Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc252.22 Carica papaya HOM05D007456 ORTHO05D009411 5.4e-176 621.3 368 100.0
THA.LOC104823813 Tarenaya hassleriana HOM05D007456 ORTHO05D009411 2.7e-42 177.2 291 45.0
AUR62005926 Chenopodium quinoa HOM05D007456 ORTHO05D009411 3.5e-42 176.8 166 49.4
FAN03G3193 Fragaria x ananassa HOM05D007456 ORTHO05D009411 6.6e-41 172.6 211 46.4
ClCG07G017250 Citrullus lanatus HOM05D007456 ORTHO05D009411 8.7e-41 172.2 154 54.5
Peaxi162Scf00398g00211 Petunia axillaris HOM05D007456 ORTHO05D009411 2.5e-40 170.6 205 46.8
EL10Ac3g05110 Beta vulgaris HOM05D007456 ORTHO05D009411 2.4e-38 164.1 166 47.0
CsaV3_4G004450 Cucumis sativus L. HOM05D007456 ORTHO05D009411 2.0e-37 161.0 167 49.7
BolC4t25953H Brassica oleracea HOM05D007456 ORTHO05D009411 5.8e-37 159.5 283 44.2
BcaC02g09523 Brassica carinata HOM05D007456 ORTHO05D009411 1.7e-36 157.9 283 44.2
C04p43710 Brassica napus HOM05D007456 ORTHO05D009411 2.9e-36 157.1 283 44.2
Thhalv10004016m.g Eutrema salsugineum HOM05D007456 ORTHO05D009411 2.7e-34 150.6 297 39.1
Sed0026452 Sechium edule HOM05D007456 ORTHO05D009411 7.8e-34 149.1 146 52.7
BcaB06g27033 Brassica carinata HOM05D007456 ORTHO05D009411 1.7e-33 147.9 284 42.6
BcaC02g09522 Brassica carinata HOM05D007456 ORTHO05D009411 1.5e-32 144.8 141 54.6
Sopen10g030890 Solanum pennellii HOM05D007456 ORTHO05D009411 3.3e-32 143.7 173 46.2
A04p10240 Brassica napus HOM05D007456 ORTHO05D009411 7.3e-32 142.5 283 46.3
BraA04t16690Z Brassica rapa HOM05D007456 ORTHO05D009411 7.3e-32 142.5 283 46.3
Sp7g05790 Schrenkiella parvula HOM05D007456 ORTHO05D009411 1.3e-31 141.7 287 41.5
Nitab4.5_0016432g0010 Nicotiana tabacum HOM05D007456 ORTHO05D009411 3.6e-31 140.2 152 50.0
AL7G45310 Arabidopsis lyrata HOM05D007456 ORTHO05D009411 1.1e-30 138.7 287 43.9
PGSC0003DMG400023682 Solanum tuberosum HOM05D007456 ORTHO05D009411 1.1e-30 138.7 148 49.3
Gohir.D04G076800 Gossypium hirsutum HOM05D007456 ORTHO05D009411 1.4e-30 138.3 157 49.0
FvH4_7g33530 Fragaria vesca HOM05D007456 ORTHO05D009411 5.8e-29 132.9 183 42.6
FvH4_7g33490 Fragaria vesca HOM05D007456 ORTHO05D009411 3.2e-27 127.1 182 41.2
MSTRG.26940 Avicennia marina HOM05D007456 ORTHO05D009411 5.4e-27 126.3 158 45.6
Gorai.012G086600 Gossypium raimondii HOM05D007456 ORTHO05D009411 5.4e-27 126.3 153 46.4
FAN19G0065 Fragaria x ananassa HOM05D007456 ORTHO05D009411 1.2e-26 125.2 120 55.8
Thecc.05G207800 Theobroma cacao HOM05D007456 ORTHO05D009411 1.6e-26 124.8 120 55.8
Gohir.A05G338400 Gossypium hirsutum HOM05D007456 ORTHO05D009411 6.0e-26 122.9 152 46.7
CSS0006842 Camellia sinensis var. sinensis HOM05D007456 ORTHO05D009411 6.9e-22 109.4 180 53.3
Nitab4.5_0004532g0030 Nicotiana tabacum HOM05D007456 ORTHO05D009411 1.3e-20 105.1 122 50.0
RcHm_v2.0_Chr1g0383591 Rosa chinensis HOM05D007456 ORTHO05D009411 6.4e-20 102.8 185 38.4
vmacro06487 Vaccinium macrocarpon HOM05D007456 ORTHO05D009411 8.4e-20 102.4 119 46.2
