Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc25.203 Carica papaya HOM05D004903 ORTHO05D005849 6.0e-112 407.5 207 100.0
Duzib160G0805 Durio zibethinus HOM05D004903 ORTHO05D005849 1.5e-83 313.2 185 80.0
Gohir.D06G202400 Gossypium hirsutum HOM05D004903 ORTHO05D005849 2.6e-83 312.4 185 81.1
Gorai.010G236300 Gossypium raimondii HOM05D004903 ORTHO05D005849 2.6e-83 312.4 185 81.1
COL.COLO4_30880 Corchorus olitorius HOM05D004903 ORTHO05D005849 1.7e-82 309.7 185 79.5
Thecc.06G131400 Theobroma cacao HOM05D004903 ORTHO05D005849 2.9e-82 308.9 185 78.4
Gohir.A06G142500 Gossypium hirsutum HOM05D004903 ORTHO05D005849 3.6e-80 302.0 185 77.8
C06p09540 Brassica napus HOM05D004903 ORTHO05D005849 1.0e-79 300.4 185 79.5
BolC6t36028H Brassica oleracea HOM05D004903 ORTHO05D005849 1.0e-79 300.4 185 79.5
Gorai.010G172600 Gossypium raimondii HOM05D004903 ORTHO05D005849 1.0e-79 300.4 185 77.3
A06p00790 Brassica napus HOM05D004903 ORTHO05D005849 2.3e-79 299.3 185 78.9
Gohir.A06G194700 Gossypium hirsutum HOM05D004903 ORTHO05D005849 2.3e-79 299.3 185 78.4
BcaB07g33303 Brassica carinata HOM05D004903 ORTHO05D005849 3.9e-79 298.5 185 78.4
BcaC08g43554 Brassica carinata HOM05D004903 ORTHO05D005849 5.1e-79 298.1 185 78.9
BraA06t23313Z Brassica rapa HOM05D004903 ORTHO05D005849 5.1e-79 298.1 185 78.9
THA.LOC104810400 Tarenaya hassleriana HOM05D004903 ORTHO05D005849 8.8e-79 297.4 185 77.8
AT1G53760 Arabidopsis thaliana HOM05D004903 ORTHO05D005849 2.0e-78 296.2 185 77.8
TAR624G0709 Trochodendron aralioides HOM05D004903 ORTHO05D005849 2.0e-78 296.2 185 74.6
A05p17920 Brassica napus HOM05D004903 ORTHO05D005849 3.3e-78 295.4 185 77.3
C06p15280 Brassica napus HOM05D004903 ORTHO05D005849 3.3e-78 295.4 185 77.3
Aa31LG10G1530 Aethionema arabicum HOM05D000070 ORTHO05D003301 4.4e-78 295.0 185 76.2
AL1G62450 Arabidopsis lyrata HOM05D004903 ORTHO05D005849 4.4e-78 295.0 185 77.3
Manes.11G011500 Manihot esculenta HOM05D004903 ORTHO05D005849 4.4e-78 295.0 185 76.8
Prupe.3G030200 Prunus persica HOM05D004903 ORTHO05D005849 4.4e-78 295.0 189 75.7
Sp1g40280 Schrenkiella parvula HOM05D004903 ORTHO05D005849 4.4e-78 295.0 185 76.8
Carub.0001s4303 Capsella rubella HOM05D004903 ORTHO05D005849 5.7e-78 294.7 185 76.8
BcaB02g10893 Brassica carinata HOM05D004903 ORTHO05D005849 7.4e-78 294.3 185 76.8
BcaC08g44129 Brassica carinata HOM05D004903 ORTHO05D005849 7.4e-78 294.3 185 76.8
Thhalv10011709m.g Eutrema salsugineum HOM05D004903 ORTHO05D005849 7.4e-78 294.3 185 76.2
BraA05t20686Z Brassica rapa HOM05D004903 ORTHO05D005849 9.7e-78 293.9 185 76.8
CiPaw.01G210600 Carya illinoinensis HOM05D004903 ORTHO05D005849 9.7e-78 293.9 190 75.8
GSVIVG01016657001 Vitis vinifera HOM05D004903 ORTHO05D005849 1.7e-77 293.1 185 75.1
