Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc26.42 Carica papaya HOM05D005472 ORTHO05D005897 3.0e-174 615.1 329 100.0
Thecc.08G044600 Theobroma cacao HOM05D005472 ORTHO05D005897 3.2e-67 259.6 326 46.0
Duzib041G0268 Durio zibethinus HOM05D005472 ORTHO05D005897 1.2e-66 257.7 326 45.4
Gohir.D05G258500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 5.7e-64 248.8 326 44.8
Gohir.A05G257000 Gossypium hirsutum HOM05D005472 ORTHO05D005897 1.7e-63 247.3 326 44.5
Gorai.009G270000 Gossypium raimondii HOM05D005472 ORTHO05D005897 3.7e-63 246.1 326 44.2
Duzib116G0175 Durio zibethinus HOM05D005472 ORTHO05D005897 8.2e-63 245.0 330 44.5
Gorai.009G194600 Gossypium raimondii HOM05D005472 ORTHO05D005897 1.3e-60 237.7 304 45.4
Potri.005G239500 Populus trichocarpa HOM05D005472 ORTHO05D005897 1.7e-60 237.3 318 45.3
COL.COLO4_26145 Corchorus olitorius HOM05D005472 ORTHO05D005897 2.2e-60 236.9 315 45.7
THA.LOC104809508 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 2.9e-60 236.5 325 44.0
Gohir.D05G189400 Gossypium hirsutum HOM05D005472 ORTHO05D005897 3.8e-60 236.1 304 45.4
QL02p011634 Quercus lobata HOM05D005472 ORTHO05D005897 8.5e-60 235.0 321 47.4
Gohir.A05G186500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 1.9e-59 233.8 318 43.7
Sabra05G0185100 Salix brachista HOM05D005472 ORTHO05D005897 9.4e-59 231.5 318 44.7
TWI12G0454 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 3.0e-57 226.5 316 44.6
Sp1g17770 Schrenkiella parvula HOM05D005472 ORTHO05D005897 3.9e-57 226.1 314 44.9
Atru.chr13.291 Acer truncatum HOM05D005472 ORTHO05D005897 1.1e-56 224.6 352 43.5
Cfa013951 Carpinus fangiana HOM05D005472 ORTHO05D005897 1.5e-56 224.2 318 45.6
TAR628G1150 Trochodendron aralioides HOM05D005472 ORTHO05D005897 2.2e-55 220.3 339 42.5
Prupe.1G365300 Prunus persica HOM05D005472 ORTHO05D005897 3.7e-55 219.5 328 43.0
TWI36G1185 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 3.7e-55 219.5 316 43.0
THA.LOC104811410 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 4.8e-55 219.2 288 45.8
CiPaw.08G066500 Carya illinoinensis HOM05D005472 ORTHO05D005897 1.6e-53 214.2 320 43.1
BraA07t29336Z Brassica rapa HOM05D005472 ORTHO05D005897 2.0e-53 213.8 317 44.8
Potri.002G022200 Populus trichocarpa HOM05D005472 ORTHO05D005897 2.6e-53 213.4 318 42.5
AL1G32710 Arabidopsis lyrata HOM05D005472 ORTHO05D005897 1.0e-52 211.5 295 44.7
ClCG05G018260 Citrullus lanatus HOM05D005472 ORTHO05D005897 2.2e-52 210.3 326 41.7
AT1G19980 Arabidopsis thaliana HOM05D005472 ORTHO05D005897 4.2e-51 206.1 314 43.0
CsaV3_3G045880 Cucumis sativus L. HOM05D005472 ORTHO05D005897 4.2e-51 206.1 326 42.0
GSVIVG01009906001 Vitis vinifera HOM05D005472 ORTHO05D005897 7.2e-51 205.3 332 40.4
CARHR020470 Cardamine hirsuta HOM05D005472 ORTHO05D005897 9.4e-51 204.9 295 44.1
BolC7t42878H Brassica oleracea HOM05D005472 ORTHO05D005897 2.7e-50 203.4 317 42.6
Sabra02G0018300 Salix brachista HOM05D005472 ORTHO05D005897 3.6e-50 203.0 312 43.3
