Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc25.173 Carica papaya HOM05D005068 ORTHO05D007561 0.0e+00 1993.8 1071 100.0
Manes.09G018800 Manihot esculenta HOM05D005068 ORTHO05D007561 0.0e+00 1140.9 1104 61.8
CiPaw.01G213900 Carya illinoinensis HOM05D005068 ORTHO05D007561 0.0e+00 1133.6 1087 61.6
CSS0009347 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 0.0e+00 1100.9 1084 59.5
CSS0048439 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 0.0e+00 1099.0 1084 59.4
THA.LOC104808063 Tarenaya hassleriana HOM05D005068 ORTHO05D007561 0.0e+00 1088.9 1085 61.9
QL05p001958 Quercus lobata HOM05D005068 ORTHO05D007561 0.0e+00 1085.9 1099 60.0
Gohir.D10G053200 Gossypium hirsutum HOM05D005068 ORTHO05D007561 0.0e+00 1082.4 1086 60.0
Gorai.011G056800 Gossypium raimondii HOM05D005068 ORTHO05D007561 0.0e+00 1081.6 1086 60.0
Potri.001G164100 Populus trichocarpa HOM05D005068 ORTHO05D007561 0.0e+00 1075.8 1065 60.7
TAR628G1511 Trochodendron aralioides HOM05D005068 ORTHO05D007561 0.0e+00 1075.1 1078 59.8
MD09G1175700 Malus domestica HOM05D005068 ORTHO05D007561 7.3e-310 1067.4 1122 56.8
GSVIVG01016696001 Vitis vinifera HOM05D005068 ORTHO05D007561 6.1e-309 1064.3 1093 59.2
Cfa003490 Carpinus fangiana HOM05D005068 ORTHO05D007561 1.8e-308 1062.8 1091 59.5
MD17G1151100 Malus domestica HOM05D005068 ORTHO05D007561 1.8e-308 1062.8 1099 57.2
Sed0003275 Sechium edule HOM05D005068 ORTHO05D007561 5.2e-308 1061.2 1067 60.0
Sed0017975 Sechium edule HOM05D005068 ORTHO05D007561 3.7e-306 1055.0 1055 58.8
Ciclev10024779m.g Citrus clementina HOM05D005068 ORTHO05D007561 5.0e-303 1044.6 1095 58.8
Gohir.A10G051500 Gossypium hirsutum HOM05D005068 ORTHO05D007561 9.5e-302 1040.4 1088 59.7
MELO3C024322.2 Cucumis melo HOM05D005068 ORTHO05D007561 2.3e-300 1035.8 1065 59.8
AT1G72440 Arabidopsis thaliana HOM05D005068 ORTHO05D007561 5.2e-300 1034.6 1054 58.0
CsaV3_7G034120 Cucumis sativus L. HOM05D005068 ORTHO05D007561 6.8e-300 1034.2 1065 59.2
Sp5g27520 Schrenkiella parvula HOM05D005068 ORTHO05D007561 2.0e-299 1032.7 1069 58.3
Phvul.010G125200 Phaseolus vulgaris HOM05D005068 ORTHO05D007561 3.4e-299 1031.9 1081 57.6
Prupe.3G034700 Prunus persica HOM05D005068 ORTHO05D007561 4.4e-299 1031.6 1086 56.7
TWI59G1220 Tripterygium wilfordii HOM05D005068 ORTHO05D007561 4.4e-299 1031.6 1109 57.1
Thecc.06G127400 Theobroma cacao HOM05D005068 ORTHO05D007561 4.1e-297 1025.0 1091 58.8
Atru.chr1.4129 Acer truncatum HOM05D005068 ORTHO05D007561 5.4e-297 1024.6 1090 56.1
Glyma.07G043700 Glycine max HOM05D005068 ORTHO05D007561 7.8e-296 1020.8 1087 56.9
