Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc257.3 Carica papaya HOM05D004394 ORTHO05D005208 5.1e-60 234.2 116 100.0
Cpa.g.sc53.145 Carica papaya HOM05D004394 ORTHO05D005208 5.7e-35 151.0 123 65.9
Cpa.g.sc247.5 Carica papaya HOM05D004394 ORTHO05D005208 2.8e-34 148.7 122 64.8
Cpa.g.sc36.132 Carica papaya HOM05D004394 ORTHO05D005208 3.7e-34 148.3 123 64.2
Atru.chr5.2725 Acer truncatum HOM05D004394 ORTHO05D005208 1.1e-30 136.7 123 59.3
Prupe.1G517100 Prunus persica HOM05D004394 ORTHO05D005208 1.5e-30 136.3 123 61.0
Ciclev10003351m.g Citrus clementina HOM05D004394 ORTHO05D005208 5.5e-30 134.4 123 58.5
Atru.chr13.1186 Acer truncatum HOM05D004394 ORTHO05D005208 1.6e-29 132.9 123 57.7
Oeu046302.1 Olea europaea HOM05D004394 ORTHO05D005208 1.6e-29 132.9 123 60.2
Potri.002G096600 Populus trichocarpa HOM05D004394 ORTHO05D005208 2.1e-29 132.5 123 59.3
Thecc.08G106700 Theobroma cacao HOM05D004394 ORTHO05D005208 2.1e-29 132.5 124 59.7
Duzib041G0085 Durio zibethinus HOM05D004394 ORTHO05D005208 2.7e-29 132.1 124 60.5
FAN08G2022 Fragaria x ananassa HOM05D004394 ORTHO05D005208 3.6e-29 131.7 123 57.7
FAN13G1242 Fragaria x ananassa HOM05D004394 ORTHO05D005208 3.6e-29 131.7 123 57.7
Manes.08G094000 Manihot esculenta HOM05D004394 ORTHO05D005208 3.6e-29 131.7 123 61.0
SGA_v2.0_scaffold24G10492 Striga asiatica HOM05D004394 ORTHO05D005208 3.6e-29 131.7 123 59.3
QL12p036785 Quercus lobata HOM05D004394 ORTHO05D005208 4.7e-29 131.3 123 58.5
Sabra02G0076100 Salix brachista HOM05D004394 ORTHO05D005208 4.7e-29 131.3 123 58.5
Aqoxy6G00782 Aquilegia oxysepala HOM05D004394 ORTHO05D005208 6.1e-29 131.0 123 57.7
Cfa013636 Carpinus fangiana HOM05D004394 ORTHO05D005208 6.1e-29 131.0 123 57.7
MD08G1182900 Malus domestica HOM05D004394 ORTHO05D005208 6.1e-29 131.0 123 58.5
Oeu012929.1 Olea europaea HOM05D004394 ORTHO05D005208 8.0e-29 130.6 123 59.3
QL03p027611 Quercus lobata HOM05D004394 ORTHO05D005208 1.0e-28 130.2 123 56.9
Haze_22268 Corylus avellana HOM05D004394 ORTHO05D005208 1.4e-28 129.8 123 57.7
Nn2g12152 Nelumbo nucifera HOM05D004394 ORTHO05D005208 1.4e-28 129.8 123 56.9
Migut.C01173 Erythranthe guttata HOM05D004394 ORTHO05D005208 1.8e-28 129.4 123 57.7
FvH4_5g37330 Fragaria vesca HOM05D004394 ORTHO05D005208 3.0e-28 128.6 123 56.9
FAN18G2812 Fragaria x ananassa HOM05D004394 ORTHO05D005208 3.0e-28 128.6 123 56.9
RcHm_v2.0_Chr7g0238971 Rosa chinensis HOM05D004394 ORTHO05D005208 3.0e-28 128.6 123 58.5
Eucgr.D01128 Eucalyptus grandis HOM05D004394 ORTHO05D005208 5.2e-28 127.9 123 56.9
MELO3C011026.2 Cucumis melo HOM05D004394 ORTHO05D005208 6.7e-28 127.5 123 55.3
Gohir.A06G035600 Gossypium hirsutum HOM05D004394 ORTHO05D005208 6.7e-28 127.5 124 58.1
Gohir.D06G036200 Gossypium hirsutum HOM05D004394 ORTHO05D005208 6.7e-28 127.5 124 58.1