TAR375G0927 Trochodendron aralioides HOM05D007456 ORTHO05D009411 7.1e-19 99.4 140 45.0
Oeu026572.1 Olea europaea HOM05D007456 ORTHO05D009411 9.3e-19 99.0 136 39.0
AT5G36300 Arabidopsis thaliana HOM05D007456 ORTHO05D009411 4.6e-18 96.7 181 36.5
TAR375G0715 Trochodendron aralioides HOM05D007456 ORTHO05D009411 6.0e-18 96.3 140 44.3
Aqoxy245s001 Aquilegia oxysepala HOM05D007456 ORTHO05D009411 1.6e-15 88.2 104 40.4
GSVIVG01024456001 Vitis vinifera HOM05D007456 ORTHO05D009411 3.7e-15 87.0 137 37.2
Actinidia08731 Actinidia chinensis HOM05D007456 ORTHO05D009411 1.8e-14 84.7 126 40.5
Atru.BG.267.p Acer truncatum HOM05D007456 ORTHO05D009411 2.4e-14 84.3 82 56.1
Migut.F00108 Erythranthe guttata HOM05D007456 ORTHO05D009411 5.3e-14 83.2 178 32.0
FAN10G0306 Fragaria x ananassa HOM05D007456 ORTHO05D009411 5.3e-14 83.2 124 38.7
Nn1g09307 Nelumbo nucifera HOM05D007456 ORTHO05D009411 5.3e-14 83.2 71 60.6
FAN10G3274 Fragaria x ananassa HOM05D007456 ORTHO05D009411 6.9e-14 82.8 124 38.7
FAN01G1025 Fragaria x ananassa HOM05D007456 ORTHO05D009411 1.5e-13 81.6 213 28.2
Lj9A258G53 Lonicera japonica HOM05D007456 ORTHO05D009411 1.5e-13 81.6 132 38.6
CAN.G128.20 Capsicum annuum HOM05D007456 ORTHO05D009411 2.6e-13 80.9 125 41.6
Oeu055445.1 Olea europaea HOM05D007456 ORTHO05D009411 4.5e-13 80.1 108 40.7
FvH4_1g26290 Fragaria vesca HOM05D000003 ORTHO05D010713 5.8e-13 79.7 67 65.7
Oeu018668.1 Olea europaea HOM05D007456 ORTHO05D009411 3.8e-12 77.0 83 42.2
Aqoxy3G00913 Aquilegia oxysepala HOM05D007456 ORTHO05D009411 1.1e-11 75.5 119 36.1
MBI13_g23885_MAGBIO Magnolia biondii HOM05D007456 ORTHO05D009411 1.9e-11 74.7 69 50.7
PGR142G2334 Punica granatum HOM05D007456 ORTHO05D009411 1.9e-11 74.7 69 53.6
Aqoxy245s002 Aquilegia oxysepala HOM05D007456 ORTHO05D009411 4.2e-11 73.6 45 66.7
SGA_v2.0_scaffold44G16881 Striga asiatica HOM05D007456 ORTHO05D009411 5.5e-11 73.2 119 39.5
Dinv11972 Davidia involucrata HOM05D007456 ORTHO05D009411 9.3e-11 72.4 87 48.3
Lsat_1_v5_gn_4_134121 Lactuca sativa HOM05D007456 ORTHO05D009411 3.5e-10 70.5 65 52.3
Manes.08G164911 Manihot esculenta HOM05D007456 ORTHO05D009411 6.0e-10 69.7 110 40.0
DCAR_010527 Daucus carota HOM05D006163 ORTHO05D007625 7.9e-10 69.3 198 24.7
Lj1C1032G4 Lonicera japonica HOM05D007456 ORTHO05D009411 1.0e-09 68.9 291 23.0
ECA232G3382 Erigeron canadensis HOM05D007456 ORTHO05D009411 3.9e-09 67.0 60 61.7
RcHm_v2.0_Chr1g0383651 Rosa chinensis HOM05D007456 ORTHO05D009411 3.9e-09 67.0 173 30.1
Glyma.11G013600 Glycine max HOM05D007456 ORTHO05D009411 5.1e-09 66.6 137 38.7
Ah.07g203680 Amaranthus hybridus HOM05D007456 ORTHO05D009411 6.7e-09 66.2 67 49.3
AUR62018885 Chenopodium quinoa HOM05D007456 ORTHO05D009411 6.7e-09 66.2 69 42.0
Glyma.01G230600 Glycine max HOM05D007456 ORTHO05D009411 1.1e-08 65.5 69 47.8
HanXRQChr09g0260511 Helianthus annuus HOM05D007456 ORTHO05D009411 1.9e-08 64.7 100 37.0
RcHm_v2.0_Chr1g0383741 Rosa chinensis HOM05D007456 ORTHO05D009411 1.9e-08 64.7 48 58.3
