Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc25.187 Carica papaya HOM05D005200 ORTHO05D005760 3.5e-45 184.5 87 100.0
Sabra01G0129600 Salix brachista HOM05D005200 ORTHO05D005760 2.1e-29 132.1 88 64.8
Manes.11G013000 Manihot esculenta HOM05D005200 ORTHO05D005760 2.3e-28 128.6 88 69.3
Duzib160G0856 Durio zibethinus HOM05D005200 ORTHO05D005760 1.9e-27 125.6 88 67.0
Manes.04G150600 Manihot esculenta HOM05D005200 ORTHO05D005760 5.6e-27 124.0 89 67.4
Potri.001G163100 Populus trichocarpa HOM05D005200 ORTHO05D005760 2.8e-26 121.7 88 63.6
COL.COLO4_30860 Corchorus olitorius HOM05D005200 ORTHO05D005760 1.2e-24 116.3 85 62.4
Ciclev10026732m.g Citrus clementina HOM05D005200 ORTHO05D005760 1.5e-24 115.9 88 61.4
Thecc.06G129700 Theobroma cacao HOM05D005200 ORTHO05D005760 2.6e-24 115.2 87 62.1
Potri.003G072400 Populus trichocarpa HOM05D005200 ORTHO05D005760 3.4e-24 114.8 85 62.4
Duzib235G1369 Durio zibethinus HOM05D005200 ORTHO05D005760 4.4e-24 114.4 77 71.4
Dinv20386 Davidia involucrata HOM05D005200 ORTHO05D005760 2.9e-23 111.7 88 63.6
Dinv37821 Davidia involucrata HOM05D005200 ORTHO05D005760 4.9e-23 110.9 86 64.0
CiPaw.01G211800 Carya illinoinensis HOM05D005200 ORTHO05D005760 1.4e-22 109.4 87 63.2
Gorai.011G055500 Gossypium raimondii HOM05D005200 ORTHO05D005760 2.4e-22 108.6 76 65.8
Gohir.A10G047648 Gossypium hirsutum HOM05D005200 ORTHO05D005760 5.4e-22 107.5 76 65.8
GSVIVG01016673001 Vitis vinifera HOM05D005200 ORTHO05D005760 5.4e-22 107.5 88 56.8
Gohir.A06G143500 Gossypium hirsutum HOM05D005200 ORTHO05D005760 7.1e-22 107.1 77 63.6
Gohir.D10G051950 Gossypium hirsutum HOM05D005200 ORTHO05D005760 7.1e-22 107.1 75 65.3
CiPaw.02G131300 Carya illinoinensis HOM05D005200 ORTHO05D005760 1.6e-21 105.9 88 59.1
Sabra03G0043200 Salix brachista HOM05D005200 ORTHO05D005760 2.1e-21 105.5 86 59.3
Gorai.010G173300 Gossypium raimondii HOM05D005200 ORTHO05D005760 6.0e-21 104.0 77 63.6
CANSAT56G3023 Cannabis sativa HOM05D005200 ORTHO05D005760 7.8e-21 103.6 84 60.7
Glyma.16G013600 Glycine max HOM05D005200 ORTHO05D005760 1.3e-20 102.8 81 56.8
arahy.Tifrunner.gnm1.ann1.56RDUW Arachis hypogaea HOM05D005200 ORTHO05D005760 3.0e-20 101.7 86 53.5
Gohir.A09G075600 Gossypium hirsutum HOM05D005200 ORTHO05D005760 3.9e-20 101.3 85 58.8
arahy.Tifrunner.gnm1.ann1.KXG0W2 Arachis hypogaea HOM05D005200 ORTHO05D005760 5.1e-20 100.9 86 53.5
VMungo0331G0914 Vigna mungo HOM05D005200 ORTHO05D005760 5.1e-20 100.9 81 56.8
Cfa003464 Carpinus fangiana HOM05D005200 ORTHO05D005760 1.1e-19 99.8 87 58.6
Gohir.D09G075300 Gossypium hirsutum HOM05D005200 ORTHO05D005760 1.5e-19 99.4 85 57.6
Gorai.006G090400 Gossypium raimondii HOM05D005200 ORTHO05D005760 1.5e-19 99.4 85 57.6
Atru.chr1.4140 Acer truncatum HOM05D005200 ORTHO05D005760 2.5e-19 98.6 91 56.0
Eucgr.I02161 Eucalyptus grandis HOM05D005200 ORTHO05D005760 3.3e-19 98.2 88 53.4
Sed0021338 Sechium edule HOM05D005200 ORTHO05D005760 3.3e-19 98.2 89 57.3
TWI23G1266 Tripterygium wilfordii HOM05D005200 ORTHO05D005760 3.3e-19 98.2 87 54.0
