Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc250.13 Carica papaya HOM05D003858 ORTHO05D005878 2.2e-278 961.8 548 100.0
CiPaw.12G042900 Carya illinoinensis HOM05D003858 ORTHO05D005878 2.1e-233 812.4 539 81.8
Thecc.03G129000 Theobroma cacao HOM05D003858 ORTHO05D005878 3.1e-232 808.5 561 80.2
Ciclev10018838m.g Citrus clementina HOM05D003858 ORTHO05D005878 2.0e-231 805.8 557 80.1
Duzib205G0757 Durio zibethinus HOM05D003858 ORTHO05D005878 2.6e-231 805.4 525 81.1
Manes.06G119400 Manihot esculenta HOM05D003858 ORTHO05D005878 4.9e-230 801.2 538 83.1
COL.COLO4_28121 Corchorus olitorius HOM05D003858 ORTHO05D005878 7.1e-229 797.3 533 80.5
TWI23G0194 Tripterygium wilfordii HOM05D003858 ORTHO05D005878 8.7e-227 790.4 552 78.3
Gorai.003G120600 Gossypium raimondii HOM05D003858 ORTHO05D005878 2.5e-226 788.9 561 79.3
CiPaw.15G056500 Carya illinoinensis HOM05D003858 ORTHO05D005878 3.3e-226 788.5 526 80.6
Gohir.D03G114300 Gossypium hirsutum HOM05D003858 ORTHO05D005878 4.3e-226 788.1 560 78.6
Gohir.A03G052800 Gossypium hirsutum HOM05D003858 ORTHO05D005878 7.4e-226 787.3 552 79.9
CANSAT80G0729 Cannabis sativa HOM05D003858 ORTHO05D005878 2.8e-225 785.4 455 85.3
Haze_09759 Corylus avellana HOM05D003858 ORTHO05D005878 5.3e-224 781.2 547 75.7
Rhsim10G0051500 Rhododendron simsii HOM05D003858 ORTHO05D005878 9.0e-224 780.4 453 86.3
Atru.chr9.1128 Acer truncatum HOM05D003858 ORTHO05D005878 2.0e-223 779.2 540 77.2
Nn4g22329 Nelumbo nucifera HOM05D003858 ORTHO05D005878 7.7e-223 777.3 555 79.5
CSS0032323 Camellia sinensis var. sinensis HOM05D003858 ORTHO05D005878 2.2e-222 775.8 509 81.3
Rhsim12G0174400 Rhododendron simsii HOM05D003858 ORTHO05D005878 2.2e-222 775.8 447 86.8
TAR371G0204 Trochodendron aralioides HOM05D003858 ORTHO05D005878 5.0e-222 774.6 556 76.1
MELO3C002182.2 Cucumis melo HOM05D003858 ORTHO05D005878 8.5e-222 773.9 547 77.3
Dinv23145 Davidia involucrata HOM05D003858 ORTHO05D005878 8.5e-222 773.9 547 82.4
Actinidia08869 Actinidia chinensis HOM05D003858 ORTHO05D005878 1.9e-221 772.7 451 86.0
arahy.Tifrunner.gnm1.ann1.L81EPG Arachis hypogaea HOM05D003858 ORTHO05D005878 2.5e-221 772.3 529 80.0
Cfa015653 Carpinus fangiana HOM05D003858 ORTHO05D005878 7.2e-221 770.8 525 76.0
arahy.Tifrunner.gnm1.ann1.LEEI49 Arachis hypogaea HOM05D003858 ORTHO05D005878 1.2e-220 770.0 529 80.9
CsaV3_1G007630 Cucumis sativus L. HOM05D003858 ORTHO05D005878 2.7e-220 768.8 453 83.9
vmacro16677 Vaccinium macrocarpon HOM05D003858 ORTHO05D005878 4.6e-220 768.1 454 85.2
GSVIVG01008542001 Vitis vinifera HOM05D003858 ORTHO05D005878 4.6e-220 768.1 547 78.8
