Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc257.7 Carica papaya HOM05D004203 ORTHO05D004830 5.9e-255 883.6 429 100.0
Potri.007G001200 Populus trichocarpa HOM05D004203 ORTHO05D004830 3.9e-206 721.5 432 80.1
CiPaw.15G000900 Carya illinoinensis HOM05D004203 ORTHO05D004830 9.6e-205 716.8 429 78.1
Thecc.02G153000 Theobroma cacao HOM05D004203 ORTHO05D004830 1.3e-204 716.5 429 79.5
COL.COLO4_33135 Corchorus olitorius HOM05D004203 ORTHO05D004830 1.3e-201 706.4 429 77.4
TWI74G0727 Tripterygium wilfordii HOM05D004203 ORTHO05D004830 1.7e-201 706.1 421 78.1
Manes.04G161600 Manihot esculenta HOM05D004203 ORTHO05D004830 2.2e-201 705.7 419 79.0
Sabra07G0000900 Salix brachista HOM05D004203 ORTHO05D004830 3.8e-201 704.9 431 77.5
Duzib132G1212 Durio zibethinus HOM05D004203 ORTHO05D004830 9.3e-200 700.3 429 76.2
Atru.chr11.55 Acer truncatum HOM05D004203 ORTHO05D004830 1.2e-199 699.9 417 79.1
Haze_17403 Corylus avellana HOM05D004203 ORTHO05D004830 1.0e-198 696.8 431 78.0
Duzib248G1608 Durio zibethinus HOM05D004203 ORTHO05D004830 1.3e-198 696.4 428 78.5
Peaxi162Scf00603g00031 Petunia axillaris HOM05D004203 ORTHO05D004830 1.3e-198 696.4 430 77.7
QL01p000433 Quercus lobata HOM05D004203 ORTHO05D004830 1.8e-198 696.0 428 77.8
Aqoxy3G04325 Aquilegia oxysepala HOM05D004203 ORTHO05D004830 2.3e-198 695.7 434 77.0
TAR623G0552 Trochodendron aralioides HOM05D004203 ORTHO05D004830 3.0e-198 695.3 429 77.6
Actinidia13679 Actinidia chinensis HOM05D004203 ORTHO05D004830 1.6e-196 689.5 425 77.2
Cfa018675 Carpinus fangiana HOM05D004203 ORTHO05D004830 2.8e-196 688.7 412 80.1
Gorai.013G067000 Gossypium raimondii HOM05D004203 ORTHO05D004830 1.8e-195 686.0 434 74.4
Gohir.D13G059200 Gossypium hirsutum HOM05D004203 ORTHO05D004830 5.3e-195 684.5 434 74.2
Gohir.A13G062700 Gossypium hirsutum HOM05D004203 ORTHO05D004830 1.5e-194 682.9 434 74.2
DCAR_026874 Daucus carota HOM05D004203 ORTHO05D004830 2.0e-194 682.6 428 74.8
Atru.chr11.58 Acer truncatum HOM05D004203 ORTHO05D004830 1.0e-193 680.2 409 78.2
THA.LOC104826512 Tarenaya hassleriana HOM05D004203 ORTHO05D004830 2.9e-193 678.7 413 76.0
Ciclev10015311m.g Citrus clementina HOM05D004203 ORTHO05D004830 3.8e-193 678.3 430 74.7
PGSC0003DMG400000979 Solanum tuberosum HOM05D004203 ORTHO05D004830 4.9e-193 677.9 431 74.2
ClCG01G007960 Citrullus lanatus HOM05D004203 ORTHO05D004830 2.5e-192 675.6 429 74.1
Nitab4.5_0001803g0070 Nicotiana tabacum HOM05D004203 ORTHO05D004830 1.6e-191 672.9 417 76.5
Oeu027932.1 Olea europaea HOM05D004203 ORTHO05D004830 1.3e-190 669.8 430 74.0
Sopen11g002260 Solanum pennellii HOM05D004203 ORTHO05D004830 1.8e-190 669.5 430 74.4
Aa31LG8G6770 Aethionema arabicum HOM05D004203 ORTHO05D004830 2.3e-190 669.1 415 75.9
AT3G19990 Arabidopsis thaliana HOM05D004203 ORTHO05D004830 2.3e-190 669.1 432 74.1