BolC6t36703H Brassica oleracea HOM05D004903 ORTHO05D005849 2.2e-77 292.7 185 76.2
CARHR044070 Cardamine hirsuta HOM05D004903 ORTHO05D005849 2.8e-77 292.4 185 76.8
Dinv20374 Davidia involucrata HOM05D004903 ORTHO05D005849 6.3e-77 291.2 189 75.1
Glyma.07G046600 Glycine max HOM05D004903 ORTHO05D005849 2.4e-76 289.3 186 75.3
Gorai.011G054300 Gossypium raimondii HOM05D004903 ORTHO05D005849 3.1e-76 288.9 185 75.7
QL05p000658 Quercus lobata HOM05D004903 ORTHO05D005849 5.3e-76 288.1 189 73.5
QL05p000751 Quercus lobata HOM05D004903 ORTHO05D005849 5.3e-76 288.1 189 73.5
Rhsim08G0245600 Rhododendron simsii HOM05D004903 ORTHO05D005849 9.1e-76 287.3 187 75.4
FAN09G2808 Fragaria x ananassa HOM05D004903 ORTHO05D005849 3.4e-75 285.4 199 70.9
FAN14G1686 Fragaria x ananassa HOM05D004903 ORTHO05D005849 3.4e-75 285.4 199 70.9
Atru.chr1.4170 Acer truncatum HOM05D004903 ORTHO05D005849 4.5e-75 285.0 185 74.6
CAN.G1633.2 Capsicum annuum HOM05D004903 ORTHO05D005849 4.5e-75 285.0 187 75.4
Lj3g0025901 Lotus japonicus HOM05D004903 ORTHO05D005849 5.9e-75 284.6 186 75.3
Nitab4.5_0006190g0020 Nicotiana tabacum HOM05D004903 ORTHO05D005849 5.9e-75 284.6 186 75.8
FAN14G0435 Fragaria x ananassa HOM05D004903 ORTHO05D005849 1.0e-74 283.9 195 71.8
CSS0022789 Camellia sinensis var. sinensis HOM05D004903 ORTHO05D005849 1.7e-74 283.1 186 74.2
FvH4_6g36070 Fragaria vesca HOM05D004903 ORTHO05D005849 1.7e-74 283.1 197 70.6
RcHm_v2.0_Chr2g0148141 Rosa chinensis HOM05D004903 ORTHO05D005849 2.9e-74 282.3 199 70.4
FAN02G0327 Fragaria x ananassa HOM05D004903 ORTHO05D005849 3.8e-74 282.0 195 71.3
Hund18627 Selenicereus undatus HOM05D004903 ORTHO05D005849 5.0e-74 281.6 186 72.0
Potri.001G161800 Populus trichocarpa HOM05D004903 ORTHO05D005849 6.5e-74 281.2 185 71.9
Peaxi162Scf00207g01534 Petunia axillaris HOM05D004903 ORTHO05D005849 8.5e-74 280.8 186 74.2
Actinidia25997 Actinidia chinensis HOM05D004903 ORTHO05D005849 1.1e-73 280.4 186 71.5
MD09G1171800 Malus domestica HOM05D004903 ORTHO05D005849 1.4e-73 280.0 194 70.1
Nitab4.5_0010570g0050 Nicotiana tabacum HOM05D004903 ORTHO05D005849 1.4e-73 280.0 188 73.4
Sc12g0011010 Simmondsia chinensis HOM05D004903 ORTHO05D005849 1.4e-73 280.0 186 72.0
Nn8g38503 Nelumbo nucifera HOM05D004903 ORTHO05D005849 1.9e-73 279.6 201 68.2
Lalb_Chr17g0343171 Lupinus albus HOM05D004903 ORTHO05D005849 2.5e-73 279.3 186 72.6
PGSC0003DMG400004869 Solanum tuberosum HOM05D004903 ORTHO05D005849 2.5e-73 279.3 187 74.3
arahy.Tifrunner.gnm1.ann1.97GHXX Arachis hypogaea HOM05D004903 ORTHO05D005849 3.2e-73 278.9 188 72.3
CANSAT56G0172 Cannabis sativa HOM05D004903 ORTHO05D005849 3.2e-73 278.9 188 72.9
Glyma.16G015600 Glycine max HOM05D004903 ORTHO05D005849 3.2e-73 278.9 188 71.3