Nitab4.5_0005642g0040 Nicotiana tabacum HOM05D003858 ORTHO05D005878 1.3e-217 760.0 435 85.5
Sed0027713 Sechium edule HOM05D003858 ORTHO05D005878 1.7e-217 759.6 533 76.2
Haze_07135 Corylus avellana HOM05D003858 ORTHO05D005878 2.2e-217 759.2 532 77.3
HanXRQChr02g0034711 Helianthus annuus HOM05D003858 ORTHO05D005878 2.2e-217 759.2 511 79.8
ECA247G4076 Erigeron canadensis HOM05D003858 ORTHO05D005878 6.3e-217 757.7 538 81.4
SGA_v2.0_scaffold2G01192 Striga asiatica HOM05D003858 ORTHO05D005878 1.1e-216 756.9 537 79.3
Potri.015G096100 Populus trichocarpa HOM05D003858 ORTHO05D005878 4.1e-216 755.0 463 82.5
Nitab4.5_0006042g0010 Nicotiana tabacum HOM05D003858 ORTHO05D005878 1.5e-215 753.1 432 85.2
Cc10_g13400 Coffea canephora HOM05D003858 ORTHO05D005878 3.4e-215 751.9 467 82.4
DCAR_001872 Daucus carota HOM05D003858 ORTHO05D005878 1.0e-214 750.4 438 84.7
Sabra15G0116900 Salix brachista HOM05D003858 ORTHO05D005878 1.3e-214 750.0 545 78.3
MD14G1157300 Malus domestica HOM05D003858 ORTHO05D005878 5.0e-214 748.0 525 81.0
Peaxi162Scf00119g00520 Petunia axillaris HOM05D003858 ORTHO05D005878 1.9e-213 746.1 444 84.2
SGA_v2.0_scaffold28G11963 Striga asiatica HOM05D003858 ORTHO05D005878 2.5e-213 745.7 447 85.0
QL10p002959 Quercus lobata HOM05D003858 ORTHO05D005878 1.2e-212 743.4 554 74.7
CAN.G774.2 Capsicum annuum HOM05D003858 ORTHO05D005878 6.1e-212 741.1 458 81.0
Prupe.5G151200 Prunus persica HOM05D003858 ORTHO05D005878 1.0e-211 740.3 526 78.5
Oeu001550.1 Olea europaea HOM05D003858 ORTHO05D005878 3.0e-211 738.8 458 83.2
Glyma.18G230300 Glycine max HOM05D003858 ORTHO05D005878 3.9e-211 738.4 437 85.1
RcHm_v2.0_Chr7g0190211 Rosa chinensis HOM05D003858 ORTHO05D005878 6.7e-211 737.6 527 77.6
Solyc08g080850.4 Solanum lycopersicum HOM05D003858 ORTHO05D005878 8.8e-211 737.3 487 79.5
Hund02439 Selenicereus undatus HOM05D003858 ORTHO05D005878 1.1e-210 736.9 528 77.5
SalBow6G4120 Salvia bowleyana HOM05D003858 ORTHO05D005878 2.0e-210 736.1 433 85.7
Lsat_1_v5_gn_1_28960 Lactuca sativa HOM05D003858 ORTHO05D005878 1.7e-209 733.0 453 81.9
PGSC0003DMG400012349 Solanum tuberosum HOM05D003858 ORTHO05D005878 1.7e-209 733.0 485 78.8
Sopen08g029150 Solanum pennellii HOM05D003858 ORTHO05D005878 2.2e-209 732.6 421 85.5
FAN08G1590 Fragaria x ananassa HOM05D003858 ORTHO05D005878 8.2e-209 730.7 527 77.2
Lalb_Chr01g0021111 Lupinus albus HOM05D003858 ORTHO05D005878 1.1e-208 730.3 525 79.2
FvH4_5g08310 Fragaria vesca HOM05D003858 ORTHO05D005878 4.1e-208 728.4 525 77.1
Lj1g0027711 Lotus japonicus HOM05D003858 ORTHO05D005878 4.1e-208 728.4 464 81.2
