Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc25.199 Carica papaya HOM05D008031 ORTHO05D010063 8.0e-85 317.0 155 100.0
Potri.001G162100 Populus trichocarpa HOM05D008031 ORTHO05D010063 3.5e-40 168.7 164 56.1
Manes.04G151400 Manihot esculenta HOM05D008031 ORTHO05D010063 1.0e-39 167.2 166 57.8
Atru.chr1.4165 Acer truncatum HOM05D008031 ORTHO05D010063 4.0e-36 155.2 167 54.5
Atru.chr1.4161 Acer truncatum HOM05D008031 ORTHO05D010063 7.6e-35 151.0 164 51.2
Potri.003G073200 Populus trichocarpa HOM05D008031 ORTHO05D010063 9.9e-35 150.6 164 51.8
Thecc.06G130800 Theobroma cacao HOM05D008031 ORTHO05D010063 1.6e-32 143.3 165 47.9
COL.COLO4_30875 Corchorus olitorius HOM05D008031 ORTHO05D010063 6.7e-31 137.9 165 48.5
TWI14G1127 Tripterygium wilfordii HOM05D008031 ORTHO05D010063 2.5e-30 136.0 165 47.9
Eucgr.J02592 Eucalyptus grandis HOM05D008031 ORTHO05D010063 3.7e-29 132.1 166 47.6
Gohir.A10G048037 Gossypium hirsutum HOM05D001728 ORTHO05D004321 9.0e-28 127.5 165 45.5
Hma1.2p1_0090F.1_g045750 Hydrangea macrophylla HOM05D008031 ORTHO05D010063 1.2e-27 127.1 167 45.5
Hma1.2p1_2628F.1_g325675 Hydrangea macrophylla HOM05D008031 ORTHO05D010063 1.2e-27 127.1 167 45.5
Actinidia21841 Actinidia chinensis HOM05D008031 ORTHO05D010063 1.5e-27 126.7 168 44.0
Gorai.011G054900 Gossypium raimondii HOM05D001728 ORTHO05D004321 1.5e-27 126.7 165 45.5
Gohir.D10G051032 Gossypium hirsutum HOM05D001728 ORTHO05D004321 2.0e-27 126.3 165 45.5
Lj3g0013752 Lotus japonicus HOM05D008031 ORTHO05D010063 2.6e-27 125.9 166 44.6
QL05p000882 Quercus lobata HOM05D008031 ORTHO05D010063 4.5e-27 125.2 165 46.7
QL05p001111 Quercus lobata HOM05D008031 ORTHO05D010063 4.5e-27 125.2 165 46.7
GSVIVG01016662001 Vitis vinifera HOM05D008031 ORTHO05D010063 5.8e-27 124.8 165 46.7
Ciclev10027015m.g Citrus clementina HOM05D008031 ORTHO05D010063 1.0e-26 124.0 202 43.6
Haze_16140 Corylus avellana HOM05D001728 ORTHO05D004321 4.9e-26 121.7 166 45.2
Glyma.07G046300 Glycine max HOM05D008031 ORTHO05D010063 4.9e-26 121.7 166 44.6
CiPaw.02G130600 Carya illinoinensis HOM05D008031 ORTHO05D010063 6.5e-26 121.3 169 44.4
Phvul.010G122700 Phaseolus vulgaris HOM05D008031 ORTHO05D010063 1.9e-25 119.8 168 43.5
CiPaw.01G211000 Carya illinoinensis HOM05D008031 ORTHO05D010063 9.3e-25 117.5 169 44.4
Actinidia24421 Actinidia chinensis HOM05D001728 ORTHO05D004321 1.6e-24 116.7 168 44.0
Cfa003457 Carpinus fangiana HOM05D008031 ORTHO05D010063 1.6e-24 116.7 166 42.2
TAR626G1534 Trochodendron aralioides HOM05D008031 ORTHO05D010063 2.7e-24 115.9 166 44.0
Rhsim08G0245200 Rhododendron simsii HOM05D008031 ORTHO05D010063 1.0e-23 114.0 165 43.0
Lalb_Chr10g0101091 Lupinus albus HOM05D008031 ORTHO05D010063 3.9e-23 112.1 165 42.4
VMungo0331G1222 Vigna mungo HOM05D008031 ORTHO05D010063 5.1e-23 111.7 168 42.3
Prupe.3G030600 Prunus persica HOM05D008031 ORTHO05D010063 1.9e-22 109.8 164 42.1
MBI19_g32875_MAGBIO Magnolia biondii HOM05D008031 ORTHO05D010063 2.5e-22 109.4 168 44.6