Nitab4.5_0001018g0120 Nicotiana tabacum HOM05D004203 ORTHO05D004830 5.1e-190 667.9 417 76.0
PSO063G7450 Papaver somniferum HOM05D004203 ORTHO05D004830 5.1e-190 667.9 431 74.2
Carub.0003s1989 Capsella rubella HOM05D004203 ORTHO05D004830 8.7e-190 667.2 432 74.1
Hma1.2p1_0513F.1_g169570 Hydrangea macrophylla HOM05D004203 ORTHO05D004830 1.1e-189 666.8 417 74.8
CANSAT78G1232 Cannabis sativa HOM05D004203 ORTHO05D004830 1.5e-189 666.4 432 74.3
PSO782G5227 Papaver somniferum HOM05D004203 ORTHO05D004830 1.5e-189 666.4 430 73.5
CAN.G143.62 Capsicum annuum HOM05D004203 ORTHO05D004830 5.7e-189 664.5 429 74.1
CSS0042488 Camellia sinensis var. sinensis HOM05D004203 ORTHO05D004830 9.7e-189 663.7 428 73.8
AL3G33640 Arabidopsis lyrata HOM05D004203 ORTHO05D004830 1.3e-188 663.3 432 73.6
Thhalv10020793m.g Eutrema salsugineum HOM05D004203 ORTHO05D004830 2.8e-188 662.1 432 72.7
EL10Ac9g23011 Beta vulgaris HOM05D004203 ORTHO05D004830 4.1e-187 658.3 415 74.2
Cc11_g04600 Coffea canephora HOM05D004203 ORTHO05D004830 6.9e-187 657.5 431 72.6
Lalb_Chr17g0337651 Lupinus albus HOM05D004203 ORTHO05D004830 6.9e-187 657.5 434 73.7
BraA05t21796Z Brassica rapa HOM05D004203 ORTHO05D004830 1.2e-186 656.8 414 74.4
Sp3g18010 Schrenkiella parvula HOM05D004203 ORTHO05D004830 3.4e-186 655.2 432 72.7
Dinv37943 Davidia involucrata HOM05D004203 ORTHO05D004830 4.5e-186 654.8 418 76.8
MD13G1001600 Malus domestica HOM05D004203 ORTHO05D004830 4.5e-186 654.8 450 70.2
A05p29130 Brassica napus HOM05D004203 ORTHO05D004830 5.9e-186 654.4 414 73.9
CARHR095520 Cardamine hirsuta HOM05D004203 ORTHO05D004830 5.9e-186 654.4 432 72.7
BcaB04g20673 Brassica carinata HOM05D004203 ORTHO05D004830 5.0e-185 651.4 421 73.6
Lsat_1_v5_gn_3_35621 Lactuca sativa HOM05D004203 ORTHO05D004830 1.1e-184 650.2 431 73.5
BcaB06g26068 Brassica carinata HOM05D004203 ORTHO05D004830 4.2e-184 648.3 414 73.7
C01p44100 Brassica napus HOM05D004203 ORTHO05D004830 4.2e-184 648.3 433 72.1
BraA01t03555Z Brassica rapa HOM05D004203 ORTHO05D004830 4.2e-184 648.3 421 73.2
MELO3C005084.2 Cucumis melo HOM05D004203 ORTHO05D004830 4.2e-184 648.3 429 70.6
CsaV3_5G021930 Cucumis sativus L. HOM05D004203 ORTHO05D004830 7.2e-184 647.5 429 71.1
BcaC09g48955 Brassica carinata HOM05D004203 ORTHO05D004830 9.4e-184 647.1 433 71.8
AUR62032903 Chenopodium quinoa HOM05D004203 ORTHO05D004830 1.6e-183 646.4 420 70.7
PGR142G4147 Punica granatum HOM05D004203 ORTHO05D004830 2.1e-183 646.0 436 72.7
Cc11_g04630 Coffea canephora HOM05D004203 ORTHO05D004830 2.7e-183 645.6 431 71.0
BolC1t04373H Brassica oleracea HOM05D004203 ORTHO05D004830 3.6e-183 645.2 433 71.8
VMungo0900G0001 Vigna mungo HOM05D004203 ORTHO05D004830 6.1e-183 644.4 414 74.4
BcaC05g28375 Brassica carinata HOM05D004203 ORTHO05D004830 7.9e-183 644.0 414 73.4
BolC5t33177H Brassica oleracea HOM05D004203 ORTHO05D004830 7.9e-183 644.0 414 73.4