Hma1.2p1_0014F.1_g009460 Hydrangea macrophylla HOM05D003858 ORTHO05D005878 1.2e-207 726.9 499 77.8
Phvul.008G067600 Phaseolus vulgaris HOM05D003858 ORTHO05D005878 3.5e-207 725.3 443 82.8
Glyma.09G261800 Glycine max HOM05D003858 ORTHO05D005878 1.3e-206 723.4 425 86.8
PGR004G1062 Punica granatum HOM05D003858 ORTHO05D005878 1.7e-206 723.0 431 84.0
Migut.N03254 Erythranthe guttata HOM05D003858 ORTHO05D005878 1.5e-205 719.9 469 78.9
THA.LOC104800505 Tarenaya hassleriana HOM05D003858 ORTHO05D005878 6.1e-204 714.5 542 76.9
AUR62028258 Chenopodium quinoa HOM05D003858 ORTHO05D005878 1.0e-203 713.8 439 82.2
Sc10g0010460 Simmondsia chinensis HOM05D003858 ORTHO05D005878 3.0e-203 712.2 524 79.4
Ah.01g020640 Amaranthus hybridus HOM05D003858 ORTHO05D005878 6.7e-203 711.1 569 74.0
DCAR_021618 Daucus carota HOM05D003858 ORTHO05D005878 6.7e-203 711.1 487 74.3
PSO478G4955 Papaver somniferum HOM05D003858 ORTHO05D005878 6.7e-203 711.1 500 75.8
PSO017G3328 Papaver somniferum HOM05D003858 ORTHO05D005878 1.1e-202 710.3 500 75.4
Lj5C96T4 Lonicera japonica HOM05D003858 ORTHO05D005878 1.7e-201 706.4 488 75.6
TPR.G2433 Trifolium pratense HOM05D003858 ORTHO05D005878 6.3e-201 704.5 445 80.4
A04p19370 Brassica napus HOM05D003858 ORTHO05D005878 7.0e-200 701.0 555 73.9
Sp4g03970 Schrenkiella parvula HOM05D003858 ORTHO05D005878 7.0e-200 701.0 423 80.9
BcaB06g28028 Brassica carinata HOM05D003858 ORTHO05D005878 1.2e-199 700.3 450 76.7
Aqoxy3G00800 Aquilegia oxysepala HOM05D003858 ORTHO05D005878 2.0e-199 699.5 451 77.6
AT5G37350 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 2.0e-199 699.5 447 78.1
BcaC02g08384 Brassica carinata HOM05D003858 ORTHO05D005878 2.0e-199 699.5 451 76.9
C04p54940 Brassica napus HOM05D003858 ORTHO05D005878 2.0e-199 699.5 451 76.9
Eucgr.E01497 Eucalyptus grandis HOM05D003858 ORTHO05D005878 2.0e-199 699.5 540 71.5
AL4G16080 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 2.6e-199 699.1 431 79.8
BraA04t17533Z Brassica rapa HOM05D003858 ORTHO05D005878 4.5e-199 698.4 451 76.9
Medtr7g090710 Medicago truncatula HOM05D003858 ORTHO05D005878 7.7e-199 697.6 455 78.9
AT2G24990 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 3.8e-198 695.3 433 78.8
Carub.0004s0455 Capsella rubella HOM05D003858 ORTHO05D005878 5.0e-198 694.9 528 75.0
Thhalv10000120m.g Eutrema salsugineum HOM05D003858 ORTHO05D005878 1.9e-197 693.0 423 79.9
BolC4t27030H Brassica oleracea HOM05D003858 ORTHO05D005878 1.6e-196 689.9 451 76.7
Aa31sc86G50 Aethionema arabicum HOM05D003858 ORTHO05D005878 6.1e-196 688.0 429 78.6
EL10Ac9g21903 Beta vulgaris HOM05D003858 ORTHO05D005878 6.1e-196 688.0 420 82.6