Ciclev10026250m.g Citrus clementina HOM05D004903 ORTHO05D005849 7.2e-73 277.7 186 71.0
AUR62001391 Chenopodium quinoa HOM05D004903 ORTHO05D005849 9.4e-73 277.3 187 70.1
TPR.G15248 Trifolium pratense HOM05D004903 ORTHO05D005849 1.2e-72 276.9 189 70.4
Hma1.2p1_1999F.1_g310500 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 2.1e-72 276.2 192 70.8
TWI59G0350 Tripterygium wilfordii HOM05D004903 ORTHO05D005849 2.1e-72 276.2 192 67.2
Solyc06g063130.3 Solanum lycopersicum HOM05D004903 ORTHO05D005849 2.7e-72 275.8 187 72.7
Lj5A28T47 Lonicera japonica HOM05D004903 ORTHO05D005849 3.6e-72 275.4 185 71.9
ClCG09G001430 Citrullus lanatus HOM05D004903 ORTHO05D005849 4.7e-72 275.0 194 69.6
CsaV3_7G033900 Cucumis sativus L. HOM05D004903 ORTHO05D005849 6.1e-72 274.6 194 68.6
Sopen06g022580 Solanum pennellii HOM05D004903 ORTHO05D005849 6.1e-72 274.6 187 72.2
VMungo0331G0875 Vigna mungo HOM05D004903 ORTHO05D005849 1.4e-71 273.5 186 73.1
PSO135G0609 Papaver somniferum HOM05D004903 ORTHO05D005849 1.8e-71 273.1 183 68.9
MELO3C024303.2 Cucumis melo HOM05D004903 ORTHO05D005849 3.0e-71 272.3 193 68.9
PSO724G0850 Papaver somniferum HOM05D004903 ORTHO05D005849 3.0e-71 272.3 183 68.9
Actinidia24416 Actinidia chinensis HOM05D004903 ORTHO05D005849 3.9e-71 271.9 194 68.6
Aqoxy7G00919 Aquilegia oxysepala HOM05D004903 ORTHO05D005849 6.7e-71 271.2 193 68.4
EL10Ac7g18248 Beta vulgaris HOM05D004903 ORTHO05D005849 6.7e-71 271.2 185 70.8
Lsat_1_v5_gn_5_137641 Lactuca sativa HOM05D004903 ORTHO05D005849 6.7e-71 271.2 186 69.9
Medtr8g023500 Medicago truncatula HOM05D004903 ORTHO05D005849 6.7e-71 271.2 196 68.4
Ca_23466_v3 Cicer arietinum L. HOM05D004903 ORTHO05D005849 8.8e-71 270.8 187 69.5
MD17G1155200 Malus domestica HOM05D004903 ORTHO05D005849 8.8e-71 270.8 194 68.6
arahy.Tifrunner.gnm1.ann1.HDKQ14 Arachis hypogaea HOM05D004903 ORTHO05D005849 1.7e-69 266.5 208 65.9
Phvul.010G122300 Phaseolus vulgaris HOM05D004903 ORTHO05D005849 2.8e-69 265.8 185 68.1
DCAR_022636 Daucus carota HOM05D004903 ORTHO05D005849 6.3e-69 264.6 194 66.0
Sed0027894 Sechium edule HOM05D004903 ORTHO05D005849 6.3e-69 264.6 198 66.2
arahy.Tifrunner.gnm1.ann1.AA2XIP Arachis hypogaea HOM05D004903 ORTHO05D005849 1.4e-68 263.5 189 68.3
arahy.Tifrunner.gnm1.ann1.3XU7EE Arachis hypogaea HOM05D004903 ORTHO05D005849 7.0e-68 261.2 187 69.0
HanXRQChr12g0360041 Helianthus annuus HOM05D004903 ORTHO05D005849 7.0e-68 261.2 186 65.6
arahy.Tifrunner.gnm1.ann1.M9BVNS Arachis hypogaea HOM05D004903 ORTHO05D005849 1.6e-67 260.0 188 68.1
Eucgr.J02586 Eucalyptus grandis HOM05D004903 ORTHO05D005849 1.6e-67 260.0 186 68.3
SalBow6G3230 Salvia bowleyana HOM05D004903 ORTHO05D005849 4.5e-67 258.5 185 67.0