A01p34680 Brassica napus HOM05D004203 ORTHO05D004830 6.7e-182 641.0 421 72.2
Eucgr.G02607 Eucalyptus grandis HOM05D004203 ORTHO05D004830 1.1e-181 640.2 434 70.5
Prupe.1G350900 Prunus persica HOM05D004203 ORTHO05D004830 1.5e-181 639.8 462 68.6
HanXRQChr15g0472171 Helianthus annuus HOM05D004203 ORTHO05D004830 2.5e-181 639.0 435 70.6
Hund24393 Selenicereus undatus HOM05D004203 ORTHO05D004830 4.8e-180 634.8 421 71.3
ClCG01G007980 Citrullus lanatus HOM05D004203 ORTHO05D004830 8.2e-180 634.0 427 68.9
MBI06_g12559_MAGBIO Magnolia biondii HOM05D004203 ORTHO05D004830 1.4e-179 633.3 429 72.0
CDE04G2894 Ceratophyllum demersum HOM05D004203 ORTHO05D004830 2.0e-178 629.4 424 70.5
Phvul.003G000800 Phaseolus vulgaris HOM05D004203 ORTHO05D004830 3.4e-178 628.6 414 72.2
Rhsim02G0210900 Rhododendron simsii HOM05D004203 ORTHO05D004830 1.0e-177 627.1 437 69.6
AUR62017749 Chenopodium quinoa HOM05D004203 ORTHO05D004830 1.7e-177 626.3 409 69.7
Eucgr.G02598 Eucalyptus grandis HOM05D004203 ORTHO05D004830 2.9e-177 625.5 418 70.3
Eucgr.L03404 Eucalyptus grandis HOM05D004203 ORTHO05D004830 2.9e-177 625.5 418 70.6
Medtr0365s0010 Medicago truncatula HOM05D004203 ORTHO05D004830 1.1e-176 623.6 431 68.9
Sed0024681 Sechium edule HOM05D004203 ORTHO05D004830 1.4e-176 623.2 421 69.4
RcHm_v2.0_Chr4g0447121 Rosa chinensis HOM05D004203 ORTHO05D004830 4.2e-176 621.7 411 73.2
Glyma.09G285700 Glycine max HOM05D004203 ORTHO05D004830 9.4e-176 620.5 430 70.7
Gohir.D13G059100 Gossypium hirsutum HOM05D004203 ORTHO05D004830 3.9e-174 615.1 422 67.1
Gorai.013G066900 Gossypium raimondii HOM05D004203 ORTHO05D004830 2.6e-173 612.5 422 66.6
Psat6g100840 Pisum sativum HOM05D004203 ORTHO05D004830 3.3e-173 612.1 424 67.7
Lj2g0024262 Lotus japonicus HOM05D004203 ORTHO05D004830 5.7e-173 611.3 429 69.7
ECA246G1911 Erigeron canadensis HOM05D004203 ORTHO05D004830 1.7e-172 609.8 419 70.6
FvH4_4g37300 Fragaria vesca HOM05D004203 ORTHO05D004830 3.7e-172 608.6 411 70.8
Ca_12360_v3 Cicer arietinum L. HOM05D004203 ORTHO05D004830 4.8e-172 608.2 427 68.4
Ca_12363_v3 Cicer arietinum L. HOM05D004203 ORTHO05D004830 4.8e-172 608.2 427 68.4
SHI10741 Sapria himalayana HOM05D004203 ORTHO05D004830 1.1e-171 607.1 402 69.9
ECA246G0515 Erigeron canadensis HOM05D004203 ORTHO05D004830 2.0e-170 602.8 431 68.4
Migut.O00611 Erythranthe guttata HOM05D004203 ORTHO05D004830 1.0e-169 600.5 415 68.9
SalBow2G2162 Salvia bowleyana HOM05D004203 ORTHO05D004830 1.7e-169 599.7 419 68.5
Migut.L00789 Erythranthe guttata HOM05D004203 ORTHO05D004830 2.9e-169 599.0 437 66.4
MSTRG.8095 Avicennia marina HOM05D004203 ORTHO05D004830 1.1e-168 597.0 412 70.1
QL01p000454 Quercus lobata HOM05D004203 ORTHO05D004830 3.2e-168 595.5 429 68.3
FAN17G0196 Fragaria x ananassa HOM05D004203 ORTHO05D004830 1.2e-167 593.6 411 69.3
C05p44530 Brassica napus HOM05D004203 ORTHO05D004830 8.0e-167 590.9 414 68.8
