Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc25.148 Carica papaya HOM05D004368 ORTHO05D004990 4.0e-111 404.8 211 100.0
Manes.11G016500 Manihot esculenta HOM05D004368 ORTHO05D004990 2.9e-101 372.1 211 91.5
Ciclev10026090m.g Citrus clementina HOM05D004368 ORTHO05D004990 6.0e-99 364.4 211 88.6
Thecc.06G124200 Theobroma cacao HOM05D004368 ORTHO05D004990 2.3e-98 362.5 211 90.0
Duzib235G0527 Durio zibethinus HOM05D004368 ORTHO05D004990 8.6e-98 360.5 211 87.7
CSS0030612 Camellia sinensis var. sinensis HOM05D004368 ORTHO05D004990 5.6e-97 357.8 211 87.7
Actinidia21803 Actinidia chinensis HOM05D004368 ORTHO05D004990 1.6e-96 356.3 211 88.2
Duzib160G0466 Durio zibethinus HOM05D004368 ORTHO05D004990 3.6e-96 355.1 211 86.7
Eucgr.F02457 Eucalyptus grandis HOM05D004368 ORTHO05D004990 3.6e-96 355.1 211 86.3
Gohir.A05G138800 Gossypium hirsutum HOM05D004368 ORTHO05D004990 3.6e-96 355.1 211 86.3
GSVIVG01016719001 Vitis vinifera HOM05D004368 ORTHO05D004990 3.6e-96 355.1 211 85.8
TAR626G1097 Trochodendron aralioides HOM05D004368 ORTHO05D004990 4.7e-96 354.8 211 87.2
Actinidia32205 Actinidia chinensis HOM05D004368 ORTHO05D004990 6.2e-96 354.4 211 86.3
Gohir.D05G141000 Gossypium hirsutum HOM05D004368 ORTHO05D004990 6.2e-96 354.4 211 85.8
Gorai.009G145200 Gossypium raimondii HOM05D004368 ORTHO05D004990 6.2e-96 354.4 211 85.8
QL05p003761 Quercus lobata HOM05D004368 ORTHO05D004990 6.2e-96 354.4 212 86.8
PGR119G1615 Punica granatum HOM05D004368 ORTHO05D004990 1.1e-95 353.6 211 85.3
CiPaw.01G216100 Carya illinoinensis HOM05D004368 ORTHO05D004990 1.4e-95 353.2 213 87.3
Nn8g38578 Nelumbo nucifera HOM05D004368 ORTHO05D004990 3.1e-95 352.1 211 83.9
Potri.001G166000 Populus trichocarpa HOM05D004368 ORTHO05D004990 5.2e-95 351.3 211 85.3
Sc15g0000580 Simmondsia chinensis HOM05D004368 ORTHO05D004990 5.2e-95 351.3 210 85.2
TWI23G0003 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 1.2e-94 350.1 210 84.8
Cc06_g01580 Coffea canephora HOM05D004368 ORTHO05D004990 2.0e-94 349.4 213 85.0
FAN09G0342 Fragaria x ananassa HOM05D004368 ORTHO05D004990 2.0e-94 349.4 211 85.3
VMungo0540G1553 Vigna mungo HOM05D004368 ORTHO05D004990 2.6e-94 349.0 212 84.9
CsaV3_3G030850 Cucumis sativus L. HOM05D000945 ORTHO05D000919 3.4e-94 348.6 209 85.6
COL.COLO4_30792 Corchorus olitorius HOM05D004368 ORTHO05D004990 5.8e-94 347.8 211 84.8
FvH4_6g35160 Fragaria vesca HOM05D004368 ORTHO05D004990 5.8e-94 347.8 211 84.8
Lj9C535T4 Lonicera japonica HOM05D004368 ORTHO05D004990 9.8e-94 347.1 211 83.4
TPR.G29997 Trifolium pratense HOM05D004368 ORTHO05D004990 1.3e-93 346.7 211 82.0
Rhsim08G0241200 Rhododendron simsii HOM05D004368 ORTHO05D004990 1.7e-93 346.3 211 83.9
TAR468G0014 Trochodendron aralioides HOM05D004368 ORTHO05D004990 1.7e-93 346.3 211 85.3
