Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc26.155 Carica papaya HOM05D001003 ORTHO05D002734 5.4e-81 304.3 157 100.0
Thecc.08G063500 Theobroma cacao HOM05D001003 ORTHO05D002734 1.2e-51 206.8 165 66.1
Potri.002G006900 Populus trichocarpa HOM05D001003 ORTHO05D002734 2.3e-47 192.6 154 65.6
Ciclev10000614m.g Citrus clementina HOM05D001003 ORTHO05D002734 3.0e-47 192.2 158 67.1
COL.COLO4_05302 Corchorus olitorius HOM05D001003 ORTHO05D002734 5.1e-47 191.4 156 64.7
Manes.05G125500 Manihot esculenta HOM05D001003 ORTHO05D002734 8.8e-47 190.7 153 66.0
Hma1.2p1_0699F.1_g205620 Hydrangea macrophylla HOM05D001003 ORTHO05D002734 2.0e-46 189.5 158 64.6
Cfa014120 Carpinus fangiana HOM05D001003 ORTHO05D002734 2.6e-46 189.1 155 67.1
Potri.005G254432 Populus trichocarpa HOM05D001003 ORTHO05D002734 3.3e-46 188.7 154 64.3
Oeu035854.1 Olea europaea HOM05D001003 ORTHO05D002734 4.4e-46 188.3 155 65.8
Sabra02G0005200 Salix brachista HOM05D001003 ORTHO05D002734 4.4e-46 188.3 154 63.6
Haze_22841 Corylus avellana HOM05D001003 ORTHO05D002734 7.4e-46 187.6 155 66.5
Actinidia17066 Actinidia chinensis HOM05D001003 ORTHO05D002734 4.8e-45 184.9 154 64.3
Actinidia15514 Actinidia chinensis HOM05D001003 ORTHO05D002734 1.8e-44 183.0 153 63.4
Eucgr.F03582 Eucalyptus grandis HOM05D001003 ORTHO05D002734 3.8e-42 175.3 143 67.1
MSTRG.997 Avicennia marina HOM05D001003 ORTHO05D002734 5.0e-42 174.9 158 62.0
Gorai.009G186300 Gossypium raimondii HOM05D001003 ORTHO05D002734 8.5e-42 174.1 155 61.9
Duzib116G0660 Durio zibethinus HOM05D001003 ORTHO05D002734 1.1e-41 173.7 134 66.4
Lj4A810T51 Lonicera japonica HOM05D001003 ORTHO05D002734 1.1e-41 173.7 156 59.0
Sabra05G0197200 Salix brachista HOM05D001003 ORTHO05D002734 3.2e-41 172.2 154 58.4
Gohir.A05G177900 Gossypium hirsutum HOM05D001003 ORTHO05D002734 9.4e-41 170.6 155 60.6
Gohir.D05G181300 Gossypium hirsutum HOM05D001003 ORTHO05D002734 4.7e-40 168.3 155 60.6
CSS0016131 Camellia sinensis var. sinensis HOM05D001003 ORTHO05D002734 1.0e-39 167.2 158 60.1
Prupe.5G007200 Prunus persica HOM05D001003 ORTHO05D002734 3.9e-39 165.2 155 62.6
CiPaw.08G076100 Carya illinoinensis HOM05D001003 ORTHO05D002734 5.2e-39 164.9 154 60.4
Rhsim06G0004400 Rhododendron simsii HOM05D001003 ORTHO05D002734 5.2e-39 164.9 157 61.1
Actinidia37911 Actinidia chinensis HOM05D001003 ORTHO05D002734 1.1e-38 163.7 157 58.0
TWI12G0434 Tripterygium wilfordii HOM05D001003 ORTHO05D002734 1.5e-38 163.3 152 59.9
TAR628G0861 Trochodendron aralioides HOM05D001003 ORTHO05D002734 2.6e-38 162.5 153 60.1
Nitab4.5_0001756g0190 Nicotiana tabacum HOM05D001003 ORTHO05D002734 7.4e-38 161.0 157 58.6
Cc10_g00380 Coffea canephora HOM05D001003 ORTHO05D002734 1.4e-36 156.8 163 58.3
Peaxi162Scf00680g00416 Petunia axillaris HOM05D001003 ORTHO05D002734 3.1e-36 155.6 158 57.0