Gorai.010G040200 Gossypium raimondii HOM05D004394 ORTHO05D005208 6.7e-28 127.5 124 58.1
Nn5g30107 Nelumbo nucifera HOM05D004394 ORTHO05D005208 6.7e-28 127.5 123 55.3
TAR376G0181 Trochodendron aralioides HOM05D004394 ORTHO05D005208 6.7e-28 127.5 123 55.3
ClCG08G011100 Citrullus lanatus HOM05D004394 ORTHO05D005208 8.8e-28 127.1 123 55.3
HanXRQChr04g0126451 Helianthus annuus HOM05D004394 ORTHO05D005208 8.8e-28 127.1 123 54.5
HanXRQChr07g0194691 Helianthus annuus HOM05D004394 ORTHO05D005208 8.8e-28 127.1 123 54.5
Lsat_1_v5_gn_2_108521 Lactuca sativa HOM05D004394 ORTHO05D005208 8.8e-28 127.1 123 55.3
Dinv36547 Davidia involucrata HOM05D004394 ORTHO05D005208 1.1e-27 126.7 124 54.8
Duzib093G0332 Durio zibethinus HOM05D004394 ORTHO05D005208 1.5e-27 126.3 124 57.3
MBI05_g37052_MAGBIO Magnolia biondii HOM05D004394 ORTHO05D005208 1.5e-27 126.3 123 55.3
CsaV3_2G029680 Cucumis sativus L. HOM05D004394 ORTHO05D005208 2.0e-27 125.9 123 55.3
Lalb_Chr08g0242051 Lupinus albus HOM05D004394 ORTHO05D005208 2.0e-27 125.9 123 56.1
Potri.005G165000 Populus trichocarpa HOM05D004394 ORTHO05D005208 2.0e-27 125.9 123 55.3
TWI12G1259 Tripterygium wilfordii HOM05D004394 ORTHO05D005208 2.0e-27 125.9 123 56.9
Ca_20267_v3 Cicer arietinum L. HOM05D004394 ORTHO05D005208 2.6e-27 125.6 123 56.1
Peaxi162Scf00041g00179 Petunia axillaris HOM05D004394 ORTHO05D005208 2.6e-27 125.6 123 56.1
DCAR_008736 Daucus carota HOM05D004394 ORTHO05D005208 3.3e-27 125.2 123 53.7
Duzib093G1861 Durio zibethinus HOM05D004394 ORTHO05D005208 3.3e-27 125.2 124 56.5
PSO781G0205 Papaver somniferum HOM05D004394 ORTHO05D005208 3.3e-27 125.2 123 56.9
Psat2g179880 Pisum sativum HOM05D004394 ORTHO05D005208 4.4e-27 124.8 123 56.1
SalBow7G3516 Salvia bowleyana HOM05D004394 ORTHO05D005208 4.4e-27 124.8 123 55.3
TAR628G0041 Trochodendron aralioides HOM05D004394 ORTHO05D005208 4.4e-27 124.8 123 53.7
GSVIVG01032524001 Vitis vinifera HOM05D004394 ORTHO05D005208 4.4e-27 124.8 123 55.3
Actinidia30773 Actinidia chinensis HOM05D004394 ORTHO05D005208 5.7e-27 124.4 123 55.3
Phvul.007G087400 Phaseolus vulgaris HOM05D004394 ORTHO05D005208 7.4e-27 124.0 123 55.3
SalBow7G2639 Salvia bowleyana HOM05D004394 ORTHO05D005208 7.4e-27 124.0 123 55.3
THA.LOC104800150 Tarenaya hassleriana HOM05D004394 ORTHO05D005208 7.4e-27 124.0 124 56.5
MSTRG.25920 Avicennia marina HOM05D004394 ORTHO05D005208 9.7e-27 123.6 123 55.3
ECA238G4620 Erigeron canadensis HOM05D004394 ORTHO05D005208 9.7e-27 123.6 123 54.5
Hma1.2p1_0575F.1_g181580 Hydrangea macrophylla HOM05D004394 ORTHO05D005208 9.7e-27 123.6 116 58.6
Lj2g0026973 Lotus japonicus HOM05D004394 ORTHO05D005208 9.7e-27 123.6 123 56.1
Sc01g0000460 Simmondsia chinensis HOM05D004394 ORTHO05D005208 9.7e-27 123.6 123 53.7
VMungo0720G0524 Vigna mungo HOM05D004394 ORTHO05D005208 9.7e-27 123.6 124 54.8
