Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc25.10 Carica papaya HOM05D006741 ORTHO05D008434 1.8e-279 965.3 499 100.0
QL05p019947 Quercus lobata HOM05D006741 ORTHO05D008434 5.0e-136 488.8 503 56.3
Cfa003646 Carpinus fangiana HOM05D006741 ORTHO05D008434 6.7e-133 478.4 501 55.5
Thecc.06G100200 Theobroma cacao HOM05D006741 ORTHO05D008434 8.7e-133 478.0 513 54.6
CiPaw.01G231300 Carya illinoinensis HOM05D006741 ORTHO05D008434 9.7e-132 474.6 501 54.9
Duzib235G1269 Durio zibethinus HOM05D006741 ORTHO05D008434 3.7e-131 472.6 513 55.4
COL.COLO4_30514 Corchorus olitorius HOM05D006741 ORTHO05D008434 8.2e-131 471.5 510 54.1
Manes.11G033400 Manihot esculenta HOM05D006741 ORTHO05D008434 1.1e-124 451.1 513 51.1
Atru.chr1.3525 Acer truncatum HOM05D006741 ORTHO05D008434 1.5e-124 450.7 505 54.1
Duzib192G0766 Durio zibethinus HOM05D006741 ORTHO05D008434 8.2e-123 444.9 511 52.8
Haze_15849 Corylus avellana HOM05D006741 ORTHO05D008434 2.6e-121 439.9 429 56.6
TWI75G1374 Tripterygium wilfordii HOM05D006741 ORTHO05D008434 3.6e-118 429.5 511 49.5
Sabra05G0046800 Salix brachista HOM05D006741 ORTHO05D008434 4.7e-118 429.1 496 52.0
TAR636G1866 Trochodendron aralioides HOM05D006741 ORTHO05D008434 1.8e-117 427.2 510 49.2
Potri.013G040800 Populus trichocarpa HOM05D006741 ORTHO05D008434 3.9e-117 426.0 500 51.6
Potri.005G053300 Populus trichocarpa HOM05D006741 ORTHO05D008434 1.1e-116 424.5 496 52.2
Actinidia09006 Actinidia chinensis HOM05D006741 ORTHO05D008434 5.7e-116 422.2 498 49.6
CSS0034583 Camellia sinensis var. sinensis HOM05D006741 ORTHO05D008434 7.4e-116 421.8 491 51.3
CSS0005978 Camellia sinensis var. sinensis HOM05D006741 ORTHO05D008434 2.2e-115 420.2 491 51.1
Actinidia39136 Actinidia chinensis HOM05D006741 ORTHO05D008434 2.6e-113 413.3 498 49.2
Cpa.g.sc25.28 Carica papaya HOM05D006741 ORTHO05D008434 7.2e-111 405.2 289 74.4
Dinv30435 Davidia involucrata HOM05D006741 ORTHO05D008434 2.3e-109 400.2 477 50.3
Gohir.A06G189500 Gossypium hirsutum HOM05D006741 ORTHO05D008434 6.7e-109 398.7 498 49.6
Rhsim08G0227700 Rhododendron simsii HOM05D006741 ORTHO05D008434 3.1e-106 389.8 506 49.4
Sabra13G0037700 Salix brachista HOM05D006741 ORTHO05D008434 5.9e-105 385.6 479 49.3
Gohir.D06G197900 Gossypium hirsutum HOM05D006741 ORTHO05D008434 1.0e-104 384.8 498 48.8
PGR102G3207 Punica granatum HOM05D006741 ORTHO05D008434 1.0e-104 384.8 509 47.9
Gorai.010G230700 Gossypium raimondii HOM05D006741 ORTHO05D008434 1.3e-104 384.4 498 48.6
Ciclev10027417m.g Citrus clementina HOM05D006741 ORTHO05D008434 1.1e-103 381.3 500 49.0