RcHm_v2.0_Chr2g0147011 Rosa chinensis HOM05D005068 ORTHO05D007561 1.7e-295 1019.6 1070 56.8
arahy.Tifrunner.gnm1.ann1.JS5XG8 Arachis hypogaea HOM05D005068 ORTHO05D007561 3.9e-295 1018.5 1094 56.4
AL2G32110 Arabidopsis lyrata HOM05D005068 ORTHO05D007561 1.5e-294 1016.5 990 59.6
Oeu000383.1 Olea europaea HOM05D005068 ORTHO05D007561 1.5e-294 1016.5 1066 57.2
VMungo0331G1431 Vigna mungo HOM05D005068 ORTHO05D007561 1.9e-294 1016.1 1073 57.5
FAN05G3041 Fragaria x ananassa HOM05D005068 ORTHO05D007561 4.3e-294 1015.0 1070 56.8
Psat2g016360 Pisum sativum HOM05D005068 ORTHO05D007561 1.4e-292 1010.0 1104 56.1
Carub.0002s1929 Capsella rubella HOM05D005068 ORTHO05D007561 1.8e-292 1009.6 946 61.5
Eucgr.J02606 Eucalyptus grandis HOM05D005068 ORTHO05D007561 5.2e-292 1008.1 1094 57.7
C06p46800 Brassica napus HOM05D005068 ORTHO05D007561 1.2e-291 1006.9 1052 59.0
Solyc03g123530.4 Solanum lycopersicum HOM05D005068 ORTHO05D007561 2.6e-291 1005.7 1050 56.2
FAN14G5424 Fragaria x ananassa HOM05D005068 ORTHO05D007561 3.4e-291 1005.4 1090 56.2
PGR102G2847 Punica granatum HOM05D005068 ORTHO05D007561 7.5e-291 1004.2 1063 57.8
FvH4_6g35460 Fragaria vesca HOM05D005068 ORTHO05D007561 9.8e-291 1003.8 1071 56.4
CANSAT01G1537 Cannabis sativa HOM05D005068 ORTHO05D007561 1.3e-290 1003.4 1087 56.8
Hund18654 Selenicereus undatus HOM05D005068 ORTHO05D007561 1.3e-290 1003.4 1104 56.1
Haze_16103 Corylus avellana HOM05D005068 ORTHO05D007561 6.4e-290 1001.1 1217 53.6
Aqoxy1G00349 Aquilegia oxysepala HOM05D005068 ORTHO05D007561 1.4e-289 1000.0 1068 56.0
Sabra01G0128700 Salix brachista HOM05D005068 ORTHO05D007561 1.9e-289 999.6 1062 57.2
BolC6t39723H Brassica oleracea HOM05D005068 ORTHO05D007561 3.2e-289 998.8 1062 58.5
CARHR065370 Cardamine hirsuta HOM05D005068 ORTHO05D007561 6.0e-288 994.6 1057 57.5
Thhalv10018056m.g Eutrema salsugineum HOM05D005068 ORTHO05D007561 5.0e-287 991.5 1048 57.7
Lj3g0023295 Lotus japonicus HOM05D005068 ORTHO05D007561 5.0e-287 991.5 1089 55.1
Medtr4g119670 Medicago truncatula HOM05D005068 ORTHO05D007561 9.5e-286 987.3 1060 55.5
Lalb_Chr04g0253821 Lupinus albus HOM05D005068 ORTHO05D007561 5.2e-284 981.5 1020 57.3
Medtr5g019130 Medicago truncatula HOM05D005068 ORTHO05D007561 1.5e-283 979.9 1071 54.7
CAN.G790.67 Capsicum annuum HOM05D005068 ORTHO05D007561 5.8e-283 978.0 1059 55.7
PSO384G5027 Papaver somniferum HOM05D005068 ORTHO05D007561 1.3e-282 976.9 1101 54.3
BcaC08g46695 Brassica carinata HOM05D005068 ORTHO05D007561 1.9e-281 973.0 1054 57.4
Peaxi162Scf00038g02247 Petunia axillaris HOM05D005068 ORTHO05D007561 9.2e-281 970.7 1068 55.7