Eucgr.G02596 Eucalyptus grandis HOM05D004203 ORTHO05D004830 1.3e-164 583.6 433 66.3
Lsat_1_v5_gn_4_27720 Lactuca sativa HOM05D004203 ORTHO05D004830 2.8e-164 582.4 434 64.3
Eucgr.G02594 Eucalyptus grandis HOM05D004203 ORTHO05D004830 6.5e-161 571.2 435 63.0
ECA234G3608 Erigeron canadensis HOM05D004203 ORTHO05D004830 2.1e-159 566.2 433 62.1
unitig_749.g13343 Utricularia gibba HOM05D004203 ORTHO05D004830 1.1e-155 553.9 414 64.7
HPP92_022176 Vanilla planifolia HOM05D004203 ORTHO05D004830 1.4e-155 553.5 420 61.7
QL01p000540 Quercus lobata HOM05D004203 ORTHO05D004830 7.0e-155 551.2 354 75.1
Eucgr.G02595 Eucalyptus grandis HOM05D004203 ORTHO05D004830 9.1e-155 550.8 436 60.8
Lsat_1_v5_gn_8_139521 Lactuca sativa HOM05D004203 ORTHO05D004830 2.2e-153 546.2 430 58.6
HanXRQChr17g0559591 Helianthus annuus HOM05D004203 ORTHO05D004830 1.5e-152 543.5 430 57.4
ATR0124G027 Amborella trichopoda HOM05D004203 ORTHO05D004830 6.1e-151 538.1 421 61.8
HanXRQChr09g0251301 Helianthus annuus HOM05D004203 ORTHO05D004830 1.3e-148 530.4 430 56.0
Os02g0828200 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 1.7e-148 530.0 411 61.3
SEGI_02027 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 2.2e-148 529.6 446 58.3
Zm00001eb259360 Zea mays HOM05D004203 ORTHO05D004830 1.1e-147 527.3 410 62.0
HPP92_005409 Vanilla planifolia HOM05D004203 ORTHO05D004830 9.1e-147 524.2 434 61.3
Os02g0828500 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 5.4e-139 498.4 421 56.5
ECA233G1072 Erigeron canadensis HOM05D004203 ORTHO05D004830 4.5e-138 495.4 394 58.9
MD16G1004500 Malus domestica HOM05D004203 ORTHO05D004830 1.7e-129 466.8 405 58.5
Thecc.02G152900 Theobroma cacao HOM05D004203 ORTHO05D004830 4.7e-127 458.8 295 71.9
AagrBONN_evm.TU.Sc2ySwM_368.1197 Anthoceros agrestis HOM05D004203 ORTHO05D004830 3.2e-123 446.0 430 51.4
TPR.G34239 Trifolium pratense HOM05D004203 ORTHO05D004830 3.2e-123 446.0 308 69.5
SMO117G0084 Selaginella moellendorffii HOM05D004203 ORTHO05D004830 1.9e-115 420.2 410 51.2
GSVIVG01034366001 Vitis vinifera HOM05D004203 ORTHO05D004830 3.3e-112 409.5 429 51.3
GSVIVG01034368001 Vitis vinifera HOM05D004203 ORTHO05D004830 1.1e-110 404.4 429 50.8
Mapoly0080s0012 Marchantia polymorpha HOM05D004203 ORTHO05D004830 1.4e-110 404.1 413 47.9
Pp3c17_21640 Physcomitrium patens HOM05D004203 ORTHO05D004830 2.0e-109 400.2 410 47.1
Sc08g0004160 Simmondsia chinensis HOM05D004203 ORTHO05D004830 4.4e-109 399.1 259 69.9
SEGI_01054 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 2.8e-103 379.8 345 53.3
Cre16.g671500 Chlamydomonas reinhardtii HOM05D004203 ORTHO05D004830 2.6e-93 346.7 422 41.7
Prupe.1G351100 Prunus persica HOM05D004203 ORTHO05D004830 3.8e-92 342.8 240 70.0
Medtr0400s0020 Medicago truncatula HOM05D004203 ORTHO05D004830 7.9e-90 335.1 226 70.4
Lj3A845T90 Lonicera japonica HOM05D004203 ORTHO05D004830 8.7e-89 331.6 263 65.4