Ca_08121_v3 Cicer arietinum L. HOM05D004394 ORTHO05D005208 1.3e-26 123.2 123 55.3
Glyma.20G173300 Glycine max HOM05D004394 ORTHO05D005208 1.3e-26 123.2 123 55.3
Medtr2g028730 Medicago truncatula HOM05D004394 ORTHO05D005208 1.3e-26 123.2 123 55.3
Nitab4.5_0000232g0200 Nicotiana tabacum HOM05D004394 ORTHO05D005208 1.3e-26 123.2 123 55.3
PSO541G5821 Papaver somniferum HOM05D004394 ORTHO05D005208 1.3e-26 123.2 123 56.1
Sabra05G0124400 Salix brachista HOM05D004394 ORTHO05D005208 1.7e-26 122.9 126 54.0
AT1G78190 Arabidopsis thaliana HOM05D004394 ORTHO05D005208 2.2e-26 122.5 124 54.8
MD15G1369300 Malus domestica HOM05D004394 ORTHO05D005208 2.8e-26 122.1 116 58.6
PGR042G0728 Punica granatum HOM05D004394 ORTHO05D005208 2.8e-26 122.1 123 53.7
TWI36G1364 Tripterygium wilfordii HOM05D004394 ORTHO05D005208 2.8e-26 122.1 123 52.8
unitig_899.g14554 Utricularia gibba HOM05D000298 ORTHO05D000553 2.8e-26 122.1 123 53.7
BcaB07g32248 Brassica carinata HOM05D004394 ORTHO05D005208 3.7e-26 121.7 129 51.9
CSS0017732 Camellia sinensis var. sinensis HOM05D004394 ORTHO05D005208 3.7e-26 121.7 123 53.7
CDE02G1736 Ceratophyllum demersum HOM05D004394 ORTHO05D005208 3.7e-26 121.7 123 55.3
Gohir.A05G267200 Gossypium hirsutum HOM05D004394 ORTHO05D005208 3.7e-26 121.7 124 56.5
Lalb_Chr11g0065431 Lupinus albus HOM05D004394 ORTHO05D005208 3.7e-26 121.7 123 56.1
Actinidia10324 Actinidia chinensis HOM05D004394 ORTHO05D005208 4.8e-26 121.3 122 54.9
BraA07t29204Z Brassica rapa HOM05D004394 ORTHO05D005208 4.8e-26 121.3 125 53.6
CANSAT80G0901 Cannabis sativa HOM05D004394 ORTHO05D005208 4.8e-26 121.3 123 53.7
CDE06G0322 Ceratophyllum demersum HOM05D004394 ORTHO05D005208 4.8e-26 121.3 123 55.3
Cc10_g07190 Coffea canephora HOM05D004394 ORTHO05D005208 4.8e-26 121.3 123 55.3
Psat1g170200 Pisum sativum HOM05D004394 ORTHO05D005208 4.8e-26 121.3 123 54.5
TPR.G17517 Trifolium pratense HOM05D004394 ORTHO05D005208 4.8e-26 121.3 123 54.5
CAN.G101.27 Capsicum annuum HOM05D004394 ORTHO05D005208 6.3e-26 120.9 123 53.7
TPR.G10620 Trifolium pratense HOM05D004394 ORTHO05D005208 6.3e-26 120.9 123 54.5
A09p42510 Brassica napus HOM05D004394 ORTHO05D005208 8.2e-26 120.6 127 52.0
BraA09t39727Z Brassica rapa HOM05D004394 ORTHO05D005208 8.2e-26 120.6 127 52.0
Thhalv10019322m.g Eutrema salsugineum HOM05D004394 ORTHO05D005208 8.2e-26 120.6 124 51.6
BcaC06g34947 Brassica carinata HOM05D004394 ORTHO05D005208 1.1e-25 120.2 125 52.8
BolC7t42673H Brassica oleracea HOM05D004394 ORTHO05D005208 1.1e-25 120.2 125 52.8
AUR62030717 Chenopodium quinoa HOM05D004394 ORTHO05D005208 1.1e-25 120.2 123 53.7
AUR62036356 Chenopodium quinoa HOM05D004394 ORTHO05D005208 1.1e-25 120.2 123 53.7
Aa31LG7G6210 Aethionema arabicum HOM05D004394 ORTHO05D005208 1.4e-25 119.8 124 52.4
AT1G22270 Arabidopsis thaliana HOM05D004394 ORTHO05D005208 1.4e-25 119.8 124 53.2