ClCG09G001250 Citrullus lanatus HOM05D005068 ORTHO05D007561 3.5e-280 968.8 1076 56.8
Cc04_g00890 Coffea canephora HOM05D005068 ORTHO05D007561 3.0e-279 965.7 1080 54.4
BcaB03g14995 Brassica carinata HOM05D005068 ORTHO05D007561 8.6e-279 964.1 1055 56.8
PSO339G5314 Papaver somniferum HOM05D005068 ORTHO05D007561 2.1e-277 959.5 1100 54.5
Lsat_1_v5_gn_5_136720 Lactuca sativa HOM05D005068 ORTHO05D007561 4.7e-277 958.4 1052 55.5
Ca_23422_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 4.4e-275 951.8 1075 54.2
Nitab4.5_0003981g0040 Nicotiana tabacum HOM05D005068 ORTHO05D007561 4.4e-275 951.8 1079 53.9
TPR.G16658 Trifolium pratense HOM05D005068 ORTHO05D007561 2.2e-274 949.5 1116 53.0
MSTRG.22527 Avicennia marina HOM05D005068 ORTHO05D007561 4.9e-274 948.3 1078 54.5
ECA234G0903 Erigeron canadensis HOM05D005068 ORTHO05D007561 4.9e-274 948.3 1044 54.9
Aa31LG4G2770 Aethionema arabicum HOM05D005068 ORTHO05D007561 2.4e-273 946.0 1065 55.0
EL10Ac7g16459 Beta vulgaris HOM05D005068 ORTHO05D007561 3.2e-273 945.7 1104 52.5
Sopen03g041300 Solanum pennellii HOM05D005068 ORTHO05D007561 7.1e-273 944.5 1061 53.9
SalBow6G5915 Salvia bowleyana HOM05D005068 ORTHO05D007561 2.1e-272 943.0 1072 54.2
HanXRQChr12g0360151 Helianthus annuus HOM05D005068 ORTHO05D007561 6.0e-272 941.4 1034 54.3
FAN09G4827 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.9e-270 936.4 1074 54.6
Nitab4.5_0009947g0020 Nicotiana tabacum HOM05D005068 ORTHO05D007561 1.6e-269 933.3 1002 56.1
BraA07t31420Z Brassica rapa HOM05D005068 ORTHO05D007561 2.1e-269 932.9 1053 55.7
Glyma.16G012100 Glycine max HOM05D005068 ORTHO05D007561 2.8e-269 932.6 1067 54.7
arahy.Tifrunner.gnm1.ann1.X03KN2 Arachis hypogaea HOM05D005068 ORTHO05D007561 1.9e-265 919.8 1090 51.9
Rhsim08G0242500 Rhododendron simsii HOM05D005068 ORTHO05D007561 4.6e-264 915.2 1092 53.7
Peaxi162Scf00535g00325 Petunia axillaris HOM05D005068 ORTHO05D007561 7.8e-264 914.4 1065 53.7
AUR62009935 Chenopodium quinoa HOM05D005068 ORTHO05D007561 1.7e-263 913.3 1099 50.4
Lj5A31T61 Lonicera japonica HOM05D005068 ORTHO05D007561 2.1e-261 906.4 891 57.7
Ca_30848_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 8.1e-261 904.4 895 58.2
AUR62001432 Chenopodium quinoa HOM05D005068 ORTHO05D007561 7.6e-259 897.9 1108 49.1
DCAR_026429 Daucus carota HOM05D005068 ORTHO05D007561 7.6e-259 897.9 1095 52.1
Nn8g38536 Nelumbo nucifera HOM05D005068 ORTHO05D007561 1.6e-253 880.2 1066 51.1
CDE05G0629 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 1.4e-252 877.1 1059 51.2