Lalb_Chr01g0013161 Lupinus albus HOM05D006741 ORTHO05D008434 9.4e-103 378.3 456 50.0
Nn6g35322 Nelumbo nucifera HOM05D006741 ORTHO05D008434 2.3e-101 373.6 495 47.1
vmacro17014 Vaccinium macrocarpon HOM05D006741 ORTHO05D008434 7.5e-100 368.6 448 48.7
MD17G1183900 Malus domestica HOM05D006741 ORTHO05D008434 9.8e-100 368.2 512 47.5
CANSAT56G2677 Cannabis sativa HOM05D006741 ORTHO05D008434 4.8e-99 365.9 530 45.1
Prupe.3G058900 Prunus persica HOM05D006741 ORTHO05D008434 9.1e-98 361.7 511 46.2
arahy.Tifrunner.gnm1.ann1.X4D5DL Arachis hypogaea HOM05D006741 ORTHO05D008434 1.6e-97 360.9 456 48.5
Lj3g0008384 Lotus japonicus HOM05D006741 ORTHO05D008434 2.7e-97 360.1 462 46.8
arahy.Tifrunner.gnm1.ann1.CS2PXA Arachis hypogaea HOM05D006741 ORTHO05D008434 3.5e-97 359.8 444 49.3
Oeu017120.1 Olea europaea HOM05D006741 ORTHO05D008434 2.9e-96 356.7 505 45.9
Sed0020930 Sechium edule HOM05D006741 ORTHO05D008434 7.2e-95 352.1 510 44.3
MD09G1202700 Malus domestica HOM05D006741 ORTHO05D008434 1.6e-94 350.9 514 45.5
Eucgr.J02937 Eucalyptus grandis HOM05D006741 ORTHO05D008434 3.0e-93 346.7 417 47.2
MELO3C013001.2 Cucumis melo HOM05D006741 ORTHO05D008434 4.0e-93 346.3 551 43.4
Medtr8g014490 Medicago truncatula HOM05D006741 ORTHO05D008434 3.1e-90 336.7 459 45.5
TPR.G26946 Trifolium pratense HOM05D006741 ORTHO05D008434 2.7e-89 333.6 511 42.5
ClCG07G013320 Citrullus lanatus HOM05D006741 ORTHO05D008434 3.5e-89 333.2 553 41.8
CsaV3_3G023590 Cucumis sativus L. HOM05D006741 ORTHO05D008434 3.5e-89 333.2 481 44.3
PSO210G6928 Papaver somniferum HOM05D006741 ORTHO05D008434 4.3e-87 326.2 494 44.7
THA.LOC104806335 Tarenaya hassleriana HOM05D006741 ORTHO05D008434 5.6e-87 325.9 495 43.4
Ca_23263_v3 Cicer arietinum L. HOM05D006741 ORTHO05D008434 1.2e-86 324.7 459 45.8
Ca_23272_v3 Cicer arietinum L. HOM05D006741 ORTHO05D008434 1.2e-86 324.7 459 45.8
PSO210G4778 Papaver somniferum HOM05D006741 ORTHO05D008434 1.6e-86 324.3 502 45.0
DCAR_023081 Daucus carota HOM05D006741 ORTHO05D008434 2.3e-85 320.5 492 42.1
Sc12g0010170 Simmondsia chinensis HOM05D006741 ORTHO05D008434 3.0e-85 320.1 503 41.4
Cc04_g02540 Coffea canephora HOM05D006741 ORTHO05D008434 4.4e-84 316.2 491 43.0
RcHm_v2.0_Chr2g0140551 Rosa chinensis HOM05D006741 ORTHO05D008434 7.5e-84 315.5 489 43.6
Psat4g197400 Pisum sativum HOM05D006741 ORTHO05D008434 2.9e-83 313.5 450 42.9
GSVIVG01016979001 Vitis vinifera HOM05D006741 ORTHO05D008434 2.4e-82 310.5 490 41.0
MBI01_g10133_MAGBIO Magnolia biondii HOM05D006741 ORTHO05D008434 7.0e-82 308.9 503 41.6