CiPaw.08G045200 Carya illinoinensis HOM05D004394 ORTHO05D005208 1.4e-25 119.8 122 54.1
Medtr1g050345 Medicago truncatula HOM05D004394 ORTHO05D005208 1.4e-25 119.8 123 54.5
ATR0782G020 Amborella trichopoda HOM05D004394 ORTHO05D005208 1.8e-25 119.4 123 52.8
Carub.0001s2182 Capsella rubella HOM05D004394 ORTHO05D005208 1.8e-25 119.4 124 52.4
Glyma.10G218300 Glycine max HOM05D004394 ORTHO05D005208 1.8e-25 119.4 123 54.5
Gorai.009G281400 Gossypium raimondii HOM05D004394 ORTHO05D005208 1.8e-25 119.4 124 55.6
A07p14580 Brassica napus HOM05D004394 ORTHO05D005208 2.4e-25 119.0 125 52.8
Gohir.D05G268800 Gossypium hirsutum HOM05D004394 ORTHO05D005208 2.4e-25 119.0 124 54.8
Sp1g19780 Schrenkiella parvula HOM05D004394 ORTHO05D005208 2.4e-25 119.0 125 52.0
AL1G35720 Arabidopsis lyrata HOM05D004394 ORTHO05D005208 3.1e-25 118.6 124 52.4
Sopen04g029330 Solanum pennellii HOM05D004394 ORTHO05D005208 3.1e-25 118.6 123 52.8
Ah.12g059310 Amaranthus hybridus HOM05D004394 ORTHO05D005208 4.1e-25 118.2 123 52.8
C07p21470 Brassica napus HOM05D004394 ORTHO05D005208 4.1e-25 118.2 124 52.4
CARHR071660 Cardamine hirsuta HOM05D004394 ORTHO05D005208 4.1e-25 118.2 124 52.4
Sp5g33330 Schrenkiella parvula HOM05D004394 ORTHO05D005208 4.1e-25 118.2 124 51.6
PGSC0003DMG400006413 Solanum tuberosum HOM05D004394 ORTHO05D005208 4.1e-25 118.2 123 52.8
Sed0012623 Sechium edule HOM05D004394 ORTHO05D005208 5.3e-25 117.9 123 51.2
BcaC05g26154 Brassica carinata HOM05D004394 ORTHO05D005208 7.0e-25 117.5 126 51.6
C05p21390 Brassica napus HOM05D004394 ORTHO05D005208 7.0e-25 117.5 126 51.6
CANSAT80G2869 Cannabis sativa HOM05D004394 ORTHO05D005208 7.0e-25 117.5 123 52.0
Thhalv10009116m.g Eutrema salsugineum HOM05D004394 ORTHO05D005208 9.1e-25 117.1 125 52.0
SHI20485 Sapria himalayana HOM05D004394 ORTHO05D005208 9.1e-25 117.1 122 52.5
EL10Ac5g11858 Beta vulgaris HOM05D004394 ORTHO05D005208 1.6e-24 116.3 123 52.0
THA.LOC104809715 Tarenaya hassleriana HOM05D004394 ORTHO05D005208 2.6e-24 115.5 124 50.8
AL2G38520 Arabidopsis lyrata HOM05D004394 ORTHO05D005208 3.5e-24 115.2 124 51.6
BolC5t30836H Brassica oleracea HOM05D004394 ORTHO05D005208 4.5e-24 114.8 126 50.8
CARHR022650 Cardamine hirsuta HOM05D004394 ORTHO05D005208 4.5e-24 114.8 124 50.0
AUR62027759 Chenopodium quinoa HOM05D004394 ORTHO05D005208 5.9e-24 114.4 123 51.2
COL.COLO4_16398 Corchorus olitorius HOM05D004394 ORTHO05D005208 5.9e-24 114.4 117 54.7
Phvul.002G138800 Phaseolus vulgaris HOM05D004394 ORTHO05D005208 7.7e-24 114.0 124 51.6
BcaB03g15991 Brassica carinata HOM05D004394 ORTHO05D005208 1.3e-23 113.2 124 49.2
Carub.0002s2509 Capsella rubella HOM05D004394 ORTHO05D005208 5.0e-23 111.3 126 50.0
Mapoly0008s0078 Marchantia polymorpha HOM05D004394 ORTHO05D005208 5.0e-23 111.3 123 46.3
