e-44 179.9 94 89.4
Ciclev10011269m.g Citrus clementina HOM05D003542 ORTHO05D004799 9.3e-44 179.9 94 88.3
TWI60G1302 Tripterygium wilfordii HOM05D003542 ORTHO05D004799 9.3e-44 179.9 94 87.2
ClCG11G016080 Citrullus lanatus HOM05D003542 ORTHO05D004799 1.2e-43 179.5 94 85.1
MELO3C010524.2 Cucumis melo HOM05D003542 ORTHO05D004799 1.2e-43 179.5 94 85.1
RcHm_v2.0_Chr7g0215361 Rosa chinensis HOM05D003542 ORTHO05D004799 1.2e-43 179.5 94 88.3
Aa31LG2G14340 Aethionema arabicum HOM05D003542 ORTHO05D004799 1.6e-43 179.1 94 87.2
BcaB02g09412 Brassica carinata HOM05D003542 ORTHO05D004799 1.6e-43 179.1 94 88.3
BcaC02g11676 Brassica carinata HOM05D003542 ORTHO05D004799 1.6e-43 179.1 94 88.3
BcaC02g11677 Brassica carinata HOM05D003542 ORTHO05D004799 1.6e-43 179.1 94 88.3
A05p10120 Brassica napus HOM05D003542 ORTHO05D004799 1.6e-43 179.1 94 88.3
BraA05t19953Z Brassica rapa HOM05D003542 ORTHO05D004799 1.6e-43 179.1 94 88.3
AUR62010484 Chenopodium quinoa HOM05D003542 ORTHO05D004799 1.6e-43 179.1 94 86.2
Lsat_1_v5_gn_3_20301 Lactuca sativa HOM05D003542 ORTHO05D004799 1.6e-43 179.1 94 87.2
Eucgr.E01147 Eucalyptus grandis HOM05D003542 ORTHO05D004799 2.1e-43 178.7 94 86.2
FAN08G1408 Fragaria x ananassa HOM05D003542 ORTHO05D004799 2.1e-43 178.7 94 87.2
PGR042G1333 Punica granatum HOM05D003542 ORTHO05D004799 2.1e-43 178.7 94 86.2
MSTRG.25746 Avicennia marina HOM05D003542 ORTHO05D004799 2.7e-43 178.3 94 88.3
Thhalv10016368m.g Eutrema salsugineum HOM05D003542 ORTHO05D004799 3.5e-43 177.9 94 88.3
FvH4_5g25240 Fragaria vesca HOM05D003542 ORTHO05D004799 3.5e-43 177.9 94 87.2
FAN13G1207 Fragaria x ananassa HOM05D003542 ORTHO05D004799 3.5e-43 177.9 94 87.2
FAN18G2203 Fragaria x ananassa HOM05D003542 ORTHO05D004799 3.5e-43 177.9 94 87.2
Aqoxy5G03565 Aquilegia oxysepala HOM05D003542 ORTHO05D004799 4.6e-43 177.6 94 88.3
AL4G31650 Arabidopsis lyrata HOM05D003542 ORTHO05D004799 4.6e-43 177.6 94 87.2
AT2G35610 Arabidopsis thaliana HOM05D003542 ORTHO05D004799 4.6e-43 177.6 94 87.2
A04p27010 Brassica napus HOM05D003542 ORTHO05D004799 4.6e-43 177.6 94 87.2
C04p12510 Brassica napus HOM05D003542 ORTHO05D004799 4.6e-43 177.6 94 87.2
BolC4t22898H Brassica oleracea HOM05D003542 ORTHO05D004799 4.6e-43 177.6 94 87.2
BraA04t18202Z Brassica rapa HOM05D003542 ORTHO05D004799 4.6e-43 177.6 94 87.2
CsaV3_4G027890 Cucumis sativus L. HOM05D003542 ORTHO05D004799 4.6e-43 177.6 94 84.0
Manes.15G191800 Manihot esculenta HOM05D003542 ORTHO05D004799 4.6e-43 177.6 94 87.2
CARHR129800 Cardamine hirsuta HOM05D003542 ORTHO05D004799 6.0e-43 177.2 94 86.2
Glyma.01G153600 Glycine max HOM05D003542 ORTHO05D004799 6.0e-43 177.2 94 89.4