CiPaw.07G149800 Carya illinoinensis HOM05D005472 ORTHO05D005897 4.7e-50 202.6 319 42.3
Haze_22634 Corylus avellana HOM05D005472 ORTHO05D005897 1.4e-49 201.1 323 42.7
Manes.05G147400 Manihot esculenta HOM05D005472 ORTHO05D005897 1.4e-49 201.1 316 41.8
Aa31LG7G4450 Aethionema arabicum HOM05D005472 ORTHO05D005897 2.3e-49 200.3 314 41.4
PGR031G2834 Punica granatum HOM05D005472 ORTHO05D005897 3.0e-49 199.9 330 42.1
Thhalv10008122m.g Eutrema salsugineum HOM05D005472 ORTHO05D005897 4.0e-49 199.5 317 42.0
Dinv31847 Davidia involucrata HOM05D005472 ORTHO05D005897 5.2e-49 199.1 319 42.9
Ciclev10001635m.g Citrus clementina HOM05D005472 ORTHO05D005897 1.7e-47 194.1 297 43.4
Carub.0001s1951 Capsella rubella HOM05D005472 ORTHO05D005897 2.2e-47 193.7 285 44.2
BcaB03g14419 Brassica carinata HOM05D005472 ORTHO05D005897 2.8e-47 193.4 317 40.1
Sed0019370 Sechium edule HOM05D005472 ORTHO05D005897 2.8e-47 193.4 322 41.3
BcaB03g14348 Brassica carinata HOM05D005472 ORTHO05D005897 6.3e-47 192.2 342 39.8
MELO3C003750.2 Cucumis melo HOM05D005472 ORTHO05D005897 1.8e-46 190.7 325 39.7
Manes.18G013500 Manihot esculenta HOM05D005472 ORTHO05D005897 2.4e-46 190.3 316 41.8
Eucgr.F00587 Eucalyptus grandis HOM05D005472 ORTHO05D005897 5.3e-46 189.1 340 38.8
BcaB03g12884 Brassica carinata HOM05D005472 ORTHO05D005897 1.6e-45 187.6 285 43.2
C07p23450 Brassica napus HOM05D005472 ORTHO05D005897 7.7e-45 185.3 342 39.8
Lalb_Chr20g0120221 Lupinus albus HOM05D005472 ORTHO05D005897 1.5e-43 181.0 345 38.0
BraA08t34891Z Brassica rapa HOM05D005472 ORTHO05D005897 7.2e-43 178.7 291 41.9
ClCG08G014280 Citrullus lanatus HOM05D005472 ORTHO05D005897 8.0e-42 175.3 330 38.2
Lj4A797T57 Lonicera japonica HOM05D005472 ORTHO05D005897 2.3e-41 173.7 309 39.5
A08p29540 Brassica napus HOM05D005472 ORTHO05D005897 1.2e-40 171.4 291 40.2
FAN20G3206 Fragaria x ananassa HOM05D005472 ORTHO05D005897 1.2e-40 171.4 342 36.5
TAR376G0796 Trochodendron aralioides HOM05D005472 ORTHO05D003948 1.2e-40 171.4 321 39.3
Solyc04g081450.3 Solanum lycopersicum HOM05D005472 ORTHO05D005897 4.4e-40 169.5 327 35.8
FAN15G2782 Fragaria x ananassa HOM05D005472 ORTHO05D005897 7.5e-40 168.7 342 36.3
Nn1g05892 Nelumbo nucifera HOM05D005472 ORTHO05D005897 7.5e-40 168.7 327 37.0
PSO170G4377 Papaver somniferum HOM05D005472 ORTHO05D005897 7.5e-40 168.7 294 38.1
Peaxi162Scf00438g00827 Petunia axillaris HOM05D005472 ORTHO05D005897 9.8e-40 168.3 306 37.6
CAN.G311.30 Capsicum annuum HOM05D005472 ORTHO05D005897 1.3e-39 167.9 295 36.9
FvH4_2g38440 Fragaria vesca HOM05D005472 ORTHO05D005897 2.8e-39 166.8 343 36.4
PSO700G0202 Papaver somniferum HOM05D005472 ORTHO05D005897 2.8e-39 166.8 294 37.4
FAN27G2825 Fragaria x ananassa HOM05D005472 ORTHO05D005897 3.7e-39 166.4 341 35.8
Sopen04g035060 Solanum pennellii HOM05D005472 ORTHO05D005897 3.7e-39 166.4 327 35.5
AUR62033908 Chenopodium quinoa HOM05D005472 ORTHO05D005897 8.3e-39 165.2 322 34.8
CsaV3_2G029530 Cucumis sativus L. HOM05D005472 ORTHO05D005897 8.3e-39 165.2 338 36.1
