Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc26.236 Carica papaya HOM05D005792 ORTHO05D007171 2.7e-12 73.9 36 100.0
AT1G76150 Arabidopsis thaliana HOM05D005792 ORTHO05D007171 1.2e-10 68.6 36 86.1
Lalb_Chr23g0265871 Lupinus albus HOM05D005792 ORTHO05D007171 2.0e-10 67.8 36 88.9
Prupe.1G357300 Prunus persica HOM05D005792 ORTHO05D007171 2.0e-10 67.8 36 88.9
Sp5g31280 Schrenkiella parvula HOM05D005792 ORTHO05D007171 2.0e-10 67.8 36 86.1
VMungo1309G0997 Vigna mungo HOM05D005792 ORTHO05D007171 2.0e-10 67.8 36 88.9
AL2G36210 Arabidopsis lyrata HOM05D005792 ORTHO05D007171 2.6e-10 67.4 36 83.3
Lj1g0011663 Lotus japonicus HOM05D005792 ORTHO05D007171 3.4e-10 67.0 36 88.9
BcaC08g47286 Brassica carinata HOM05D005792 ORTHO05D007171 4.4e-10 66.6 36 83.3
BcaNung05119 Brassica carinata HOM05D005792 ORTHO05D007171 4.4e-10 66.6 36 83.3
A07p41720 Brassica napus HOM05D005792 ORTHO05D007171 4.4e-10 66.6 36 83.3
C06p50100 Brassica napus HOM05D005792 ORTHO05D007171 4.4e-10 66.6 36 83.3
BolC6t40050H Brassica oleracea HOM05D005792 ORTHO05D007171 4.4e-10 66.6 36 83.3
BraA07t31701Z Brassica rapa HOM05D005792 ORTHO05D007171 4.4e-10 66.6 36 83.3
CANSAT51G0003 Cannabis sativa HOM05D005792 ORTHO05D007171 9.8e-10 65.5 36 83.3
CARHR069700 Cardamine hirsuta HOM05D005792 ORTHO05D007171 9.8e-10 65.5 36 83.3
Glyma.06G019900 Glycine max HOM05D005792 ORTHO05D007171 9.8e-10 65.5 36 86.1
Carub.0002s2304 Capsella rubella HOM05D005792 ORTHO05D007171 1.7e-09 64.7 36 83.3
Manes.18G007700 Manihot esculenta HOM05D005792 ORTHO05D007171 1.7e-09 64.7 36 86.1
Glyma.04G019600 Glycine max HOM05D005792 ORTHO05D007171 2.2e-09 64.3 36 86.1
CiPaw.08G070700 Carya illinoinensis HOM05D005792 ORTHO05D007171 2.8e-09 63.9 36 83.3
THA.LOC104813765 Tarenaya hassleriana HOM05D005792 ORTHO05D007171 2.8e-09 63.9 36 80.6
FAN27G1567 Fragaria x ananassa HOM05D000201 ORTHO05D004673 3.7e-09 63.5 36 83.3
Thhalv10018917m.g Eutrema salsugineum HOM05D005792 ORTHO05D007171 6.3e-09 62.8 36 77.8
Cfa014030 Carpinus fangiana HOM05D000201 ORTHO05D004673 8.3e-09 62.4 35 82.9
MD08G1005200 Malus domestica HOM05D005792 ORTHO05D007171 8.3e-09 62.4 36 80.6
RcHm_v2.0_Chr6g0303911 Rosa chinensis HOM05D005792 ORTHO05D007171 8.3e-09 62.4 36 80.6
GSVIVG01008709001 Vitis vinifera HOM05D005792 ORTHO05D007171 8.3e-09 62.4 36 83.3
Peaxi162Scf00064g00910 Petunia axillaris HOM05D005792 ORTHO05D007171 1.1e-08 62.0 36 83.3
MELO3C011330.2 Cucumis melo HOM05D005792 ORTHO05D007171 1.4e-08 61.6 36 83.3
CsaV3_2G024540 Cucumis sativus L. HOM05D005792 ORTHO05D007171 1.4e-08 61.6 36 83.3
Dinv39569 Davidia involucrata HOM05D005792 ORTHO05D007171 1.4e-08 61.6 36 80.6
Sed0026749 Sechium edule HOM05D005792 ORTHO05D007171 1.4e-08 61.6 36 83.3