Glyma.11G091000 Glycine max HOM05D003542 ORTHO05D004799 6.0e-43 177.2 94 90.4
Sed0016507 Sechium edule HOM05D003542 ORTHO05D004799 7.8e-43 176.8 94 83.0
BcaC02g07760 Brassica carinata HOM05D003542 ORTHO05D004799 1.0e-42 176.4 94 86.2
C04p64420 Brassica napus HOM05D003542 ORTHO05D004799 1.0e-42 176.4 94 86.2
BolC4t27926H Brassica oleracea HOM05D003542 ORTHO05D004799 1.0e-42 176.4 94 86.2
PSO502G0023 Papaver somniferum HOM05D003542 ORTHO05D004799 1.0e-42 176.4 94 88.3
PSO675G5456 Papaver somniferum HOM05D003542 ORTHO05D004799 1.0e-42 176.4 94 88.3
BcaC02g11616 Brassica carinata HOM05D003542 ORTHO05D004799 1.3e-42 176.0 94 87.2
C04p13130 Brassica napus HOM05D003542 ORTHO05D004799 1.3e-42 176.0 94 87.2
Carub.0004s1730 Capsella rubella HOM05D003542 ORTHO05D004799 1.3e-42 176.0 94 85.1
Migut.A00523 Erythranthe guttata HOM05D003542 ORTHO05D004799 1.3e-42 176.0 94 85.1
Phvul.003G278500 Phaseolus vulgaris HOM05D003542 ORTHO05D004799 1.3e-42 176.0 94 87.2
Psat4g107640 Pisum sativum HOM05D003542 ORTHO05D004799 1.3e-42 176.0 94 86.2
Lj8C8T8 Lonicera japonica HOM05D003542 ORTHO05D004799 1.7e-42 175.6 94 86.2
Sp4g17820 Schrenkiella parvula HOM05D003542 ORTHO05D004799 1.7e-42 175.6 94 87.2
arahy.Tifrunner.gnm1.ann1.B24I2L Arachis hypogaea HOM05D003542 ORTHO05D004799 2.3e-42 175.3 94 86.2
Gohir.D12G204200 Gossypium hirsutum HOM05D003542 ORTHO05D004799 3.0e-42 174.9 94 84.0
Gorai.008G219000 Gossypium raimondii HOM05D003542 ORTHO05D004799 3.0e-42 174.9 94 84.0
Ca_22456_v3 Cicer arietinum L. HOM05D003542 ORTHO05D004799 3.9e-42 174.5 94 85.1
Ca_25048_v3 Cicer arietinum L. HOM05D003542 ORTHO05D004799 3.9e-42 174.5 94 86.2
Nn3g19110 Nelumbo nucifera HOM05D003542 ORTHO05D004799 3.9e-42 174.5 94 86.2
Peaxi162Scf00053g00006 Petunia axillaris HOM05D003542 ORTHO05D004799 3.9e-42 174.5 94 84.0
VMungo0251G1439 Vigna mungo HOM05D003542 ORTHO05D004799 3.9e-42 174.5 94 86.2
Gohir.A12G201400 Gossypium hirsutum HOM05D003542 ORTHO05D004799 5.1e-42 174.1 94 83.0
BcaB06g28850 Brassica carinata HOM05D003542 ORTHO05D004799 6.6e-42 173.7 94 85.1
SalBow4G0461 Salvia bowleyana HOM05D003542 ORTHO05D004799 6.6e-42 173.7 94 83.0
SHI32767 Sapria himalayana HOM05D003542 ORTHO05D004799 6.6e-42 173.7 93 89.2
HPP92_014853 Vanilla planifolia HOM05D003542 ORTHO05D004799 6.6e-42 173.7 94 87.2
VMungo1215G0924 Vigna mungo HOM05D003542 ORTHO05D004799 6.6e-42 173.7 94 88.3
Aa31LG9G15750 Aethionema arabicum HOM05D003542 ORTHO05D004799 1.1e-41 172.9 100 83.0
TPR.G8991 Trifolium pratense HOM05D003542 ORTHO05D004799 1.1e-41 172.9 94 86.2