vmacro15071 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 9.0e-252 874.4 897 56.6
unitig_26.g8921 Utricularia gibba HOM05D005068 ORTHO05D007561 4.6e-248 862.1 1070 51.6
HPP92_014041 Vanilla planifolia HOM05D005068 ORTHO05D007561 1.7e-242 843.6 1113 49.0
Actinidia21819 Actinidia chinensis HOM05D005068 ORTHO05D007561 2.1e-240 836.6 900 55.8
MBI13_g01677_MAGBIO Magnolia biondii HOM05D005068 ORTHO05D007561 1.4e-236 823.9 950 52.8
Os09g0116400 Oryza sativa ssp. japonica HOM05D005068 ORTHO05D007561 5.3e-236 822.0 1077 48.1
ATR0317G028 Amborella trichopoda HOM05D005068 ORTHO05D007561 2.5e-230 803.1 1125 46.8
SEGI_35987 Sequoiadendron giganteum HOM05D005068 ORTHO05D007561 4.2e-225 785.8 1097 47.2
SGA_v2.0_scaffold71G23904 Striga asiatica HOM05D005068 ORTHO05D007561 7.9e-224 781.6 1057 49.0
Zm00001eb008900 Zea mays HOM05D005068 ORTHO05D007561 1.8e-223 780.4 1085 47.0
Nitab4.5_0007072g0030 Nicotiana tabacum HOM05D005068 ORTHO05D007561 1.4e-217 760.8 834 55.6
TAR383G0209 Trochodendron aralioides HOM05D005068 ORTHO05D007561 8.5e-210 734.9 725 60.7
COL.COLO4_30833 Corchorus olitorius HOM05D005068 ORTHO05D007561 1.5e-206 724.2 595 68.2
vmacro14086 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 3.1e-204 716.5 619 63.7
A07p38620 Brassica napus HOM05D005068 ORTHO05D007561 2.5e-193 680.2 586 65.5
SHI38508 Sapria himalayana HOM05D005068 ORTHO05D007561 7.2e-193 678.7 1049 44.2
Migut.I01119 Erythranthe guttata HOM05D005068 ORTHO05D007561 6.1e-192 675.6 1072 43.8
FAN02G4153 Fragaria x ananassa HOM05D005068 ORTHO05D007561 3.6e-184 649.8 654 57.3
AagrBONN_evm.TU.Sc2ySwM_228.3616 Anthoceros agrestis HOM05D005068 ORTHO05D007561 2.5e-177 627.1 962 41.3
Pp3c8_7540 Physcomitrium patens HOM05D005068 ORTHO05D007561 4.6e-171 606.3 1175 37.9
Mapoly0001s0039 Marchantia polymorpha HOM05D005068 ORTHO05D007561 3.4e-166 590.1 1059 40.6
Dinv37834 Davidia involucrata HOM05D005068 ORTHO05D007561 8.3e-165 585.5 517 64.0
ECA234G3781 Erigeron canadensis HOM05D005068 ORTHO05D007561 7.6e-150 535.8 915 41.7
Sc12g0010810 Simmondsia chinensis HOM05D005068 ORTHO05D007561 1.7e-141 508.1 772 45.1
PGSC0003DMG400009145 Solanum tuberosum HOM05D005068 ORTHO05D007561 2.2e-141 507.7 584 54.1
CDE11G1047 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 6.4e-141 506.1 654 47.7
CBR_g4353 Chara braunii HOM05D005068 ORTHO05D007561 1.4e-135 488.4 1294 31.7
SMO356G0436 Selaginella moellendorffii HOM05D005068 ORTHO05D007561 2.2e-125 454.5 882 36.4
Dinv37835 Davidia involucrata HOM05D005068 ORTHO05D007561 1.5e-110 405.2 360 61.9