ClCG07G014470 Citrullus lanatus HOM05D004368 ORTHO05D004990 2.2e-93 345.9 209 85.6
MELO3C022680.2 Cucumis melo HOM05D004368 ORTHO05D004990 2.2e-93 345.9 209 85.2
Psat4g167320 Pisum sativum HOM05D004368 ORTHO05D004990 2.2e-93 345.9 212 82.1
Ah.15g095150 Amaranthus hybridus HOM05D004368 ORTHO05D004990 2.9e-93 345.5 207 85.0
FAN02G3674 Fragaria x ananassa HOM05D004368 ORTHO05D004990 3.7e-93 345.1 211 83.9
FAN05G4100 Fragaria x ananassa HOM05D004368 ORTHO05D004990 3.7e-93 345.1 211 83.9
DCAR_016106 Daucus carota HOM05D004368 ORTHO05D004990 4.9e-93 344.7 211 82.9
Sed0018133 Sechium edule HOM05D004368 ORTHO05D004990 4.9e-93 344.7 209 84.7
vmacro06407 Vaccinium macrocarpon HOM05D004368 ORTHO05D004990 6.4e-93 344.4 211 83.9
Hma1.2p1_0311F.1_g121230 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 1.1e-92 343.6 211 83.9
Hund18675 Selenicereus undatus HOM05D004368 ORTHO05D004990 1.1e-92 343.6 213 84.0
THA.LOC104822665 Tarenaya hassleriana HOM05D004368 ORTHO05D004990 1.4e-92 343.2 213 84.0
Glyma.16G010200 Glycine max HOM05D004368 ORTHO05D004990 1.9e-92 342.8 212 84.0
MBI02_g13231_MAGBIO Magnolia biondii HOM05D004368 ORTHO05D004990 1.9e-92 342.8 212 84.9
RcHm_v2.0_Chr2g0146421 Rosa chinensis HOM05D004368 ORTHO05D004990 1.9e-92 342.8 211 83.9
Haze_16075 Corylus avellana HOM05D004368 ORTHO05D004990 3.2e-92 342.0 213 85.4
HanXRQChr15g0497161 Helianthus annuus HOM05D004368 ORTHO05D004990 3.2e-92 342.0 213 82.6
AT3G14110 Arabidopsis thaliana HOM05D004368 ORTHO05D004990 4.1e-92 341.7 211 83.9
Hma1.2p1_0414F.1_g147650 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 4.1e-92 341.7 211 83.9
Carub.0003s1372 Capsella rubella HOM05D004368 ORTHO05D004990 7.1e-92 340.9 211 83.4
AUR62009921 Chenopodium quinoa HOM05D004368 ORTHO05D004990 7.1e-92 340.9 207 83.6
CARHR088970 Cardamine hirsuta HOM05D004368 ORTHO05D004990 9.2e-92 340.5 212 81.1
Peaxi162Scf00043g02929 Petunia axillaris HOM05D004368 ORTHO05D004990 9.2e-92 340.5 211 82.5
Lalb_Chr17g0343461 Lupinus albus HOM05D004368 ORTHO05D004990 1.2e-91 340.1 212 82.5
Medtr8g022040 Medicago truncatula HOM05D004368 ORTHO05D004990 1.2e-91 340.1 212 80.7
DCAR_022662 Daucus carota HOM05D004368 ORTHO05D004990 1.6e-91 339.7 211 82.0
Phvul.006G206500 Phaseolus vulgaris HOM05D004368 ORTHO05D004990 1.6e-91 339.7 212 83.5
Thhalv10021156m.g Eutrema salsugineum HOM05D004368 ORTHO05D004990 2.1e-91 339.3 212 82.5
AUR62001444 Chenopodium quinoa HOM05D004368 ORTHO05D004990 2.7e-91 339.0 207 83.1
Lj3g0026199 Lotus japonicus HOM05D004368 ORTHO05D004990 2.7e-91 339.0 212 81.1
Sp3g12370 Schrenkiella parvula HOM05D004368 ORTHO05D004990 2.7e-91 339.0 212 82.1
AL3G26340 Arabidopsis lyrata HOM05D004368 ORTHO05D004990 3.5e-91 338.6 211 82.5