QL09p026466 Quercus lobata HOM05D007456 ORTHO05D009411 4.3e-08 63.5 65 49.2
QL09p026540 Quercus lobata HOM05D007456 ORTHO05D009411 4.3e-08 63.5 65 49.2
CDE02G0352 Ceratophyllum demersum HOM05D007456 ORTHO05D009411 9.7e-08 62.4 52 59.6
Sc19g0000290 Simmondsia chinensis HOM05D007456 ORTHO05D009411 1.6e-07 61.6 116 36.2
Solyc10g080330.2 Solanum lycopersicum HOM05D007456 ORTHO05D009411 1.6e-07 61.6 62 50.0
CDE02G0006 Ceratophyllum demersum HOM05D007456 ORTHO05D009411 2.2e-07 61.2 52 57.7
FAN20G2687 Fragaria x ananassa HOM05D000148 ORTHO05D008179 2.2e-07 61.2 195 33.8
Rhsim01G0125300 Rhododendron simsii HOM05D007456 ORTHO05D009411 2.2e-07 61.2 53 54.7
TAR622G0387 Trochodendron aralioides HOM05D007202 ORTHO05D009125 2.2e-07 61.2 183 29.5
Gohir.A02G066400 Gossypium hirsutum HOM05D000001 ORTHO05D000003 3.7e-07 60.5 144 27.8
Prupe.2G323300 Prunus persica HOM05D007456 ORTHO05D009411 3.7e-07 60.5 106 37.7
Cfa015911 Carpinus fangiana HOM05D007456 ORTHO05D009411 4.8e-07 60.1 115 35.7
Hma1.2p1_0758F.1_g213530 Hydrangea macrophylla HOM05D007456 ORTHO05D009411 6.3e-07 59.7 59 54.2
MD01G1232900 Malus domestica HOM05D007456 ORTHO05D009411 6.3e-07 59.7 127 33.1
SalBow6G5229 Salvia bowleyana HOM05D007128 ORTHO05D009059 6.3e-07 59.7 132 28.8
Gorai.005G081500 Gossypium raimondii HOM05D000001 ORTHO05D000003 8.2e-07 59.3 144 27.1
Manes.18G087600 Manihot esculenta HOM05D000001 ORTHO05D000003 1.1e-06 58.9 161 24.8
Haze_00583 Corylus avellana HOM05D007456 ORTHO05D009411 1.8e-06 58.2 112 35.7
Peaxi162Scf00263g00035 Petunia axillaris HOM05D000001 ORTHO05D000003 2.4e-06 57.8 157 26.8
Gohir.D02G072300 Gossypium hirsutum HOM05D000001 ORTHO05D000003 3.1e-06 57.4 144 27.1
Os07g0548300 Oryza sativa ssp. japonica HOM05D006705 ORTHO05D008179 3.1e-06 57.4 95 36.8
Pp3c11_21930 Physcomitrium patens HOM05D006705 ORTHO05D008179 3.1e-06 57.4 110 35.5
Prupe.3G289100 Prunus persica HOM05D000001 ORTHO05D010338 3.1e-06 57.4 128 31.2
PGR119G1317 Punica granatum HOM05D000891 ORTHO05D000761 3.1e-06 57.4 130 27.7
Atru.chr1.3042 Acer truncatum HOM05D007335 ORTHO05D009113 4.1e-06 57.0 160 26.2
CANSAT35G1365 Cannabis sativa HOM05D000001 ORTHO05D000003 4.1e-06 57.0 144 27.8
Atru.chr1.3077 Acer truncatum HOM05D007335 ORTHO05D009113 5.3e-06 56.6 160 26.2
CiPaw.06G020600 Carya illinoinensis HOM05D007456 ORTHO05D009411 5.3e-06 56.6 81 44.4
Ca_01034_v3 Cicer arietinum L. HOM05D007335 ORTHO05D009113 5.3e-06 56.6 166 26.5
Zm00001eb315460 Zea mays HOM05D003689 ORTHO05D003950 5.3e-06 56.6 166 27.1
Zm00001eb323580 Zea mays HOM05D006705 ORTHO05D008179 5.3e-06 56.6 98 34.7
Ciclev10011504m.g Citrus clementina HOM05D007456 ORTHO05D009411 6.9e-06 56.2 119 38.7
BolC3t16653H Brassica oleracea HOM05D000001 ORTHO05D000003 9.0e-06 55.8 195 22.6
GSVIVG01013571001 Vitis vinifera HOM05D007128 ORTHO05D009059 9.0e-06 55.8 87 29.9


User provided reference genes

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