Haze_16132 Corylus avellana HOM05D005200 ORTHO05D005760 9.5e-19 96.7 87 57.5
QL05p001275 Quercus lobata HOM05D005200 ORTHO05D005760 1.2e-18 96.3 88 59.1
MELO3C024308.2 Cucumis melo HOM05D005200 ORTHO05D005760 2.1e-18 95.5 88 53.4
Phvul.010G123400 Phaseolus vulgaris HOM05D005200 ORTHO05D005760 2.1e-18 95.5 81 53.1
MD09G1173200 Malus domestica HOM05D005200 ORTHO05D005760 3.6e-18 94.7 87 54.0
TAR626G1734 Trochodendron aralioides HOM05D005200 ORTHO05D005760 6.2e-18 94.0 86 53.5
CsaV3_7G033950 Cucumis sativus L. HOM05D005200 ORTHO05D005760 8.1e-18 93.6 87 50.6
Lalb_Chr10g0101121 Lupinus albus HOM05D005200 ORTHO05D005760 8.1e-18 93.6 78 52.6
Lj1g0005720 Lotus japonicus HOM05D005200 ORTHO05D005760 2.4e-17 92.0 95 48.4
Actinidia31148 Actinidia chinensis HOM05D005200 ORTHO05D005760 4.0e-17 91.3 83 53.0
RcHm_v2.0_Chr2g0147821 Rosa chinensis HOM05D005200 ORTHO05D005760 6.8e-17 90.5 88 53.4
Actinidia26000 Actinidia chinensis HOM05D005200 ORTHO05D005760 1.5e-16 89.4 84 50.0
THA.LOC104815599 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 3.4e-16 88.2 86 46.5
Glyma.19G262400 Glycine max HOM05D005200 ORTHO05D005760 4.4e-16 87.8 87 51.7
Phvul.009G261901 Phaseolus vulgaris HOM05D005200 ORTHO05D005760 5.8e-16 87.4 84 50.0
ClCG09G001380 Citrullus lanatus HOM05D005200 ORTHO05D005760 1.3e-15 86.3 85 48.2
Lalb_Chr15g0076711 Lupinus albus HOM05D005200 ORTHO05D005760 1.3e-15 86.3 88 46.6
TWI14G0574 Tripterygium wilfordii HOM05D005200 ORTHO05D005760 2.2e-15 85.5 61 60.7
arahy.Tifrunner.gnm1.ann1.F1PVR5 Arachis hypogaea HOM05D005200 ORTHO05D005760 3.8e-15 84.7 90 48.9
arahy.Tifrunner.gnm1.ann1.7PP1M3 Arachis hypogaea HOM05D005200 ORTHO05D005760 4.9e-15 84.3 91 48.4
THA.LOC104822615 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 6.4e-15 84.0 89 46.1
Lalb_Chr04g0261221 Lupinus albus HOM05D005200 ORTHO05D005760 8.4e-15 83.6 87 43.7
Prupe.3G031300 Prunus persica HOM05D005200 ORTHO05D005760 8.4e-15 83.6 88 54.5
Glyma.03G263400 Glycine max HOM05D005200 ORTHO05D005760 1.4e-14 82.8 87 49.4
Nitab4.5_0008798g0020 Nicotiana tabacum HOM05D005200 ORTHO05D005760 1.9e-14 82.4 64 60.9
Actinidia21832 Actinidia chinensis HOM05D005200 ORTHO05D005760 2.4e-14 82.0 59 61.0
PSO135G0283 Papaver somniferum HOM05D005200 ORTHO05D005760 2.4e-14 82.0 86 40.7
FAN02G2923 Fragaria x ananassa HOM05D005200 ORTHO05D005760 3.2e-14 81.6 88 50.0
FAN14G3672 Fragaria x ananassa HOM05D005200 ORTHO05D005760 3.2e-14 81.6 88 50.0
THA.LOC104810392 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 3.2e-14 81.6 90 44.4
FvH4_6g35780 Fragaria vesca HOM05D005200 ORTHO05D005760 4.2e-14 81.3 88 50.0
FAN09G2652 Fragaria x ananassa HOM05D005200 ORTHO05D005760 4.2e-14 81.3 88 50.0
FAN14G2768 Fragaria x ananassa HOM05D005200 ORTHO05D005760 4.2e-14 81.3 88 50.0
Glyma.07G045700 Glycine max HOM05D005200 ORTHO05D005760 4.2e-14 81.3 81 49.4
Rhsim08G0244400 Rhododendron simsii HOM05D005200 ORTHO05D005760 5.4e-14 80.9 61 59.0
VMungo1309G1714 Vigna mungo HOM05D005200 ORTHO05D005760 5.4e-14 80.9 87 48.3