CDE11G0362 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 1.2e-91 342.4 386 52.6
Cre10.g459600 Chlamydomonas reinhardtii HOM05D005068 ORTHO05D007561 4.0e-90 337.4 1088 31.8
Haze_25369 Corylus avellana HOM05D005068 ORTHO05D007561 5.7e-81 307.0 646 36.8
TAR383G0400 Trochodendron aralioides HOM05D005068 ORTHO05D007561 1.5e-76 292.4 415 44.3
SHI25215 Sapria himalayana HOM05D005068 ORTHO05D007561 1.8e-74 285.4 553 43.4
PRCOL_00007240 Prasinoderma coloniale HOM05D005068 ORTHO05D007561 1.6e-67 262.3 878 31.8
FAN23G2170 Fragaria x ananassa HOM05D005068 ORTHO05D007561 4.9e-56 224.2 185 63.8
Cc00_g06320 Coffea canephora HOM05D005068 ORTHO05D007561 6.6e-53 213.8 165 67.9
Cfa026526 Carpinus fangiana HOM05D005068 ORTHO05D007561 1.2e-51 209.5 978 28.0
MSTRG.13912 Avicennia marina HOM05D005068 ORTHO05D019833 8.3e-48 196.8 255 52.9
vmacro14085 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 1.2e-46 193.0 260 46.9
Psat7g194920 Pisum sativum HOM05D005068 ORTHO05D030493 6.6e-37 160.6 217 49.3
Lj5C31T11 Lonicera japonica HOM05D005068 ORTHO05D019833 4.2e-31 141.4 240 47.5
HanXRQChr04g0122031 Helianthus annuus HOM05D005068 ORTHO05D007561 3.0e-29 135.2 131 58.0
vmacro15070 Vaccinium macrocarpon HOM05D005068 ORTHO05D019833 2.1e-22 112.5 214 44.9
Sc16g0005210 Simmondsia chinensis HOM05D005068 ORTHO05D019833 1.0e-21 110.2 227 42.7
Zm00001eb239840 Zea mays HOM05D001561 ORTHO05D001715 2.3e-21 109.0 148 44.6
Hund18058 Selenicereus undatus HOM05D005068 ORTHO05D030493 9.6e-20 103.6 176 42.0
COL.COLO4_30832 Corchorus olitorius HOM05D005068 ORTHO05D014954 2.4e-18 99.0 51 90.2
Psat7g194960 Pisum sativum HOM05D005068 ORTHO05D030493 5.3e-18 97.8 119 49.6
Sc16g0005100 Simmondsia chinensis HOM05D005068 ORTHO05D014954 2.0e-17 95.9 57 77.2
Psat4g066440 Pisum sativum HOM05D005068 ORTHO05D030493 6.0e-14 84.3 72 61.1
ECA233G2064 Erigeron canadensis HOM05D005068 ORTHO05D007561 2.3e-13 82.4 81 51.9
Sc16g0005200 Simmondsia chinensis HOM05D005068 ORTHO05D019833 6.2e-11 74.3 138 40.6
vmacro14087 Vaccinium macrocarpon HOM05D005068 ORTHO05D019833 2.2e-08 65.9 37 81.1
C04p42190 Brassica napus HOM05D014151 ORTHO05D014954 5.5e-07 61.2 45 60.0
C09p50490 Brassica napus HOM05D014151 ORTHO05D014954 5.5e-07 61.2 45 60.0
C03p21460 Brassica napus HOM05D014151 ORTHO05D014954 9.3e-07 60.5 45 60.0
BolC3t14532H Brassica oleracea HOM05D014151 ORTHO05D014954 9.3e-07 60.5 45 60.0
BcaC09g47952 Brassica carinata HOM05D014151 ORTHO05D014954 2.1e-06 59.3 45 57.8
Psat7g258920 Pisum sativum HOM05D002153 ORTHO05D002137 7.9e-06 57.4 50 60.0


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