Cc10_g01680 Coffea canephora HOM05D005472 ORTHO05D005897 1.1e-38 164.9 311 35.4
MELO3C011012.2 Cucumis melo HOM05D005472 ORTHO05D005897 1.1e-38 164.9 321 36.8
RcHm_v2.0_Chr6g0302861 Rosa chinensis HOM05D005472 ORTHO05D005897 1.4e-38 164.5 330 34.5
Sed0011447 Sechium edule HOM05D005472 ORTHO05D005897 1.8e-38 164.1 313 35.8
PGSC0003DMG400009864 Solanum tuberosum HOM05D005472 ORTHO05D005897 4.1e-38 162.9 328 35.1
BolC8t49626H Brassica oleracea HOM05D005472 ORTHO05D005897 7.0e-38 162.2 285 39.3
C08p19880 Brassica napus HOM05D005472 ORTHO05D005897 9.1e-38 161.8 285 39.3
SHI08069 Sapria himalayana HOM05D005472 ORTHO05D005897 9.1e-38 161.8 322 34.5
BcaC07g39015 Brassica carinata HOM05D005472 ORTHO05D005897 3.5e-37 159.8 285 39.3
Glyma.15G134600 Glycine max HOM05D005472 ORTHO05D005897 5.9e-37 159.1 329 34.7
EL10Ac1g02216 Beta vulgaris HOM05D005472 ORTHO05D005897 3.8e-36 156.4 288 37.5
Glyma.09G028700 Glycine max HOM05D005472 ORTHO05D005897 3.8e-36 156.4 331 35.3
A07p16090 Brassica napus HOM05D005472 ORTHO05D005897 6.6e-36 155.6 232 43.5
Actinidia15422 Actinidia chinensis HOM05D005472 ORTHO05D005897 1.5e-35 154.5 309 34.6
MD15G1012000 Malus domestica HOM05D005472 ORTHO05D005897 1.5e-35 154.5 328 35.1
Atru.chr2.2949 Acer truncatum HOM05D005472 ORTHO05D005897 1.9e-35 154.1 221 45.7
CANSAT25G0086 Cannabis sativa HOM05D005472 ORTHO05D005897 5.5e-35 152.5 286 37.4
Nitab4.5_0002561g0030 Nicotiana tabacum HOM05D005472 ORTHO05D005897 1.4e-33 147.9 279 34.8
Ah.00g000180 Amaranthus hybridus HOM05D005472 ORTHO05D005897 2.3e-33 147.1 275 33.8
Ca_00891_v3 Cicer arietinum L. HOM05D005472 ORTHO05D005897 3.0e-33 146.7 311 34.1
Medtr2g031630 Medicago truncatula HOM05D005472 ORTHO05D005897 5.2e-33 146.0 312 33.3
CSS0003502 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 6.8e-33 145.6 312 33.3
Oeu054693.1 Olea europaea HOM05D005472 ORTHO05D005897 8.9e-33 145.2 311 35.0
VMungo0540G2141 Vigna mungo HOM05D005472 ORTHO05D005897 9.8e-32 141.7 322 33.2
Hund05189 Selenicereus undatus HOM05D005472 ORTHO05D005897 2.8e-31 140.2 317 33.8
DCAR_023016 Daucus carota HOM05D005472 ORTHO05D005897 1.8e-30 137.5 274 35.0
PGR031G2226 Punica granatum HOM05D005472 ORTHO05D005897 2.4e-30 137.1 279 37.6
Phvul.006G124300 Phaseolus vulgaris HOM05D005472 ORTHO05D005897 3.1e-30 136.7 315 33.3
Psat1g164760 Pisum sativum HOM05D005472 ORTHO05D005897 5.4e-30 136.0 323 30.7
CSS0003212 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 7.8e-29 132.1 310 32.6
AUR62041912 Chenopodium quinoa HOM05D005472 ORTHO05D005897 1.0e-28 131.7 295 33.2
arahy.Tifrunner.gnm1.ann1.C4XWSY Arachis hypogaea HOM05D000672 ORTHO05D000522 1.7e-28 131.0 327 33.3
HanXRQChr05g0145181 Helianthus annuus HOM05D005472 ORTHO05D005897 1.1e-27 128.3 287 33.4
MSTRG.1192 Avicennia marina HOM05D005472 ORTHO05D005897 2.5e-27 127.1 297 33.3
Lj6g0021117 Lotus japonicus HOM05D005472 ORTHO05D005897 4.3e-27 126.3 329 32.2