Nn6g35724 Nelumbo nucifera HOM05D005200 ORTHO05D005760 9.2e-14 80.1 90 44.4
MD17G1154100 Malus domestica HOM05D005200 ORTHO05D005760 1.2e-13 79.7 86 51.2
TPR.G18172 Trifolium pratense HOM05D005200 ORTHO05D005760 1.2e-13 79.7 76 46.1
Lj3g0024707 Lotus japonicus HOM05D005200 ORTHO05D005760 1.6e-13 79.3 92 46.7
AT3G14280 Arabidopsis thaliana HOM05D005200 ORTHO05D005760 3.5e-13 78.2 87 43.7
FAN05G3446 Fragaria x ananassa HOM05D005200 ORTHO05D005760 3.5e-13 78.2 88 50.0
Migut.I01128 Erythranthe guttata HOM05D005200 ORTHO05D005760 4.6e-13 77.8 92 45.7
Oeu008400.1 Olea europaea HOM05D005200 ORTHO05D005760 6.0e-13 77.4 84 47.6
Aa31LG8G1550 Aethionema arabicum HOM05D005200 ORTHO05D005760 7.8e-13 77.0 60 55.0
PGSC0003DMG400009175 Solanum tuberosum HOM05D005200 ORTHO05D005760 7.8e-13 77.0 64 51.6
vmacro15084 Vaccinium macrocarpon HOM05D005200 ORTHO05D005760 7.8e-13 77.0 88 50.0
PGR119G0182 Punica granatum HOM05D005200 ORTHO05D005760 1.0e-12 76.6 82 46.3
MSTRG.10915 Avicennia marina HOM05D005200 ORTHO05D005760 1.3e-12 76.3 80 47.5
MSTRG.4536 Avicennia marina HOM05D005200 ORTHO05D005760 1.3e-12 76.3 82 50.0
AL3G26600 Arabidopsis lyrata HOM05D005200 ORTHO05D005760 2.3e-12 75.5 87 42.5
SalBow7G2254 Salvia bowleyana HOM05D005200 ORTHO05D005760 2.3e-12 75.5 59 50.8
ECA234G4728 Erigeron canadensis HOM05D005200 ORTHO05D005760 3.0e-12 75.1 65 53.8
Sopen12g024150 Solanum pennellii HOM05D005200 ORTHO05D005760 3.9e-12 74.7 59 54.2
Peaxi162Scf00038g02243 Petunia axillaris HOM05D005200 ORTHO05D005760 5.1e-12 74.3 66 48.5
Cc04_g00760 Coffea canephora HOM05D005200 ORTHO05D005760 6.6e-12 73.9 60 51.7
PGSC0003DMG402028848 Solanum tuberosum HOM05D005200 ORTHO05D005760 6.6e-12 73.9 59 55.9
Solyc12g055700.3 Solanum lycopersicum HOM05D005200 ORTHO05D005760 8.7e-12 73.6 59 54.2
Lsat_1_v5_gn_5_137940 Lactuca sativa HOM05D005200 ORTHO05D005760 1.1e-11 73.2 64 53.1
CARHR089210 Cardamine hirsuta HOM05D005200 ORTHO05D005760 1.5e-11 72.8 88 43.2
BraA05t22323Z Brassica rapa HOM05D005200 ORTHO05D005760 1.9e-11 72.4 57 57.9
Aqoxy7G04178 Aquilegia oxysepala HOM05D005200 ORTHO05D005760 2.5e-11 72.0 83 44.6
Carub.0003s1397 Capsella rubella HOM05D005200 ORTHO05D005760 2.5e-11 72.0 87 42.5
Thhalv10021716m.g Eutrema salsugineum HOM05D005200 ORTHO05D005760 2.5e-11 72.0 59 54.2
HanXRQChr09g0277231 Helianthus annuus HOM05D005200 ORTHO05D005760 2.5e-11 72.0 63 52.4
Lsat_1_v5_gn_4_92221 Lactuca sativa HOM05D005200 ORTHO05D005760 2.5e-11 72.0 62 54.8
HanXRQChr10g0311991 Helianthus annuus HOM05D005200 ORTHO05D005760 3.3e-11 71.6 65 50.8
A05p35100 Brassica napus HOM05D005200 ORTHO05D005760 5.6e-11 70.9 57 56.1
SalBow6G5493 Salvia bowleyana HOM05D005200 ORTHO05D005760 5.6e-11 70.9 60 58.3
BcaB04g18835 Brassica carinata HOM05D005200 ORTHO05D005760 7.3e-11 70.5 57 56.1
AUR62001409 Chenopodium quinoa HOM05D000001 ORTHO05D009753 7.3e-11 70.5 67 53.7
Sp3g12570 Schrenkiella parvula HOM05D005200 ORTHO05D005760 9.6e-11 70.1 57 56.1
Lalb_Chr17g0343251 Lupinus albus HOM05D005200 ORTHO05D005760 1.3e-10 69.7 81 45.7