FvH4_2g37800 Fragaria vesca HOM05D005792 ORTHO05D007171 1.8e-08 61.2 36 80.6
TAR625G0413 Trochodendron aralioides HOM05D005792 ORTHO05D007171 2.4e-08 60.8 36 86.1
Aa31LG4G6270 Aethionema arabicum HOM05D005792 ORTHO05D007171 3.1e-08 60.5 36 77.8
CiPaw.08G070500 Carya illinoinensis HOM05D005792 ORTHO05D007171 3.1e-08 60.5 36 77.8
FAN15G3656 Fragaria x ananassa HOM05D000201 ORTHO05D004673 3.1e-08 60.5 36 77.8
MBI08_g05391_MAGBIO Magnolia biondii HOM05D005792 ORTHO05D007171 3.1e-08 60.5 36 83.3
Sed0027939 Sechium edule HOM05D005792 ORTHO05D007171 3.1e-08 60.5 36 80.6
arahy.Tifrunner.gnm1.ann1.NZM2IS Arachis hypogaea HOM05D005792 ORTHO05D007171 4.1e-08 60.1 36 80.6
PGR083G0297 Punica granatum HOM05D005792 ORTHO05D007171 4.1e-08 60.1 36 77.8
Haze_22722 Corylus avellana HOM05D005792 ORTHO05D007171 5.4e-08 59.7 36 77.8
Gohir.D05G256800 Gossypium hirsutum HOM05D005792 ORTHO05D007171 5.4e-08 59.7 36 77.8
Hma1.2p1_1260F.1_g270990 Hydrangea macrophylla HOM05D005792 ORTHO05D007171 5.4e-08 59.7 36 80.6
Rhsim06G0009800 Rhododendron simsii HOM05D005792 ORTHO05D007171 5.4e-08 59.7 36 77.8
Sabra02G0010800 Salix brachista HOM05D005792 ORTHO05D007171 5.4e-08 59.7 36 75.0
ClCG08G013930 Citrullus lanatus HOM05D005792 ORTHO05D007171 7.0e-08 59.3 36 80.6
Lj4C15T2 Lonicera japonica HOM05D005792 ORTHO05D007171 7.0e-08 59.3 36 75.0
Potri.005G247600 Populus trichocarpa HOM05D005792 ORTHO05D007171 7.0e-08 59.3 36 77.8
CSS0011850 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 9.1e-08 58.9 36 77.8
CSS0016825 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 9.1e-08 58.9 36 77.8
CSS0018708 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 9.1e-08 58.9 36 77.8
CSS0030340 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 9.1e-08 58.9 36 77.8
Ciclev10001939m.g Citrus clementina HOM05D005792 ORTHO05D007171 9.1e-08 58.9 36 75.0
HanXRQChr14g0429001 Helianthus annuus HOM05D005792 ORTHO05D007171 9.1e-08 58.9 34 79.4
Medtr3g115040 Medicago truncatula HOM05D005792 ORTHO05D007171 9.1e-08 58.9 36 80.6
Solyc12g094450.3 Solanum lycopersicum HOM05D005792 ORTHO05D007171 9.1e-08 58.9 36 77.8
Haze_22736 Corylus avellana HOM05D005792 ORTHO05D007171 1.2e-07 58.5 34 76.5
TWI36G1625 Tripterygium wilfordii HOM05D005792 ORTHO05D007171 1.2e-07 58.5 36 75.0
Nitab4.5_0000498g0200 Nicotiana tabacum HOM05D005792 ORTHO05D007171 1.6e-07 58.2 36 77.8
Psat5g010960 Pisum sativum HOM05D005792 ORTHO05D007171 1.6e-07 58.2 36 77.8
Sopen12g031340 Solanum pennellii HOM05D005792 ORTHO05D007171 1.6e-07 58.2 36 77.8
Atru.chr13.181 Acer truncatum HOM05D005792 ORTHO05D007171 2.7e-07 57.4 36 75.0