AUR62035154 Chenopodium quinoa HOM05D001003 ORTHO05D002734 4.1e-36 155.2 157 57.3
arahy.Tifrunner.gnm1.ann1.5AJ9B8 Arachis hypogaea HOM05D001003 ORTHO05D002734 1.2e-35 153.7 149 58.4
Lj4C6T5 Lonicera japonica HOM05D001003 ORTHO05D002734 1.2e-35 153.7 156 58.3
PGR031G2960 Punica granatum HOM05D001003 ORTHO05D002734 1.2e-35 153.7 150 62.0
QL02p015288 Quercus lobata HOM05D001003 ORTHO05D002734 1.2e-35 153.7 155 58.7
Sopen04g036280 Solanum pennellii HOM05D001003 ORTHO05D002734 1.6e-35 153.3 157 56.1
Glyma.06G015600 Glycine max HOM05D001003 ORTHO05D002734 2.0e-35 152.9 155 56.8
PGSC0003DMG400009915 Solanum tuberosum HOM05D001003 ORTHO05D002734 2.0e-35 152.9 157 56.1
CAN.G2106.2 Capsicum annuum HOM05D001003 ORTHO05D002734 5.9e-35 151.4 159 54.1
arahy.Tifrunner.gnm1.ann1.HE6EBR Arachis hypogaea HOM05D001003 ORTHO05D002734 7.7e-35 151.0 149 57.0
Lj1g0022108 Lotus japonicus HOM05D001003 ORTHO05D002734 7.7e-35 151.0 149 57.0
Solyc04g082650.3 Solanum lycopersicum HOM05D001003 ORTHO05D002734 7.7e-35 151.0 157 55.4
TAR376G0592 Trochodendron aralioides HOM05D001003 ORTHO05D002734 7.7e-35 151.0 154 55.8
vmacro21780 Vaccinium macrocarpon HOM05D001003 ORTHO05D002734 1.3e-34 150.2 158 56.3
VMungo1309G2428 Vigna mungo HOM05D001003 ORTHO05D002734 1.3e-34 150.2 155 55.5
PSO541G3668 Papaver somniferum HOM05D001003 ORTHO05D002734 2.2e-34 149.4 154 58.4
PSO675G5204 Papaver somniferum HOM05D001003 ORTHO05D002734 2.2e-34 149.4 154 57.8
RcHm_v2.0_Chr7g0216301 Rosa chinensis HOM05D001003 ORTHO05D002734 2.9e-34 149.1 154 59.1
Aqoxy6G01568 Aquilegia oxysepala HOM05D001003 ORTHO05D002734 1.1e-33 147.1 157 53.5
AUR62042590 Chenopodium quinoa HOM05D001003 ORTHO05D002734 1.1e-33 147.1 156 54.5
SalBow7G0783 Salvia bowleyana HOM05D001003 ORTHO05D002734 4.2e-33 145.2 160 58.1
Phvul.009G006900 Phaseolus vulgaris HOM05D001003 ORTHO05D002734 7.2e-33 144.4 155 54.8
TPR.G38087 Trifolium pratense HOM05D001003 ORTHO05D002734 1.2e-32 143.7 154 52.6
Dinv31975 Davidia involucrata HOM05D001003 ORTHO05D002734 2.7e-32 142.5 113 65.5
FvH4_5g25830 Fragaria vesca HOM05D001003 ORTHO05D002734 4.0e-31 138.7 154 56.5
EL10Ac1g01898 Beta vulgaris HOM05D001003 ORTHO05D002734 6.7e-31 137.9 157 51.6
FAN08G2256 Fragaria x ananassa HOM05D001003 ORTHO05D002734 1.5e-30 136.7 155 55.5
Medtr3g115950 Medicago truncatula HOM05D001003 ORTHO05D002734 3.3e-30 135.6 154 50.6
Psat5g010240 Pisum sativum HOM05D001003 ORTHO05D002734 1.7e-29 133.3 155 51.0
Lalb_Chr23g0265621 Lupinus albus HOM05D001003 ORTHO05D002734 2.2e-29 132.9 147 53.7
FAN04G2574 Fragaria x ananassa HOM05D001003 ORTHO05D002734 2.8e-29 132.5 155 54.2
DCAR_013935 Daucus carota HOM05D001003 ORTHO05D002734 4.8e-29 131.7 149 53.7
FAN13G3154 Fragaria x ananassa HOM05D001003 ORTHO05D002734 1.4e-28 130.2 155 54.2
Glyma.04G015600 Glycine max HOM05D001003 ORTHO05D002734 1.4e-28 130.2 157 52.9