MD17G1148400 Malus domestica HOM05D004368 ORTHO05D004990 3.5e-91 338.6 212 82.5
Oeu064511.1 Olea europaea HOM05D004368 ORTHO05D004990 3.5e-91 338.6 206 84.0
MD09G1178400 Malus domestica HOM05D004368 ORTHO05D004990 7.8e-91 337.4 212 82.5
Glyma.07G041700 Glycine max HOM05D004368 ORTHO05D004990 1.0e-90 337.0 212 82.5
Aa31LG8G1340 Aethionema arabicum HOM05D004368 ORTHO05D004990 1.7e-90 336.3 211 81.0
Lj5A32G57 Lonicera japonica HOM05D004368 ORTHO05D004990 1.7e-90 336.3 212 81.1
Ca_23409_v3 Cicer arietinum L. HOM05D004368 ORTHO05D004990 2.3e-90 335.9 212 82.1
Gorai.010G235500 Gossypium raimondii HOM05D004368 ORTHO05D004990 3.0e-90 335.5 209 82.3
EL10Ac7g16443 Beta vulgaris HOM05D004368 ORTHO05D004990 3.9e-90 335.1 207 83.6
ECA247G3177 Erigeron canadensis HOM05D004368 ORTHO05D004990 3.9e-90 335.1 214 80.4
Nitab4.5_0003342g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 5.1e-90 334.7 212 81.1
BcaB04g18818 Brassica carinata HOM05D004368 ORTHO05D004990 6.6e-90 334.3 213 81.2
Gohir.D06G201700 Gossypium hirsutum HOM05D004368 ORTHO05D004990 8.6e-90 334.0 209 81.8
FAN14G3095 Fragaria x ananassa HOM05D004368 ORTHO05D004990 1.1e-89 333.6 234 76.1
Gohir.A06G193900 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.5e-89 333.2 209 81.3
Nitab4.5_0000845g0110 Nicotiana tabacum HOM05D004368 ORTHO05D004990 1.5e-89 333.2 212 80.7
C05p53530 Brassica napus HOM05D004368 ORTHO05D004990 1.9e-89 332.8 212 79.2
BolC5t34030H Brassica oleracea HOM05D004368 ORTHO05D004990 1.9e-89 332.8 212 79.2
Aqoxy7G01007 Aquilegia oxysepala HOM05D004368 ORTHO05D004990 2.5e-89 332.4 211 82.5
A05p35340 Brassica napus HOM05D004368 ORTHO05D004990 2.5e-89 332.4 214 79.4
BraA05t22344Z Brassica rapa HOM05D004368 ORTHO05D004990 2.5e-89 332.4 214 79.4
A03p38620 Brassica napus HOM05D004368 ORTHO05D004990 3.3e-89 332.0 213 81.2
BcaC01g03958 Brassica carinata HOM05D004368 ORTHO05D004990 4.3e-89 331.6 213 81.2
BolC3t16938H Brassica oleracea HOM05D004368 ORTHO05D004990 4.3e-89 331.6 213 81.2
BraA03t13009Z Brassica rapa HOM05D004368 ORTHO05D004990 1.2e-88 330.1 213 80.8
C03p46730 Brassica napus HOM05D004368 ORTHO05D004990 2.1e-88 329.3 213 80.8
ATR0568G120 Amborella trichopoda HOM05D004368 ORTHO05D004990 3.6e-88 328.6 210 83.8
Peaxi162Scf01157g00111 Petunia axillaris HOM05D004368 ORTHO05D004990 3.6e-88 328.6 205 81.5
unitig_27.g24839 Utricularia gibba HOM05D004368 ORTHO05D004990 6.2e-88 327.8 212 79.2
ECA248G3608 Erigeron canadensis HOM05D004368 ORTHO05D004990 1.4e-87 326.6 213 79.3
Lsat_1_v5_gn_4_91400 Lactuca sativa HOM05D004368 ORTHO05D004990 1.4e-87 326.6 213 80.3
unitig_27.g24862 Utricularia gibba HOM05D004368 ORTHO05D004990 1.4e-87 326.6 212 78.8
CAN.G1487.1 Capsicum annuum HOM05D004368 ORTHO05D004990 1.8e-87 326.2 211 78.7