MSTRG.11026 Avicennia marina HOM05D006741 ORTHO05D008434 5.9e-81 305.8 491 40.9
Aqoxy7G03978 Aquilegia oxysepala HOM05D006741 ORTHO05D008434 6.6e-80 302.4 515 40.0
Hund28870 Selenicereus undatus HOM05D006741 ORTHO05D008434 6.6e-80 302.4 502 42.8
Glyma.08G200900 Glycine max HOM05D006741 ORTHO05D008434 3.3e-79 300.1 451 45.0
Hund28829 Selenicereus undatus HOM05D006741 ORTHO05D008434 3.3e-79 300.1 503 42.9
PGSC0003DMG400026441 Solanum tuberosum HOM05D006741 ORTHO05D008434 5.6e-79 299.3 505 42.4
Migut.I00896 Erythranthe guttata HOM05D006741 ORTHO05D008434 2.1e-78 297.4 483 41.6
Aa31LG9G10130 Aethionema arabicum HOM05D006741 ORTHO05D008434 8.0e-78 295.4 444 43.2
SGA_v2.0_scaffold69G23318 Striga asiatica HOM05D006741 ORTHO05D008434 6.8e-77 292.4 500 42.8
Nitab4.5_0001172g0120 Nicotiana tabacum HOM05D006741 ORTHO05D008434 2.0e-76 290.8 535 40.4
VMungo0331G0583 Vigna mungo HOM05D006741 ORTHO05D008434 5.8e-76 289.3 466 42.9
Peaxi162Scf00177g00125 Petunia axillaris HOM05D006741 ORTHO05D008434 9.8e-76 288.5 453 42.8
FAN14G5382 Fragaria x ananassa HOM05D006741 ORTHO05D008434 4.9e-75 286.2 488 42.8
Phvul.010G145200 Phaseolus vulgaris HOM05D006741 ORTHO05D008434 4.9e-75 286.2 452 42.9
Carub.0006s3171 Capsella rubella HOM05D006741 ORTHO05D008434 1.9e-74 284.3 471 40.3
Glyma.07G015400 Glycine max HOM05D006741 ORTHO05D008434 1.2e-73 281.6 431 43.6
FvH4_6g32410 Fragaria vesca HOM05D006741 ORTHO05D008434 1.6e-73 281.2 488 42.0
AT4G12540 Arabidopsis thaliana HOM05D006741 ORTHO05D008434 6.0e-73 279.3 452 41.4
FAN05G1069 Fragaria x ananassa HOM05D006741 ORTHO05D008434 6.0e-73 279.3 489 42.1
Solyc12g044620.2 Solanum lycopersicum HOM05D006741 ORTHO05D008434 3.0e-72 276.9 540 38.7
Lj9A513G60 Lonicera japonica HOM05D006741 ORTHO05D008434 3.9e-72 276.6 440 43.0
AL6G47480 Arabidopsis lyrata HOM05D006741 ORTHO05D008434 2.5e-71 273.9 454 41.4
ECA232G4726 Erigeron canadensis HOM05D006741 ORTHO05D008434 2.8e-70 270.4 497 38.2
Nitab4.5_0004241g0050 Nicotiana tabacum HOM05D006741 ORTHO05D008434 3.6e-70 270.0 515 40.8
FAN02G4526 Fragaria x ananassa HOM05D006741 ORTHO05D008434 1.1e-69 268.5 486 41.4
ClCG00G003340 Citrullus lanatus HOM05D006741 ORTHO05D008434 1.4e-69 268.1 433 40.4
Sp6g04980 Schrenkiella parvula HOM05D006741 ORTHO05D008434 2.3e-69 267.3 469 39.9
Ah.01g005790 Amaranthus hybridus HOM05D006741 ORTHO05D008434 4.0e-69 266.5 506 38.3
Thhalv10028639m.g Eutrema salsugineum HOM05D006741 ORTHO05D008434 5.2e-69 266.2 462 40.5
SpUn0055_0020 Schrenkiella parvula HOM05D006741 ORTHO05D008434 6.8e-69 265.8 465 39.8
AUR62031924 Chenopodium quinoa HOM05D006741 ORTHO05D008434 2.6e-68 263.8 508 40.0