Glyma.16G109700 Glycine max HOM05D003542 ORTHO05D004799 1.5e-41 172.6 94 85.1
Lj2g0004183 Lotus japonicus HOM05D003542 ORTHO05D004799 1.5e-41 172.6 94 86.2
Lj4g0008068 Lotus japonicus HOM05D003542 ORTHO05D004799 1.5e-41 172.6 94 84.0
Phvul.002G122000 Phaseolus vulgaris HOM05D003542 ORTHO05D004799 1.5e-41 172.6 94 87.2
Sed0027808 Sechium edule HOM05D003542 ORTHO05D004799 1.9e-41 172.2 93 82.8
Lalb_Chr05g0215151 Lupinus albus HOM05D003542 ORTHO05D004799 2.5e-41 171.8 94 84.0
Medtr8g072310 Medicago truncatula HOM05D003542 ORTHO05D004799 3.3e-41 171.4 94 85.1
THA.LOC104814389 Tarenaya hassleriana HOM05D003542 ORTHO05D004799 3.3e-41 171.4 93 84.9
Cc04_g11580 Coffea canephora HOM05D003542 ORTHO05D004799 4.3e-41 171.0 94 85.1
Nitab4.5_0002603g0020 Nicotiana tabacum HOM05D003542 ORTHO05D004799 4.3e-41 171.0 94 81.9
Nitab4.5_0006371g0020 Nicotiana tabacum HOM05D003542 ORTHO05D004799 4.3e-41 171.0 94 81.9
ATR0568G062 Amborella trichopoda HOM05D003542 ORTHO05D004799 5.6e-41 170.6 94 85.1
arahy.Tifrunner.gnm1.ann1.GAUN3U Arachis hypogaea HOM05D003542 ORTHO05D004799 5.6e-41 170.6 94 85.1
arahy.Tifrunner.gnm1.ann1.JPC2KC Arachis hypogaea HOM05D003542 ORTHO05D004799 5.6e-41 170.6 94 85.1
Medtr5g025590 Medicago truncatula HOM05D003542 ORTHO05D004799 7.3e-41 170.2 94 85.1
QL12p003762 Quercus lobata HOM05D003542 ORTHO05D004799 7.3e-41 170.2 108 77.8
Solyc08g075340.3 Solanum lycopersicum HOM05D003542 ORTHO05D004799 1.3e-40 169.5 94 81.9
TPR.G14272 Trifolium pratense HOM05D003542 ORTHO05D004799 1.3e-40 169.5 94 83.0
Zm00001eb049170 Zea mays HOM05D003542 ORTHO05D004799 1.3e-40 169.5 94 81.9
Glyma.16G076700 Glycine max HOM05D003542 ORTHO05D004799 1.6e-40 169.1 94 85.1
Hund14306 Selenicereus undatus HOM05D003542 ORTHO05D004799 1.6e-40 169.1 94 84.0
CAN.G998.13 Capsicum annuum HOM05D003542 ORTHO05D004799 2.1e-40 168.7 94 80.9
Psat2g145280 Pisum sativum HOM05D003542 ORTHO05D004799 3.6e-40 167.9 94 81.9
Sopen08g023950 Solanum pennellii HOM05D003542 ORTHO05D004799 3.6e-40 167.9 94 80.9
Ah.12g058430 Amaranthus hybridus HOM05D003542 ORTHO05D004799 8.1e-40 166.8 94 78.7
Sc07g0007990 Simmondsia chinensis HOM05D003542 ORTHO05D004799 1.1e-39 166.4 95 82.1
Lalb_Chr05g0229201 Lupinus albus HOM05D003542 ORTHO05D004799 5.3e-39 164.1 94 80.9
Sed0024265 Sechium edule HOM05D003542 ORTHO05D004799 6.9e-39 163.7 93 76.3
Cc04_g11570 Coffea canephora HOM05D003542 ORTHO05D004799 2.6e-38 161.8 94 81.9
MBI06_g04285_MAGBIO Magnolia biondii HOM05D003542 ORTHO05D018761 2.6e-38 161.8 94 77.7
arahy.Tifrunner.gnm1.ann1.2M3042 Arachis hypogaea HOM05D003542 ORTHO05D004799 5.8e-38 160.6 94 81.9