Lalb_Chr11g0061441 Lupinus albus HOM05D001003 ORTHO05D002734 1.2e-27 127.1 149 50.3
Hund05087 Selenicereus undatus HOM05D001003 ORTHO05D002734 2.0e-27 126.3 158 49.4
Ah.11g041870 Amaranthus hybridus HOM05D001003 ORTHO05D002734 3.5e-27 125.6 173 48.0
CANSAT56G4325 Cannabis sativa HOM05D001003 ORTHO05D002734 5.0e-26 121.7 165 50.9
unitig_26.g9879 Utricularia gibba HOM05D001003 ORTHO05D002734 5.0e-26 121.7 157 53.5
Sc26g0004690 Simmondsia chinensis HOM05D001003 ORTHO05D002734 2.5e-25 119.4 144 50.7
THA.LOC104813179 Tarenaya hassleriana HOM05D001003 ORTHO05D002734 2.5e-25 119.4 152 48.7
ECA232G4159 Erigeron canadensis HOM05D001003 ORTHO05D002734 3.2e-25 119.0 146 54.8
HanXRQChr15g0492521 Helianthus annuus HOM05D001003 ORTHO05D002734 1.2e-24 117.1 148 54.1
HanXRQChr05g0144781 Helianthus annuus HOM05D001003 ORTHO05D002734 1.4e-23 113.6 147 51.0
MBI08_g29082_MAGBIO Magnolia biondii HOM05D001003 ORTHO05D002734 3.0e-23 112.5 155 46.5
Os04g0585100 Oryza sativa ssp. japonica HOM05D001003 ORTHO05D002734 9.8e-22 107.5 144 45.8
SGA_v2.0_scaffold133G34592 Striga asiatica HOM05D001003 ORTHO05D002734 2.8e-21 105.9 113 50.4
Ca_15394_v3 Cicer arietinum L. HOM05D001003 ORTHO05D002734 3.1e-20 102.4 133 48.1
Migut.C00373 Erythranthe guttata HOM05D001003 ORTHO05D002734 1.3e-18 97.1 150 48.0
HanXRQChr14g0427891 Helianthus annuus HOM05D001003 ORTHO05D002734 5.0e-18 95.1 159 40.3
Zm00001eb072740 Zea mays HOM05D001003 ORTHO05D002734 1.5e-17 93.6 145 42.8
Lsat_1_v5_gn_2_421 Lactuca sativa HOM05D001003 ORTHO05D002734 6.1e-16 88.2 167 38.9
Thhalv10016452m.g Eutrema salsugineum HOM05D001003 ORTHO05D002734 4.0e-15 85.5 143 42.7
Sp4g16000 Schrenkiella parvula HOM05D001003 ORTHO05D002734 1.2e-14 84.0 153 40.5
Lsat_1_v5_gn_9_41841 Lactuca sativa HOM05D001003 ORTHO05D002734 3.4e-14 82.4 106 49.1
BcaC02g07808 Brassica carinata HOM05D001003 ORTHO05D002734 7.5e-14 81.3 152 42.1
C04p63160 Brassica napus HOM05D001003 ORTHO05D002734 7.5e-14 81.3 152 42.1
BolC4t27788H Brassica oleracea HOM05D001003 ORTHO05D002734 7.5e-14 81.3 152 42.1
AL4G29310 Arabidopsis lyrata HOM05D001003 ORTHO05D002734 1.3e-13 80.5 142 40.8
AT2G33640 Arabidopsis thaliana HOM05D001003 ORTHO05D002734 3.7e-13 79.0 142 40.1
BcaB06g28708 Brassica carinata HOM05D001003 ORTHO05D002734 3.7e-13 79.0 149 40.9
ECA238G1323 Erigeron canadensis HOM05D000190 ORTHO05D002734 3.7e-13 79.0 155 41.9
Carub.0004s1527 Capsella rubella HOM05D001003 ORTHO05D002734 4.1e-12 75.5 142 39.4
A04p25890 Brassica napus HOM05D001003 ORTHO05D002734 1.6e-11 73.6 153 39.9
BraA04t18091Z Brassica rapa HOM05D001003 ORTHO05D002734 2.0e-11 73.2 153 40.5
CARHR127650 Cardamine hirsuta HOM05D001003 ORTHO05D002734 6.1e-08 61.6 149 37.6
Atru.chr13.86 Acer truncatum HOM05D001003 ORTHO05D002734 2.0e-06 56.6 56 51.8


User provided reference genes

Program Settings