arahy.Tifrunner.gnm1.ann1.MUE9LA Arachis hypogaea HOM05D000672 ORTHO05D000522 7.3e-27 125.6 328 33.2
TPR.G15190 Trifolium pratense HOM05D005472 ORTHO05D005897 2.1e-26 124.0 311 29.6
TWI56G0716 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 6.1e-26 122.5 184 41.3
Ah.11g039690 Amaranthus hybridus HOM05D005472 ORTHO05D005897 8.0e-26 122.1 292 32.2
vmacro07586 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 1.4e-25 121.3 307 30.9
CDE05G0022 Ceratophyllum demersum HOM05D004890 ORTHO05D005869 5.2e-25 119.4 303 31.7
HanXRQChr11g0322621 Helianthus annuus HOM05D005472 ORTHO05D005897 5.2e-25 119.4 311 31.2
CDE05G3315 Ceratophyllum demersum HOM05D005472 ORTHO05D005897 8.9e-25 118.6 309 31.4
Oeu007327.1 Olea europaea HOM05D005472 ORTHO05D005897 1.5e-24 117.9 285 33.7
MBI09_g31922_MAGBIO Magnolia biondii HOM05D005472 ORTHO05D005897 9.8e-24 115.2 281 32.0
vmacro21726 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 1.6e-21 107.8 307 29.6
SalBow7G1801 Salvia bowleyana HOM05D005472 ORTHO05D005897 6.0e-21 105.9 344 28.2
Actinidia16989 Actinidia chinensis HOM05D005472 ORTHO05D005897 5.0e-20 102.8 234 31.6
MD08G1013200 Malus domestica HOM05D005472 ORTHO05D005897 2.1e-18 97.4 133 45.9
Migut.C00835 Erythranthe guttata HOM05D005472 ORTHO05D005897 1.4e-17 94.7 308 27.3
Lsat_1_v5_gn_9_46920 Lactuca sativa HOM05D005472 ORTHO05D005897 3.1e-17 93.6 224 31.2
Os04g0117200 Oryza sativa ssp. japonica HOM05D005472 ORTHO05D005897 8.9e-17 92.0 265 30.9
HPP92_025683 Vanilla planifolia HOM05D005472 ORTHO05D005897 2.6e-16 90.5 259 29.3
MSTRG.25248 Avicennia marina HOM05D005472 ORTHO05D005897 2.2e-15 87.4 159 37.7
CAN.G1271.17 Capsicum annuum HOM05D005472 ORTHO05D005897 2.4e-14 84.0 239 30.5
unitig_0.g2085 Utricularia gibba HOM05D005472 ORTHO05D005897 2.4e-14 84.0 218 28.0
SGA_v2.0_scaffold11G05917 Striga asiatica HOM05D005472 ORTHO05D005897 3.2e-14 83.6 302 27.5
ATR0810G127 Amborella trichopoda HOM05D005472 ORTHO05D005897 1.0e-12 78.6 235 28.9
BcaB08g36328 Brassica carinata HOM05D005472 ORTHO05D005897 1.3e-12 78.2 149 35.6
Rhsim06G0021600 Rhododendron simsii HOM05D005472 ORTHO05D005897 1.7e-12 77.8 326 26.7
Aqoxy5G01787 Aquilegia oxysepala HOM05D000073 ORTHO05D000033 1.1e-11 75.1 198 30.8
SEGI_34762 Sequoiadendron giganteum HOM05D005472 ORTHO05D005897 1.2e-10 71.6 278 23.4
Zm00001eb121210 Zea mays HOM05D005472 ORTHO05D005897 1.6e-10 71.2 216 26.9
Sc02g0008580 Simmondsia chinensis HOM05D005472 ORTHO05D005897 2.1e-10 70.9 304 25.7
BcaB08g37342 Brassica carinata HOM05D005472 ORTHO05D005897 8.1e-10 68.9 56 60.7
ECA232G3880 Erigeron canadensis HOM05D005472 ORTHO05D005897 4.0e-09 66.6 216 25.9
SGA_v2.0_scaffold92G28230 Striga asiatica HOM05D005472 ORTHO05D005897 3.4e-08 63.5 306 25.5
MBI09_g43704_MAGBIO Magnolia biondii HOM05D005472 ORTHO05D005897 3.2e-06 57.0 127 33.1
CANSAT78G2470 Cannabis sativa HOM05D005472 ORTHO05D005897 9.2e-06 55.5 140 34.3


User provided reference genes

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