Cc04_g11590 Coffea canephora HOM05D003542 ORTHO05D004799 4.9e-37 157.5 94 79.8
Mapoly0019s0126 Marchantia polymorpha HOM05D003542 ORTHO05D004799 1.1e-36 156.4 94 71.3
Lalb_Chr16g0391801 Lupinus albus HOM05D003542 ORTHO05D004799 2.4e-36 155.2 93 76.3
vmacro00095 Vaccinium macrocarpon HOM05D003542 ORTHO05D004799 4.6e-35 151.0 147 55.8
SEGI_27818 Sequoiadendron giganteum HOM05D003542 ORTHO05D004799 8.7e-34 146.7 93 72.0
Pp3c12_18450 Physcomitrium patens HOM05D003542 ORTHO05D004799 1.6e-32 142.5 94 68.1
SMO329G0009 Selaginella moellendorffii HOM05D003542 ORTHO05D004799 6.4e-29 130.6 94 61.7
AagrBONN_evm.TU.Sc2ySwM_344.2406 Anthoceros agrestis HOM05D003542 ORTHO05D004799 2.5e-28 128.6 92 60.9
CBR_g30748 Chara braunii HOM05D003542 ORTHO05D004799 1.6e-27 125.9 94 62.8
MCO06G136 Micromonas commoda HOM05D003542 ORTHO05D004799 2.5e-25 118.6 94 55.3
Cre14.g629000 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 7.1e-20 100.5 98 49.0
FAN18G0768 Fragaria x ananassa HOM05D003542 ORTHO05D004799 2.7e-19 98.6 45 93.3
PRCOL_00003662 Prasinoderma coloniale HOM05D003542 ORTHO05D004799 4.6e-19 97.8 103 42.7
COL.COLO4_16751 Corchorus olitorius HOM05D003542 ORTHO05D004799 1.8e-18 95.9 44 93.2
HanXRQChr17g0537331 Helianthus annuus HOM05D003542 ORTHO05D004799 6.7e-18 94.0 50 88.0
Oeu033614.1 Olea europaea HOM05D003542 ORTHO05D004799 1.9e-17 92.4 45 84.4
Cre07.g332500 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 3.3e-17 91.7 102 43.1
HanXRQChr17g0537351 Helianthus annuus HOM05D003542 ORTHO05D004799 7.4e-17 90.5 50 80.0
PRCOL_00007053 Prasinoderma coloniale HOM05D003542 ORTHO05D004799 1.6e-16 89.4 91 47.3
CSS0037399 Camellia sinensis var. sinensis HOM05D003542 ORTHO05D004799 6.9e-15 84.0 44 81.8
MCO04G331 Micromonas commoda HOM05D003542 ORTHO05D004799 5.0e-13 77.8 102 44.1
Cre13.g568200 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 5.1e-10 67.8 99 35.4
arahy.Tifrunner.gnm1.ann1.97RZQE Arachis hypogaea HOM05D002940 ORTHO05D003344 9.7e-09 63.5 32 78.1
Cre04.g217949 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 2.2e-08 62.4 100 34.0
Cre01.g000500 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 1.4e-07 59.7 98 35.7
Cre01.g000400 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 2.6e-06 55.5 100 32.0
Cre07.g340950 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 4.5e-06 54.7 91 37.4
CBR_g41334 Chara braunii HOM05D003542 ORTHO05D004799 5.9e-06 54.3 88 37.5
Cre01.g000450 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 5.9e-06 54.3 98 32.7


User provided reference genes

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