Os01g0510600 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 3.1e-87 325.5 211 80.1
PGSC0003DMG400003792 Solanum tuberosum HOM05D004368 ORTHO05D004990 3.1e-87 325.5 211 78.7
SalBow5G3644 Salvia bowleyana HOM05D004368 ORTHO05D004990 4.0e-87 325.1 213 80.3
Sopen09g028680 Solanum pennellii HOM05D004368 ORTHO05D004990 4.0e-87 325.1 211 78.7
Sopen09g028700 Solanum pennellii HOM05D004368 ORTHO05D004990 4.0e-87 325.1 211 78.7
Solyc09g072880.3 Solanum lycopersicum HOM05D004368 ORTHO05D004990 5.2e-87 324.7 211 78.2
CAN.G941.28 Capsicum annuum HOM05D004368 ORTHO05D004990 2.0e-86 322.8 215 76.3
SalBow5G0362 Salvia bowleyana HOM05D004368 ORTHO05D004990 2.0e-86 322.8 213 79.8
CANSAT56G3889 Cannabis sativa HOM05D004368 ORTHO05D004990 3.4e-86 322.0 211 78.7
Lalb_Chr04g0253731 Lupinus albus HOM05D004368 ORTHO05D004990 3.4e-86 322.0 212 78.8
Sopen06g002970 Solanum pennellii HOM05D004368 ORTHO05D004990 4.4e-86 321.6 215 75.8
Solyc06g008160.4 Solanum lycopersicum HOM05D004368 ORTHO05D004990 7.6e-86 320.9 215 75.8
Zm00001eb308830 Zea mays HOM05D004368 ORTHO05D004990 7.6e-86 320.9 207 79.2
PSO724G0024 Papaver somniferum HOM05D004368 ORTHO05D004990 8.3e-85 317.4 209 79.4
Sabra01G0127300 Salix brachista HOM05D004368 ORTHO05D004990 1.4e-84 316.6 276 64.5
PSO386G0078 Papaver somniferum HOM05D004368 ORTHO05D004990 4.1e-84 315.1 209 78.5
unitig_699.g19383 Utricularia gibba HOM05D004368 ORTHO05D004990 1.2e-83 313.5 212 75.9
HanXRQChr09g0277121 Helianthus annuus HOM05D004368 ORTHO05D004990 2.1e-83 312.8 216 76.4
HPP92_003012 Vanilla planifolia HOM05D004368 ORTHO05D004990 2.1e-83 312.8 211 76.3
CDE05G2024 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 3.5e-83 312.0 207 76.3
Migut.L01998 Erythranthe guttata HOM05D004368 ORTHO05D004990 1.7e-82 309.7 214 73.8
CDE04G0878 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 3.9e-82 308.5 208 76.4
BcaC05g29122 Brassica carinata HOM05D004368 ORTHO05D004990 4.0e-79 298.5 212 72.2
Nn6g35672 Nelumbo nucifera HOM05D004368 ORTHO05D004990 8.9e-79 297.4 211 74.9
arahy.Tifrunner.gnm1.ann1.26KYL2 Arachis hypogaea HOM05D004368 ORTHO05D004990 2.6e-78 295.8 218 71.6
arahy.Tifrunner.gnm1.ann1.AFL61P Arachis hypogaea HOM05D004368 ORTHO05D004990 1.7e-77 293.1 177 82.5
Atru.chr1.4073 Acer truncatum HOM05D004368 ORTHO05D004990 1.9e-76 289.7 177 85.3
Nitab4.5_0006980g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 2.4e-71 272.7 169 81.7
Gorai.004G102400 Gossypium raimondii HOM05D004368 ORTHO05D004990 1.5e-70 270.0 190 75.8
Os02g0586800 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 2.7e-67 259.2 210 66.7
Gorai.001G096600 Gossypium raimondii HOM05D004368 ORTHO05D004990 6.0e-67 258.1 204 70.6
Nitab4.5_0000326g0270 Nicotiana tabacum HOM05D004368 ORTHO05D004990 7.9e-67 257.7 166 78.9