Medtr8g023390 Medicago truncatula HOM05D008031 ORTHO05D010063 4.3e-22 108.6 168 42.9
PGR102G3014 Punica granatum HOM05D008031 ORTHO05D010063 4.3e-22 108.6 162 42.0
FvH4_6g35970 Fragaria vesca HOM05D008031 ORTHO05D010063 7.4e-22 107.8 163 42.9
FAN09G4453 Fragaria x ananassa HOM05D008031 ORTHO05D010063 7.4e-22 107.8 163 42.9
FAN14G4753 Fragaria x ananassa HOM05D008031 ORTHO05D010063 7.4e-22 107.8 163 42.9
Oeu019510.1 Olea europaea HOM05D008031 ORTHO05D010063 7.4e-22 107.8 164 40.9
CSS0025062 Camellia sinensis var. sinensis HOM05D001728 ORTHO05D004321 2.1e-21 106.3 164 42.7
FAN02G3240 Fragaria x ananassa HOM05D008031 ORTHO05D010063 1.1e-20 104.0 166 41.0
FAN05G2192 Fragaria x ananassa HOM05D008031 ORTHO05D010063 1.1e-20 104.0 163 42.3
Glyma.16G014500 Glycine max HOM05D008031 ORTHO05D010063 1.1e-20 104.0 166 40.4
Duzib235G0155 Durio zibethinus HOM05D008031 ORTHO05D010063 1.8e-20 103.2 137 43.1
Peaxi162Scf00038g02327 Petunia axillaris HOM05D008031 ORTHO05D010063 1.8e-20 103.2 170 41.2
Migut.I01137 Erythranthe guttata HOM05D008031 ORTHO05D010063 2.4e-20 102.8 169 43.2
Sed0024761 Sechium edule HOM05D008031 ORTHO05D010063 9.0e-20 100.9 145 42.1
arahy.Tifrunner.gnm1.ann1.PVL51W Arachis hypogaea HOM05D008031 ORTHO05D010063 1.5e-19 100.1 174 41.4
ClCG07G014260 Citrullus lanatus HOM05D008031 ORTHO05D010063 2.6e-19 99.4 162 38.3
arahy.Tifrunner.gnm1.ann1.8JA41T Arachis hypogaea HOM05D008031 ORTHO05D010063 4.5e-19 98.6 177 40.1
arahy.Tifrunner.gnm1.ann1.CKB8X1 Arachis hypogaea HOM05D008031 ORTHO05D010063 1.3e-18 97.1 177 39.5
TPR.G29474 Trifolium pratense HOM05D008031 ORTHO05D010063 1.3e-18 97.1 171 39.8
MD09G1172200 Malus domestica HOM05D008031 ORTHO05D010063 1.7e-18 96.7 142 42.3
PGSC0003DMG400009151 Solanum tuberosum HOM05D008031 ORTHO05D010063 1.7e-18 96.7 170 39.4
CsaV3_3G031060 Cucumis sativus L. HOM05D008031 ORTHO05D010063 2.2e-18 96.3 163 36.8
RcHm_v2.0_Chr2g0148091 Rosa chinensis HOM05D008031 ORTHO05D010063 2.2e-18 96.3 164 40.2
Dinv20378 Davidia involucrata HOM05D001728 ORTHO05D004321 8.4e-18 94.4 103 53.4
MELO3C022708.2 Cucumis melo HOM05D008031 ORTHO05D010063 1.9e-17 93.2 162 37.7
Sopen03g041440 Solanum pennellii HOM05D008031 ORTHO05D010063 7.1e-17 91.3 170 38.2
Solyc03g123670.3 Solanum lycopersicum HOM05D008031 ORTHO05D010063 9.3e-17 90.9 170 38.8
SGA_v2.0_scaffold71G23934 Striga asiatica HOM05D008031 ORTHO05D010063 9.3e-17 90.9 163 38.0
Nitab4.5_0006338g0010 Nicotiana tabacum HOM05D008031 ORTHO05D010063 1.2e-16 90.5 171 38.6
Oeu053417.1 Olea europaea HOM05D008031 ORTHO05D010063 1.6e-16 90.1 166 38.6
CANSAT56G3277 Cannabis sativa HOM05D008031 ORTHO05D010063 2.7e-16 89.4 168 35.1
MD17G1154700 Malus domestica HOM05D008031 ORTHO05D010063 3.5e-16 89.0 142 43.0
Ah.08g217400 Amaranthus hybridus HOM05D008031 ORTHO05D010063 6.1e-16 88.2 153 39.2
Eucgr.I02164 Eucalyptus grandis HOM05D008031 ORTHO05D010063 1.0e-15 87.4 151 40.4
Aqoxy7G04192 Aquilegia oxysepala HOM05D008031 ORTHO05D010063 3.9e-15 85.5 172 37.8
Cc04_g00650 Coffea canephora HOM05D008031 ORTHO05D010063 5.1e-15 85.1 169 37.9