CDE05G2345 Ceratophyllum demersum HOM05D003858 ORTHO05D005878 1.0e-195 687.2 457 76.8
VMungo1383G3568 Vigna mungo HOM05D003858 ORTHO05D005878 4.0e-195 685.3 444 79.5
CARHR116740 Cardamine hirsuta HOM05D003858 ORTHO05D005878 7.5e-194 681.0 423 79.2
SalBow7G4372 Salvia bowleyana HOM05D003858 ORTHO05D005878 1.4e-187 660.2 441 78.7
FAN04G1110 Fragaria x ananassa HOM05D003858 ORTHO05D005878 5.2e-187 658.3 530 72.3
ClCG01G014690 Citrullus lanatus HOM05D003858 ORTHO05D005878 6.8e-187 657.9 534 70.4
FAN18G4532 Fragaria x ananassa HOM05D003858 ORTHO05D005878 4.9e-185 651.7 529 71.8
AL7G45930 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 1.7e-182 643.3 424 76.4
VMungo1383G2243 Vigna mungo HOM05D003858 ORTHO05D005878 8.6e-182 641.0 424 78.1
Aa31LG8G17300 Aethionema arabicum HOM05D003858 ORTHO05D005878 8.9e-179 630.9 430 74.2
Psat3g110800 Pisum sativum HOM05D003858 ORTHO05D005878 2.0e-175 619.8 419 76.6
RcHm_v2.0_Chr5g0020401 Rosa chinensis HOM05D003858 ORTHO05D005878 2.7e-175 619.4 438 70.5
SEGI_19941 Sequoiadendron giganteum HOM05D003858 ORTHO05D005878 3.9e-174 615.5 438 69.4
ATR0559G302 Amborella trichopoda HOM05D003858 ORTHO05D005878 2.5e-173 612.8 454 69.8
AUR62003032 Chenopodium quinoa HOM05D003858 ORTHO05D005878 2.5e-173 612.8 364 84.1
AUR62007839 Chenopodium quinoa HOM05D003858 ORTHO05D005878 1.2e-172 610.5 396 79.5
HPP92_020969 Vanilla planifolia HOM05D003858 ORTHO05D005878 1.2e-172 610.5 434 71.9
TAR629G0830 Trochodendron aralioides HOM05D003858 ORTHO05D005878 3.1e-171 605.9 362 84.5
unitig_21.g20184 Utricularia gibba HOM05D003858 ORTHO05D005878 3.1e-171 605.9 458 69.4
Zm00001eb256840 Zea mays HOM05D003858 ORTHO05D005878 6.4e-169 598.2 437 71.4
Zm00001eb103140 Zea mays HOM05D003858 ORTHO05D005878 1.4e-168 597.0 437 71.4
PSO170G6136 Papaver somniferum HOM05D003858 ORTHO05D005878 5.4e-168 595.1 487 65.5
Os07g0162300 Oryza sativa ssp. japonica HOM05D003858 ORTHO05D005878 4.3e-165 585.5 416 71.2
TPR.G23280 Trifolium pratense HOM05D003858 ORTHO05D005878 9.5e-165 584.3 353 81.9
MBI07_g31017_MAGBIO Magnolia biondii HOM05D003858 ORTHO05D005878 5.2e-163 578.6 349 81.4
Ca_07893_v3 Cicer arietinum L. HOM05D003858 ORTHO05D005878 2.4e-160 569.7 380 77.1
FvH4_5g16770 Fragaria vesca HOM05D003858 ORTHO05D005878 3.9e-158 562.4 430 66.7
FAN16G2509 Fragaria x ananassa HOM05D003858 ORTHO05D005878 1.1e-157 560.8 430 66.0
MD06G1142000 Malus domestica HOM05D003858 ORTHO05D005878 1.5e-154 550.4 419 68.7
Mapoly0084s0039 Marchantia polymorpha HOM05D003858 ORTHO05D005878 1.6e-151 540.4 451 61.9