Migut.I01143 Erythranthe guttata HOM05D004903 ORTHO05D005849 1.7e-66 256.5 188 66.0
Psat4g164720 Pisum sativum HOM05D004903 ORTHO05D005849 2.9e-66 255.8 185 65.9
arahy.Tifrunner.gnm1.ann1.5Z4EMJ Arachis hypogaea HOM05D004903 ORTHO05D005849 3.8e-66 255.4 185 68.6
vmacro18714 Vaccinium macrocarpon HOM05D004903 ORTHO05D005849 5.0e-66 255.0 187 67.4
Oeu053414.1 Olea europaea HOM05D004903 ORTHO05D005849 1.9e-65 253.1 190 66.8
MBI17_g12875_MAGBIO Magnolia biondii HOM05D004903 ORTHO05D005849 1.2e-64 250.4 185 63.2
ATR0006G080 Amborella trichopoda HOM05D004903 ORTHO05D005849 2.7e-64 249.2 185 61.6
Oeu019513.1 Olea europaea HOM05D004903 ORTHO05D005849 4.7e-64 248.4 192 65.1
HPP92_000828 Vanilla planifolia HOM05D004903 ORTHO05D005849 8.0e-64 247.7 185 65.4
Sabra03G0044200 Salix brachista HOM05D004903 ORTHO05D005849 1.4e-63 246.9 216 58.8
Gohir.A10G050050 Gossypium hirsutum HOM05D004903 ORTHO05D005849 5.2e-63 245.0 221 59.3
MSTRG.10905 Avicennia marina HOM05D004903 ORTHO05D005849 1.2e-62 243.8 193 60.6
arahy.Tifrunner.gnm1.ann1.ZQ2A8X Arachis hypogaea HOM05D004903 ORTHO05D005849 3.3e-62 242.3 207 61.4
Gohir.D10G050650 Gossypium hirsutum HOM05D004903 ORTHO05D005849 8.2e-61 237.7 161 72.7
Sabra01G0130700 Salix brachista HOM05D004903 ORTHO05D005849 1.4e-60 236.9 160 72.5
Cc04_g00600 Coffea canephora HOM05D004903 ORTHO05D005849 3.1e-60 235.7 195 60.5
CDE06G0378 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 4.1e-60 235.3 185 60.5
unitig_32.g11002 Utricularia gibba HOM05D004903 ORTHO05D005849 5.3e-60 235.0 195 57.9
SGA_v2.0_scaffold71G23946 Striga asiatica HOM05D004903 ORTHO05D005849 2.0e-59 233.0 194 62.9
Zm00001eb207930 Zea mays HOM05D004903 ORTHO05D005849 3.5e-59 232.3 186 57.0
AUR62025608 Chenopodium quinoa HOM05D004903 ORTHO05D005849 1.7e-58 229.9 173 65.9
Os02g0152600 Oryza sativa ssp. japonica HOM05D004903 ORTHO05D005849 3.8e-58 228.8 195 54.9
CDE04G1042 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 3.2e-57 225.7 185 60.5
Cfa003452 Carpinus fangiana HOM05D004903 ORTHO05D005849 9.8e-54 214.2 120 86.7
ECA234G0009 Erigeron canadensis HOM05D004903 ORTHO05D005849 1.6e-51 206.8 133 72.2
Dinv37814 Davidia involucrata HOM05D004903 ORTHO05D005849 2.9e-50 202.6 120 79.2
Sed0021101 Sechium edule HOM05D004903 ORTHO05D005849 5.4e-44 181.8 130 65.4
Hma1.2p1_0090F.1_g045680 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 2.0e-43 179.9 127 66.1
Gohir.D06G148232 Gossypium hirsutum HOM05D004903 ORTHO05D005849 2.7e-43 179.5 116 74.1
BcaB02g07096 Brassica carinata HOM05D000219 ORTHO05D000226 8.6e-42 174.5 114 75.4
BcaB07g32153 Brassica carinata HOM05D004903 ORTHO05D005849 5.6e-41 171.8 118 72.0
THA.LOC104822767 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 5.6e-41 171.8 191 51.8