Atru.chr1.4083 Acer truncatum HOM05D004368 ORTHO05D004990 6.2e-64 248.1 166 79.5
Gohir.D08G096333 Gossypium hirsutum HOM05D004368 ORTHO05D004990 5.3e-63 245.0 190 71.6
SGA_v2.0_scaffold110G31269 Striga asiatica HOM05D004368 ORTHO05D004990 4.5e-62 241.9 302 49.3
Gohir.D07G090325 Gossypium hirsutum HOM05D004368 ORTHO05D004990 2.9e-61 239.2 173 74.0
Dinv20409 Davidia involucrata HOM05D004368 ORTHO05D004990 1.1e-60 237.3 144 85.4
Mapoly0108s0002 Marchantia polymorpha HOM05D004368 ORTHO05D004990 1.1e-60 237.3 209 61.2
Mapoly0110s0050 Marchantia polymorpha HOM05D004368 ORTHO05D004990 1.1e-60 237.3 209 61.2
Dinv37846 Davidia involucrata HOM05D004368 ORTHO05D004990 1.9e-60 236.5 144 84.7
CDE05G2107 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 2.1e-59 233.0 211 60.7
FAN05G2230 Fragaria x ananassa HOM05D004368 ORTHO05D004990 7.9e-59 231.1 144 84.0
AagrBONN_evm.TU.Sc2ySwM_228.3011 Anthoceros agrestis HOM05D004368 ORTHO05D004990 3.0e-58 229.2 185 65.4
Prupe.3G037600 Prunus persica HOM05D004368 ORTHO05D004990 4.3e-57 225.3 148 81.1
HPP92_027544 Vanilla planifolia HOM05D004368 ORTHO05D004990 1.0e-53 214.2 150 75.3
CBR_g39266 Chara braunii HOM05D004368 ORTHO05D004990 1.4e-52 210.3 204 56.9
Pp3c11_3130 Physcomitrium patens HOM05D004368 ORTHO05D004990 1.4e-52 210.3 184 59.8
SMO141G0180 Selaginella moellendorffii HOM05D004368 ORTHO05D004990 1.5e-49 200.3 185 57.8
Rhsim03G0211800 Rhododendron simsii HOM05D004368 ORTHO05D004990 7.4e-49 198.0 221 52.5
Zm00001eb245590 Zea mays HOM05D004368 ORTHO05D004990 7.1e-44 181.4 145 65.5
TWI14G0995 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 6.3e-32 141.7 210 44.3
Cre10.g460050 Chlamydomonas reinhardtii HOM05D004368 ORTHO05D004990 2.9e-29 132.9 241 36.1
PGSC0003DMG400014712 Solanum tuberosum HOM05D004368 ORTHO05D004990 3.3e-25 119.4 68 82.4
PRCOL_00003238 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 1.5e-20 104.0 209 35.4
MCO11G340 Micromonas commoda HOM05D004368 ORTHO05D004990 1.2e-19 100.9 214 32.2
MCO14G328 Micromonas commoda HOM05D004368 ORTHO05D004990 2.2e-16 90.1 235 32.3
PRCOL_00003077 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 5.9e-14 82.0 246 28.9
MCO15G457 Micromonas commoda HOM05D004368 ORTHO05D268172 1.6e-11 73.9 202 32.2
TAR624G0904 Trochodendron aralioides HOM05D004368 ORTHO05D004990 2.1e-11 73.6 46 80.4
SGA_v2.0_scaffold382G50397 Striga asiatica HOM05D004368 ORTHO05D004990 8.0e-11 71.6 42 73.8
TAR624G0589 Trochodendron aralioides HOM05D004368 ORTHO05D004990 8.0e-11 71.6 41 80.5
CBR_g29854 Chara braunii HOM05D004368 ORTHO05D004990 4.4e-09 65.9 75 52.0
RcHm_v2.0_Chr5g0074611 Rosa chinensis HOM05D004368 ORTHO05D004990 2.4e-07 60.1 37 75.7


User provided reference genes

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