SMO117G0291 Selaginella moellendorffii HOM05D003858 ORTHO05D005878 2.1e-151 540.0 423 64.5
FAN20G1682 Fragaria x ananassa HOM05D003858 ORTHO05D005878 2.2e-145 520.0 493 57.8
Lj7A11G39 Lonicera japonica HOM05D003858 ORTHO05D005878 1.6e-140 503.8 508 55.5
Medtr7g076710 Medicago truncatula HOM05D003858 ORTHO05D005878 6.9e-139 498.4 374 69.5
Lj7A12G16 Lonicera japonica HOM05D003858 ORTHO05D005878 1.4e-131 474.2 450 56.0
PSO724G1315 Papaver somniferum HOM05D003858 ORTHO05D005878 3.1e-131 473.0 488 55.5
Medtr7g012400 Medicago truncatula HOM05D003858 ORTHO05D005878 9.0e-131 471.5 392 64.3
PSO423G0213 Papaver somniferum HOM05D003858 ORTHO05D005878 1.7e-129 467.2 370 67.0
AagrBONN_evm.TU.Sc2ySwM_228.678 Anthoceros agrestis HOM05D003858 ORTHO05D005878 2.2e-129 466.8 396 59.3
TPR.G21069 Trifolium pratense HOM05D003858 ORTHO05D005878 4.9e-129 465.7 421 60.6
Pp3c21_1450 Physcomitrium patens HOM05D003858 ORTHO05D005878 1.1e-128 464.5 375 62.9
SHI21468 Sapria himalayana HOM05D003858 ORTHO05D005878 7.1e-128 461.8 719 44.6
PSO170G3101 Papaver somniferum HOM05D003858 ORTHO05D005878 2.8e-124 449.9 362 65.2
Cre13.g580900 Chlamydomonas reinhardtii HOM05D003858 ORTHO05D005878 2.4e-123 446.8 484 50.4
PSO724G0964 Papaver somniferum HOM05D003858 ORTHO05D005878 1.9e-120 437.2 420 59.3
PSO724G1140 Papaver somniferum HOM05D003858 ORTHO05D005878 1.8e-118 430.6 416 58.9
PRCOL_00003781 Prasinoderma coloniale HOM05D003858 ORTHO05D005878 2.1e-111 407.1 405 52.6
RcHm_v2.0_Chr5g0063241 Rosa chinensis HOM05D003858 ORTHO05D005878 3.5e-111 406.4 464 52.2
MCO12G200 Micromonas commoda HOM05D003858 ORTHO05D005878 4.8e-108 396.0 356 58.1
RcHm_v2.0_Chr5g0063291 Rosa chinensis HOM05D003858 ORTHO05D005878 5.3e-107 392.5 455 50.8
Ca_28300_v3 Cicer arietinum L. HOM05D003858 ORTHO05D005878 2.1e-103 380.6 296 67.2
SHI21367 Sapria himalayana HOM05D003858 ORTHO05D005878 1.5e-101 374.4 480 46.7
PSO063G1302 Papaver somniferum HOM05D003858 ORTHO05D005878 6.3e-100 369.0 281 68.3
Zm00001eb256780 Zea mays HOM05D003858 ORTHO05D005878 1.2e-98 364.8 257 75.5
CBR_g61467 Chara braunii HOM05D003858 ORTHO05D005878 3.6e-95 353.2 304 60.2
DCAR_029022 Daucus carota HOM05D003858 ORTHO05D005878 5.3e-91 339.3 427 46.8
Haze_27048 Corylus avellana HOM05D003858 ORTHO05D005878 1.2e-82 311.6 382 42.7
arahy.Tifrunner.gnm1.ann1.RIH0QL Arachis hypogaea HOM05D003858 ORTHO05D015239 5.5e-80 302.8 265 70.6
CDE05G1919 Ceratophyllum demersum HOM05D003858 ORTHO05D015239 2.1e-79 300.8 202 73.8
Cfa023770 Carpinus fangiana HOM05D003858 ORTHO05D005878 1.2e-77 295.0 330 48.2