DCAR_022641 Daucus carota HOM05D008031 ORTHO05D010063 6.7e-15 84.7 170 41.8
Lsat_1_v5_gn_4_90600 Lactuca sativa HOM05D008031 ORTHO05D010063 5.7e-14 81.6 143 40.6
Oeu015468.1 Olea europaea HOM05D008031 ORTHO05D010063 1.6e-13 80.1 161 36.6
Nitab4.5_0006966g0010 Nicotiana tabacum HOM05D008031 ORTHO05D010063 4.1e-12 75.5 162 34.6
Hund18631 Selenicereus undatus HOM05D008031 ORTHO05D010063 6.9e-12 74.7 160 39.4
SalBow6G0345 Salvia bowleyana HOM05D008031 ORTHO05D010063 1.9e-09 66.6 152 33.6
MBI18_g04556_MAGBIO Magnolia biondii HOM05D005099 ORTHO05D006087 4.2e-09 65.5 169 33.1
CSS0011820 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 9.4e-09 64.3 173 31.8
SEGI_30103 Sequoiadendron giganteum HOM05D036824 ORTHO05D010063 9.4e-09 64.3 167 32.9
SEGI_39614 Sequoiadendron giganteum HOM05D036824 ORTHO05D010063 9.4e-09 64.3 167 32.9
ATR0693G064 Amborella trichopoda HOM05D005099 ORTHO05D006087 3.6e-08 62.4 165 29.7
MSTRG.9544 Avicennia marina HOM05D008031 ORTHO05D010063 4.6e-08 62.0 142 38.7
AT3G06840 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 6.1e-08 61.6 184 26.6
Rhsim02G0007200 Rhododendron simsii HOM05D005099 ORTHO05D006087 1.4e-07 60.5 174 31.6
CiPaw.02G080200 Carya illinoinensis HOM05D005099 ORTHO05D006087 2.3e-07 59.7 183 30.1
HanXRQChr17g0536041 Helianthus annuus HOM05D005099 ORTHO05D006087 2.3e-07 59.7 181 32.0
TAR365G0602 Trochodendron aralioides HOM05D005099 ORTHO05D006087 3.9e-07 58.9 189 29.6
Actinidia14282 Actinidia chinensis HOM05D005099 ORTHO05D006087 8.8e-07 57.8 181 29.8
CANSAT78G2455 Cannabis sativa HOM05D005099 ORTHO05D006087 1.1e-06 57.4 192 30.7
Duzib212G0134 Durio zibethinus HOM05D005099 ORTHO05D006087 1.1e-06 57.4 181 29.8
AL3G17960 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 1.5e-06 57.0 174 27.6
CiPaw.01G145600 Carya illinoinensis HOM05D005099 ORTHO05D006087 1.5e-06 57.0 182 29.7
Haze_01169 Corylus avellana HOM05D005099 ORTHO05D006087 1.5e-06 57.0 175 32.0
Thecc.04G288600 Theobroma cacao HOM05D005099 ORTHO05D006087 1.5e-06 57.0 187 28.9
TAR362G0212 Trochodendron aralioides HOM05D005099 ORTHO05D006087 1.5e-06 57.0 183 31.7
Ciclev10006010m.g Citrus clementina HOM05D005099 ORTHO05D006087 2.0e-06 56.6 180 28.9
Hma1.2p1_0804F.1_g221070 Hydrangea macrophylla HOM05D005099 ORTHO05D006087 2.0e-06 56.6 181 29.8
SalBow2G2334 Salvia bowleyana HOM05D005099 ORTHO05D006087 2.5e-06 56.2 176 29.5
Oeu006417.1 Olea europaea HOM05D005099 ORTHO05D006087 4.3e-06 55.5 177 27.1
Cfa015424 Carpinus fangiana HOM05D005099 ORTHO05D006087 5.7e-06 55.1 179 33.0
CDE05G1539 Ceratophyllum demersum HOM05D008031 ORTHO05D010063 5.7e-06 55.1 172 30.2
CsaV3_6G023860 Cucumis sativus L. HOM05D005099 ORTHO05D006087 7.4e-06 54.7 192 32.8
Manes.03G198300 Manihot esculenta HOM05D005099 ORTHO05D006087 7.4e-06 54.7 176 30.1
vmacro15214 Vaccinium macrocarpon HOM05D005099 ORTHO05D006087 9.7e-06 54.3 159 30.8


User provided reference genes

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