Solyc04g074150.3 Solanum lycopersicum HOM05D004394 ORTHO05D005208 1.9e-22 109.4 116 51.7
C06p52130 Brassica napus HOM05D003496 ORTHO05D003909 4.2e-22 108.2 124 50.0
BolC6t40236H Brassica oleracea HOM05D003496 ORTHO05D003909 4.2e-22 108.2 124 50.0
BcaC08g47394 Brassica carinata HOM05D004394 ORTHO05D005208 9.4e-22 107.1 125 48.8
SEGI_05614 Sequoiadendron giganteum HOM05D004394 ORTHO05D005208 9.4e-22 107.1 123 47.2
SMO356G0508 Selaginella moellendorffii HOM05D004394 ORTHO05D005208 1.2e-21 106.7 123 48.0
AUR62038524 Chenopodium quinoa HOM05D004394 ORTHO05D005208 3.6e-21 105.1 82 59.8
Pp3c10_8220 Physcomitrium patens HOM05D004394 ORTHO05D005208 4.7e-21 104.8 123 44.7
BraA07t31861Z Brassica rapa HOM05D003496 ORTHO05D003909 8.0e-21 104.0 126 48.4
Rhsim06G0082000 Rhododendron simsii HOM05D004394 ORTHO05D005208 1.4e-20 103.2 82 59.8
CBR_g44926 Chara braunii HOM05D004394 ORTHO05D005208 1.8e-20 102.8 123 47.2
EL10Ac1g01214 Beta vulgaris HOM05D004394 ORTHO05D005208 2.3e-20 102.4 116 50.0
A07p43490 Brassica napus HOM05D003496 ORTHO05D003909 2.3e-20 102.4 124 47.6
CANSAT35G1737 Cannabis sativa HOM05D004394 ORTHO05D005208 2.3e-20 102.4 116 49.1
Haze_00323 Corylus avellana HOM05D004394 ORTHO05D005208 3.4e-19 98.6 123 47.2
BcaB03g14221 Brassica carinata HOM05D004394 ORTHO05D005208 2.2e-18 95.9 113 48.7
Os07g0623000 Oryza sativa ssp. japonica HOM05D004394 ORTHO05D005208 6.3e-18 94.4 131 42.0
Zm00001eb109660 Zea mays HOM05D004394 ORTHO05D005208 6.3e-18 94.4 132 41.7
Nn6g33602 Nelumbo nucifera HOM05D004394 ORTHO05D005208 8.3e-18 94.0 117 47.0
Cre12.g512550 Chlamydomonas reinhardtii HOM05D004394 ORTHO05D005208 1.8e-17 92.8 123 43.9
Nn4g22250 Nelumbo nucifera HOM05D004394 ORTHO05D005208 2.4e-17 92.4 110 47.3
CANSAT80G2909 Cannabis sativa HOM05D004394 ORTHO05D005208 3.1e-17 92.0 131 42.7
AagrBONN_evm.TU.Sc2ySwM_344.4664 Anthoceros agrestis HOM05D004394 ORTHO05D005208 5.3e-17 91.3 123 42.3
Nitab4.5_0005777g0070 Nicotiana tabacum HOM05D004394 ORTHO05D005208 9.1e-17 90.5 115 47.8
QL05p087667 Quercus lobata HOM05D004394 ORTHO05D000126 3.8e-15 85.1 80 53.8
Lsat_1_v5_gn_4_16040 Lactuca sativa HOM05D004394 ORTHO05D005208 2.5e-14 82.4 100 44.0
CiPaw.07G180000 Carya illinoinensis HOM05D004394 ORTHO05D005208 3.6e-13 78.6 107 45.8
MCO01G362 Micromonas commoda HOM05D004394 ORTHO05D005208 3.6e-13 78.6 125 36.8
Nn8g39569 Nelumbo nucifera HOM05D004394 ORTHO05D005208 4.7e-13 78.2 96 47.9
SEGI_26774 Sequoiadendron giganteum HOM05D004394 ORTHO05D005208 4.0e-12 75.1 68 52.9
Cfa016137 Carpinus fangiana HOM05D004394 ORTHO05D005208 3.7e-10 68.6 96 43.8
Nn1g03585 Nelumbo nucifera HOM05D004394 ORTHO05D005208 2.4e-09 65.9 58 56.9
PRCOL_00005343 Prasinoderma coloniale HOM05D004394 ORTHO05D005208 2.4e-09 65.9 131 29.8


User provided reference genes

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