Medtr7g117550 Medicago truncatula HOM05D005200 ORTHO05D005760 1.6e-10 69.3 65 49.2
AUR62025618 Chenopodium quinoa HOM05D000001 ORTHO05D009753 2.1e-10 68.9 67 53.7
BcaC05g29096 Brassica carinata HOM05D005200 ORTHO05D005760 2.8e-10 68.6 57 56.1
C05p53060 Brassica napus HOM05D005200 ORTHO05D005760 2.8e-10 68.6 57 56.1
BolC5t33987H Brassica oleracea HOM05D005200 ORTHO05D005760 2.8e-10 68.6 57 56.1
A01p39430 Brassica napus HOM05D005200 ORTHO05D005760 3.6e-10 68.2 91 45.1
BraA01t03983Z Brassica rapa HOM05D005200 ORTHO05D005760 3.6e-10 68.2 58 56.9
HanXRQChr12g0360121 Helianthus annuus HOM05D005200 ORTHO05D005760 3.6e-10 68.2 64 46.9
MBI19_g32869_MAGBIO Magnolia biondii HOM05D005200 ORTHO05D005760 3.6e-10 68.2 66 57.6
Oeu015475.1 Olea europaea HOM05D005200 ORTHO05D005760 4.8e-10 67.8 50 58.0
ATR0099G034 Amborella trichopoda HOM05D005200 ORTHO05D005760 8.1e-10 67.0 60 51.7
BcaB06g25397 Brassica carinata HOM05D005200 ORTHO05D005760 8.1e-10 67.0 57 56.1
BcaC09g48397 Brassica carinata HOM05D005200 ORTHO05D005760 8.1e-10 67.0 58 56.9
C01p50260 Brassica napus HOM05D005200 ORTHO05D005760 8.1e-10 67.0 58 56.9
BolC1t04981H Brassica oleracea HOM05D005200 ORTHO05D005760 8.1e-10 67.0 58 56.9
Medtr8g023100 Medicago truncatula HOM05D005200 ORTHO05D005760 1.1e-09 66.6 76 40.8
Solyc03g123580.4 Solanum lycopersicum HOM05D005200 ORTHO05D005760 1.1e-09 66.6 53 56.6
Sopen03g041350 Solanum pennellii HOM05D005200 ORTHO05D005760 1.1e-09 66.6 53 56.6
Gohir.D06G148800 Gossypium hirsutum HOM05D005200 ORTHO05D005760 1.8e-09 65.9 37 73.0
DCAR_007659 Daucus carota HOM05D005200 ORTHO05D005760 2.6e-08 62.0 59 45.8
Hund18641 Selenicereus undatus HOM05D005200 ORTHO05D005760 1.3e-07 59.7 87 40.2
ClCG07G014310 Citrullus lanatus HOM05D005200 ORTHO05D005760 3.8e-07 58.2 84 40.5
SGA_v2.0_scaffold71G23919 Striga asiatica HOM05D005200 ORTHO05D005760 3.8e-07 58.2 47 53.2
Ah.15g094950 Amaranthus hybridus HOM05D005200 ORTHO05D005760 6.4e-07 57.4 87 39.1
Pp3c22_2900 Physcomitrium patens HOM05D023101 ORTHO05D005760 6.4e-07 57.4 31 67.7
HPP92_005865 Vanilla planifolia HOM05D005200 ORTHO05D005760 6.4e-07 57.4 30 66.7
Zm00001eb278460 Zea mays HOM05D005200 ORTHO05D005760 8.4e-07 57.0 29 75.9
Os06g0193300 Oryza sativa ssp. japonica HOM05D005200 ORTHO05D005760 1.4e-06 56.2 29 75.9
Pp3c19_6810 Physcomitrium patens HOM05D023101 ORTHO05D005760 1.9e-06 55.8 31 67.7
Os10g0390701 Oryza sativa ssp. japonica HOM05D005200 ORTHO05D005760 2.4e-06 55.5 29 72.4
Ah.08g217360 Amaranthus hybridus HOM05D005200 ORTHO05D005760 3.2e-06 55.1 89 34.8
Psat4g165560 Pisum sativum HOM05D005200 ORTHO05D005760 5.4e-06 54.3 41 51.2
AagrBONN_evm.TU.Sc2ySwM_228.2768 Anthoceros agrestis HOM05D005200 ORTHO05D005760 9.3e-06 53.5 30 70.0
Os02g0782900 Oryza sativa ssp. japonica HOM05D005200 ORTHO05D005760 9.3e-06 53.5 29 65.5
Pp3c12_6700 Physcomitrium patens HOM05D023101 ORTHO05D005760 9.3e-06 53.5 83 33.7


User provided reference genes

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