Sopen12g023080 Solanum pennellii HOM05D006741 ORTHO05D008434 2.6e-68 263.8 536 38.4
CARHR253650 Cardamine hirsuta HOM05D006741 ORTHO05D008434 2.9e-67 260.4 450 39.6
Nn8g39070 Nelumbo nucifera HOM05D006741 ORTHO05D008434 8.3e-67 258.8 368 42.9
Hma1.2p1_0430F.1_g151390 Hydrangea macrophylla HOM05D006741 ORTHO05D008434 1.2e-65 255.0 495 40.2
HanXRQChr09g0276261 Helianthus annuus HOM05D006741 ORTHO05D008434 1.0e-64 251.9 502 37.5
EL10Ac3g05317 Beta vulgaris HOM05D006741 ORTHO05D008434 1.7e-64 251.1 508 37.8
Lsat_1_v5_gn_4_97420 Lactuca sativa HOM05D006741 ORTHO05D008434 3.9e-64 250.0 503 38.2
A09p26830 Brassica napus HOM05D006741 ORTHO05D008434 5.1e-64 249.6 449 40.5
BraA09t38254Z Brassica rapa HOM05D006741 ORTHO05D008434 2.1e-62 244.2 461 39.9
FAN09G4229 Fragaria x ananassa HOM05D002451 ORTHO05D005601 6.2e-62 242.7 471 40.8
BcaC04g21238 Brassica carinata HOM05D006741 ORTHO05D008434 4.0e-61 240.0 447 40.7
C09p34000 Brassica napus HOM05D006741 ORTHO05D008434 4.0e-61 240.0 447 40.7
BolC9t56238H Brassica oleracea HOM05D006741 ORTHO05D008434 4.0e-61 240.0 447 40.7
Dinv37976 Davidia involucrata HOM05D006741 ORTHO05D008434 1.5e-47 194.9 235 46.4
TAR624G0518 Trochodendron aralioides HOM05D006741 ORTHO05D008434 2.0e-44 184.5 216 46.3
CDE02G1085 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 6.4e-43 179.5 472 35.4
ATR0705G093 Amborella trichopoda HOM05D006741 ORTHO05D008434 9.0e-37 159.1 407 31.0
Os05g0532500 Oryza sativa ssp. japonica HOM05D006741 ORTHO05D008434 1.8e-32 144.8 537 28.3
Zm00001eb353790 Zea mays HOM05D006741 ORTHO05D008434 2.4e-29 134.4 334 34.1
BcaC01g04588 Brassica carinata HOM05D006741 ORTHO05D008434 4.5e-20 103.6 287 33.1
CDE04G0136 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 2.2e-19 101.3 216 37.0
unitig_748.g7441 Utricularia gibba HOM05D006741 ORTHO05D008434 1.1e-18 99.0 202 39.6
unitig_748.g7440 Utricularia gibba HOM05D006741 ORTHO05D008434 1.8e-16 91.7 151 34.4
Actinidia32099 Actinidia chinensis HOM05D006741 ORTHO05D008434 9.0e-13 79.3 161 38.5
C03p36010 Brassica napus HOM05D006741 ORTHO05D008434 6.1e-09 66.6 68 57.4
BolC3t15911H Brassica oleracea HOM05D006741 ORTHO05D008434 6.1e-09 66.6 68 57.4
Cpa.g.sc25.12 Carica papaya HOM05D000315 ORTHO05D000527 1.8e-08 65.1 70 54.3
CDE04G1568 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 2.3e-08 64.7 100 43.0
ECA234G0697 Erigeron canadensis HOM05D006741 ORTHO05D008434 1.7e-06 58.5 109 33.0


User provided reference genes

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