Actinidia31143 Actinidia chinensis HOM05D004903 ORTHO05D005849 3.6e-40 169.1 123 66.7
Mapoly0021s0048 Marchantia polymorpha HOM05D004903 ORTHO05D005849 6.4e-37 158.3 187 43.3
AagrBONN_evm.TU.Sc2ySwM_228.2429 Anthoceros agrestis HOM05D004903 ORTHO05D005849 7.8e-35 151.4 140 47.9
CBR_g34164 Chara braunii HOM05D004903 ORTHO05D005849 3.9e-34 149.1 194 38.1
arahy.Tifrunner.gnm1.ann1.AT31DH Arachis hypogaea HOM05D004903 ORTHO05D005849 6.6e-34 148.3 96 75.0
arahy.Tifrunner.gnm1.ann1.RS9BE1 Arachis hypogaea HOM05D004903 ORTHO05D005849 4.3e-33 145.6 96 74.0
Pp3c13_9790 Physcomitrium patens HOM05D004903 ORTHO05D005849 6.0e-27 125.2 159 41.5
Gohir.D02G109866 Gossypium hirsutum HOM05D004903 ORTHO05D005849 1.1e-25 120.9 84 66.7
CDE06G0441 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 1.4e-20 104.0 91 56.0
Haze_16148 Corylus avellana HOM05D003205 ORTHO05D003746 7.1e-20 101.7 105 54.3
SEGI_28585 Sequoiadendron giganteum HOM05D004903 ORTHO05D005849 3.5e-19 99.4 122 41.8
Haze_16144 Corylus avellana HOM05D003205 ORTHO05D003746 4.6e-19 99.0 105 53.3
SEGI_38260 Sequoiadendron giganteum HOM05D004903 ORTHO05D005849 4.6e-19 99.0 131 40.5
Hma1.2p1_0090F.1_g045690 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 1.4e-15 87.4 69 60.9
TPR.G26438 Trifolium pratense HOM05D004903 ORTHO05D005849 1.8e-15 87.0 80 53.8
Cre08.g358557 Chlamydomonas reinhardtii HOM05D004903 ORTHO05D005849 6.8e-15 85.1 188 28.2
PRCOL_00005128 Prasinoderma coloniale HOM05D004903 ORTHO05D005849 1.1e-12 77.8 125 43.2
arahy.Tifrunner.gnm1.ann1.1E2DFU Arachis hypogaea HOM05D001485 ORTHO05D005849 6.6e-10 68.6 49 73.5
MBI17_g12881_MAGBIO Magnolia biondii HOM05D007686 ORTHO05D009709 1.2e-08 64.3 56 57.1
Actinidia21845 Actinidia chinensis HOM05D004903 ORTHO05D005849 1.6e-08 63.9 44 68.2
MCO07G235 Micromonas commoda HOM05D004903 ORTHO05D005849 8.1e-08 61.6 158 27.2
Gorai.012G060300 Gossypium raimondii HOM05D004903 ORTHO05D036089 9.0e-07 58.2 33 84.8
Gohir.D02G078533 Gossypium hirsutum HOM05D004903 ORTHO05D005849 1.2e-06 57.8 41 75.6
Gohir.D04G053733 Gossypium hirsutum HOM05D004903 ORTHO05D036089 1.5e-06 57.4 30 90.0
Gohir.D05G314400 Gossypium hirsutum HOM05D001728 ORTHO05D004321 1.5e-06 57.4 30 90.0
Gohir.D06G112500 Gossypium hirsutum HOM05D004903 ORTHO05D036089 1.5e-06 57.4 30 90.0
Gohir.D07G051800 Gossypium hirsutum HOM05D001728 ORTHO05D004321 1.5e-06 57.4 30 90.0
Gohir.D09G047000 Gossypium hirsutum HOM05D001361 ORTHO05D002529 1.5e-06 57.4 30 90.0
TPR.G14723 Trifolium pratense HOM05D004903 ORTHO05D005849 5.8e-06 55.5 35 80.0
Gohir.D10G160200 Gossypium hirsutum HOM05D001361 ORTHO05D005849 7.6e-06 55.1 30 86.7


User provided reference genes

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