Actinidia36803 Actinidia chinensis HOM05D003858 ORTHO05D015239 3.8e-73 280.0 173 82.1
PSO421G0376 Papaver somniferum HOM05D003858 ORTHO05D015239 3.0e-70 270.4 356 47.2
Actinidia36804 Actinidia chinensis HOM05D003858 ORTHO05D005878 2.5e-56 224.2 292 49.0
Cc10_g13370 Coffea canephora HOM05D003858 ORTHO05D015239 1.5e-40 171.8 98 80.6
FAN13G2455 Fragaria x ananassa HOM05D003858 ORTHO05D015239 3.9e-33 147.1 100 71.0
FAN08G1067 Fragaria x ananassa HOM05D003858 ORTHO05D015239 1.1e-30 139.0 194 43.3
Zm00001eb256800 Zea mays HOM05D003858 ORTHO05D033539 1.3e-28 132.1 129 60.5
Medtr6g024025 Medicago truncatula HOM05D003858 ORTHO05D267118 1.2e-26 125.6 106 63.2
AUR62028260 Chenopodium quinoa HOM05D008347 ORTHO05D006373 4.6e-26 123.6 93 74.2
FvH4_3g12461 Fragaria vesca HOM05D000004 ORTHO05D000002 7.3e-24 116.3 148 45.9
BolC8t51470H Brassica oleracea HOM05D003858 ORTHO05D015239 1.3e-23 115.5 122 53.3
C08p38970 Brassica napus HOM05D003858 ORTHO05D033539 2.8e-23 114.4 146 47.9
FAN08G1033 Fragaria x ananassa HOM05D003858 ORTHO05D005878 2.8e-23 114.4 70 77.1
BolC8t51471H Brassica oleracea HOM05D003858 ORTHO05D033539 4.5e-21 107.1 146 46.6
CBR_g61468 Chara braunii HOM05D003858 ORTHO05D131775 1.7e-20 105.1 155 45.2
PSO675G5360 Papaver somniferum HOM05D003858 ORTHO05D015239 1.1e-19 102.4 217 41.0
FAN21G1362 Fragaria x ananassa HOM05D003858 ORTHO05D207154 9.3e-19 99.4 176 36.4
FvH4_5g25261 Fragaria vesca HOM05D003858 ORTHO05D015239 2.7e-18 97.8 76 64.5
TAR625G0709 Trochodendron aralioides HOM05D003858 ORTHO05D015239 6.0e-18 96.7 45 97.8
HanXRQChr13g0426321 Helianthus annuus HOM05D003858 ORTHO05D000008 2.8e-15 87.8 75 56.0
COL.COLO4_09285 Corchorus olitorius HOM05D003858 ORTHO05D155188 9.0e-14 82.8 46 84.8
Zm00001eb256810 Zea mays HOM05D003858 ORTHO05D005878 1.2e-13 82.4 102 45.1
BcaC07g40899 Brassica carinata HOM05D003858 ORTHO05D015239 7.6e-13 79.7 122 41.8
ECA247G3834 Erigeron canadensis HOM05D000031 ORTHO05D000030 1.1e-11 75.9 85 49.4
ECA247G3860 Erigeron canadensis HOM05D000031 ORTHO05D000030 1.4e-11 75.5 76 55.3
Peaxi162Scf00586g00512 Petunia axillaris HOM05D004480 ORTHO05D005546 1.1e-08 65.9 199 25.1
DCAR_007996 Daucus carota HOM05D003858 ORTHO05D176634 1.5e-08 65.5 95 41.1
CiPaw.05G188800 Carya illinoinensis HOM05D003858 ORTHO05D127864 1.3e-07 62.4 39 79.5
Nitab4.5_0002844g0040 Nicotiana tabacum HOM05D004480 ORTHO05D005546 1.3e-07 62.4 211 26.5
Potri.017G001100 Populus trichocarpa HOM05D004480 ORTHO05D005546 1.4e-06 58.9 203 24.1
Sabra17G0005500 Salix brachista HOM05D000001 ORTHO05D005546 9.0e-06 56.2 203 23.6


User provided reference genes

Program Settings