SEGI_32381 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 1.0e-81 308.1 289 52.9
Lj3C845T9 Lonicera japonica HOM05D004203 ORTHO05D004830 8.8e-65 251.9 155 75.5
Atru.chr11.60 Acer truncatum HOM05D004203 ORTHO05D004830 9.1e-54 215.3 157 63.1
Sc08g0004150 Simmondsia chinensis HOM05D004203 ORTHO05D004830 3.5e-53 213.4 138 69.6
SEGI_16211 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 1.1e-51 208.4 318 38.7
Sc08g0004170 Simmondsia chinensis HOM05D004203 ORTHO05D004830 2.3e-49 200.7 131 68.7
Solyc11g006360.1 Solanum lycopersicum HOM05D004203 ORTHO05D004830 5.2e-49 199.5 113 79.6
BcaB08g37041 Brassica carinata HOM05D004203 ORTHO05D004830 1.3e-47 194.9 146 66.4
Atru.chr11.61 Acer truncatum HOM05D004203 ORTHO05D004830 3.7e-39 166.8 126 67.5
BcaB06g27490 Brassica carinata HOM05D004203 ORTHO05D004830 3.7e-39 166.8 145 61.4
SEGI_00877 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 1.2e-37 161.8 210 47.6
FAN12G3670 Fragaria x ananassa HOM05D004203 ORTHO05D004830 7.7e-37 159.1 159 56.0
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 8.5e-36 155.6 405 26.4
BcaC07g39871 Brassica carinata HOM05D004203 ORTHO05D004830 4.4e-24 116.7 79 73.4
BcaB06g27488 Brassica carinata HOM05D004203 ORTHO05D004830 5.7e-24 116.3 89 64.0
BcaB06g27492 Brassica carinata HOM05D004203 ORTHO05D004830 9.8e-24 115.5 92 64.1
BcaB06g26576 Brassica carinata HOM05D004203 ORTHO05D004830 1.1e-22 112.1 78 67.9
Sc08g0004180 Simmondsia chinensis HOM05D004203 ORTHO05D004830 6.6e-20 102.8 67 70.1
BcaB08g37040 Brassica carinata HOM05D004203 ORTHO05D004830 1.9e-19 101.3 67 73.1
Os03g0251425 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 9.5e-19 99.0 90 53.3
Sc08g0004140 Simmondsia chinensis HOM05D004203 ORTHO05D004830 2.8e-18 97.4 83 56.6
BcaB06g27494 Brassica carinata HOM05D004203 ORTHO05D004830 1.5e-16 91.7 74 59.5
SEGI_08354 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 4.4e-16 90.1 68 55.9
BcaB06g27495 Brassica carinata HOM05D004203 ORTHO05D004830 2.2e-15 87.8 60 71.7
COL.COLO4_33125 Corchorus olitorius HOM05D004203 ORTHO05D004830 4.9e-15 86.7 57 68.4
GSVIVG01034364001 Vitis vinifera HOM05D004203 ORTHO05D004830 3.2e-14 84.0 61 63.9
MCO08G255 Micromonas commoda HOM05D004203 ORTHO05D004830 7.3e-11 72.8 131 33.6
BcaB06g26577 Brassica carinata HOM05D004203 ORTHO05D004830 2.8e-10 70.9 55 69.1
BcaC07g38231 Brassica carinata HOM05D004203 ORTHO05D004830 6.2e-10 69.7 59 67.8
BcaB05g24942 Brassica carinata HOM05D004203 ORTHO05D004830 1.2e-08 65.5 40 70.0
Cpa.g.c45316 Carica papaya HOM05D004203 ORTHO05D004830 1.2e-08 65.5 43 69.8
Pp3c14_4390 Physcomitrium patens HOM05D004203 ORTHO05D004830 8.3e-07 59.3 72 33.3
A05p19690 Brassica napus HOM05D004203 ORTHO05D004830 1.9e-06 58.2 52 63.5


User provided reference genes

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