Gorai.009G268300 Gossypium raimondii HOM05D005792 ORTHO05D007171 2.7e-07 57.4 36 75.0
Os09g0544900 Oryza sativa ssp. japonica HOM05D005792 ORTHO05D007171 2.7e-07 57.4 36 77.8
Actinidia15473 Actinidia chinensis HOM05D005792 ORTHO05D007171 3.5e-07 57.0 35 74.3
AUR62013837 Chenopodium quinoa HOM05D005792 ORTHO05D007171 3.5e-07 57.0 36 72.2
TAR625G0324 Trochodendron aralioides HOM05D005792 ORTHO05D007171 3.5e-07 57.0 36 80.6
EL10Ac1g02028 Beta vulgaris HOM05D005792 ORTHO05D007171 4.5e-07 56.6 36 72.2
Thecc.08G054700 Theobroma cacao HOM05D005792 ORTHO05D007171 4.5e-07 56.6 36 75.0
vmacro21840 Vaccinium macrocarpon HOM05D005792 ORTHO05D007171 4.5e-07 56.6 36 72.2
Ah.11g040640 Amaranthus hybridus HOM05D005792 ORTHO05D007171 5.9e-07 56.2 36 69.4
Aqoxy6G01867 Aquilegia oxysepala HOM05D005792 ORTHO05D007171 5.9e-07 56.2 36 72.2
CAN.G401.3 Capsicum annuum HOM05D005792 ORTHO05D007171 7.7e-07 55.8 36 75.0
Cc10_g00990 Coffea canephora HOM05D005792 ORTHO05D007171 1.0e-06 55.5 36 75.0
Nn5g30890 Nelumbo nucifera HOM05D005792 ORTHO05D007171 1.0e-06 55.5 36 75.0
Atru.chr1.2256 Acer truncatum HOM05D005792 ORTHO05D007171 1.3e-06 55.1 36 69.4
Lsat_1_v5_gn_2_5940 Lactuca sativa HOM05D005792 ORTHO05D007171 1.3e-06 55.1 37 78.4
Nitab4.5_0002353g0010 Nicotiana tabacum HOM05D005792 ORTHO05D007171 1.3e-06 55.1 34 73.5
QL02p013536 Quercus lobata HOM05D005792 ORTHO05D007171 1.7e-06 54.7 35 71.4
ATR0661G150 Amborella trichopoda HOM05D005792 ORTHO05D007171 2.2e-06 54.3 36 72.2
AUR62036768 Chenopodium quinoa HOM05D005792 ORTHO05D007171 2.2e-06 54.3 36 72.2
Duzib093G0813 Durio zibethinus HOM05D005792 ORTHO05D007171 2.2e-06 54.3 36 69.4
Migut.C00916 Erythranthe guttata HOM05D005792 ORTHO05D007171 2.2e-06 54.3 36 72.2
Ca_15448_v3 Cicer arietinum L. HOM05D005792 ORTHO05D007171 2.9e-06 53.9 36 75.0
Eucgr.F01710 Eucalyptus grandis HOM05D005792 ORTHO05D007171 2.9e-06 53.9 36 72.2
Gohir.D02G118150 Gossypium hirsutum HOM05D005792 ORTHO05D007171 2.9e-06 53.9 36 69.4
Manes.05G141100 Manihot esculenta HOM05D005792 ORTHO05D007171 2.9e-06 53.9 38 73.7
TPR.G38109 Trifolium pratense HOM05D005792 ORTHO05D007171 2.9e-06 53.9 36 75.0
DCAR_016749 Daucus carota HOM05D005792 ORTHO05D007171 3.8e-06 53.5 36 72.2
Gohir.A05G255200 Gossypium hirsutum HOM05D005792 ORTHO05D007171 3.8e-06 53.5 36 69.4
PSO541G2987 Papaver somniferum HOM05D005792 ORTHO05D007171 3.8e-06 53.5 36 72.2
Atru.chr13.183 Acer truncatum HOM05D005792 ORTHO05D007171 6.5e-06 52.8 35 74.3
PSO675G2870 Papaver somniferum HOM05D005792 ORTHO05D007171 6.5e-06 52.8 36 69.4
ECA238G1749 Erigeron canadensis HOM05D005792 ORTHO05D007171 8.5e-06 52.4 28 82.1


User provided reference genes

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