Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc2485.1 Carica papaya HOM05D000406 ORTHO05D006918 2.1e-55 218.8 108 100.0
CsaV3_3G033570 Cucumis sativus L. HOM05D000406 ORTHO05D006918 7.9e-47 190.3 111 82.9
Nn2g10896 Nelumbo nucifera HOM05D000406 ORTHO05D006918 7.9e-47 190.3 104 87.5
ClCG10G022310 Citrullus lanatus HOM05D000406 ORTHO05D006918 3.9e-46 188.0 111 82.9
MELO3C009147.2 Cucumis melo HOM05D000406 ORTHO05D006918 3.9e-46 188.0 111 83.8
Duzib084G1089 Durio zibethinus HOM05D000406 ORTHO05D006918 1.5e-45 186.0 109 84.4
Thecc.03G046600 Theobroma cacao HOM05D000406 ORTHO05D006918 1.5e-45 186.0 109 84.4
Cfa000488 Carpinus fangiana HOM05D000406 ORTHO05D006918 3.3e-45 184.9 108 82.4
Ciclev10012248m.g Citrus clementina HOM05D000406 ORTHO05D006918 3.3e-45 184.9 108 83.3
TWI74G0181 Tripterygium wilfordii HOM05D000406 ORTHO05D006918 3.3e-45 184.9 108 81.5
TWI77G0395 Tripterygium wilfordii HOM05D000406 ORTHO05D006918 3.3e-45 184.9 108 82.4
Manes.08G094100 Manihot esculenta HOM05D000406 ORTHO05D006918 4.3e-45 184.5 109 86.2
Glyma.14G179300 Glycine max HOM05D000406 ORTHO05D006918 1.3e-44 183.0 95 91.6
Phvul.011G011300 Phaseolus vulgaris HOM05D000406 ORTHO05D006918 1.3e-44 183.0 109 82.6
TAR623G0521 Trochodendron aralioides HOM05D001399 ORTHO05D001670 1.3e-44 183.0 104 82.7
Dinv16899 Davidia involucrata HOM05D000406 ORTHO05D006918 2.1e-44 182.2 95 89.5
Glyma.02G211700 Glycine max HOM05D000406 ORTHO05D006918 2.1e-44 182.2 95 91.6
unitig_699.g19378 Utricularia gibba HOM05D000406 ORTHO05D006918 2.1e-44 182.2 99 84.8
VMungo0647G1306 Vigna mungo HOM05D000406 ORTHO05D006918 2.1e-44 182.2 107 81.3
Sc22g0002550 Simmondsia chinensis HOM05D000406 ORTHO05D006918 2.8e-44 181.8 92 91.3
CiPaw.09G211400 Carya illinoinensis HOM05D000406 ORTHO05D006918 3.7e-44 181.4 94 91.5
FAN09G3983 Fragaria x ananassa HOM05D000406 ORTHO05D006918 3.7e-44 181.4 103 83.5
FAN14G2346 Fragaria x ananassa HOM05D000406 ORTHO05D006918 3.7e-44 181.4 103 83.5
FvH4_6g11130 Fragaria vesca HOM05D000406 ORTHO05D006918 4.8e-44 181.0 103 83.5
Atru.chr1.3799 Acer truncatum HOM05D001027 ORTHO05D006918 6.2e-44 180.6 108 79.6
Aqoxy4G02493 Aquilegia oxysepala HOM05D000406 ORTHO05D006918 6.2e-44 180.6 108 80.6
Phvul.008G178900 Phaseolus vulgaris HOM05D000406 ORTHO05D006918 6.2e-44 180.6 107 81.3
FAN05G0431 Fragaria x ananassa HOM05D000406 ORTHO05D006918 8.2e-44 180.3 103 82.5
Medtr4g057850 Medicago truncatula HOM05D000406 ORTHO05D006918 8.2e-44 180.3 97 87.6
Haze_21027 Corylus avellana HOM05D000406 ORTHO05D006918 1.1e-43 179.9 108 80.6
Gohir.A09G174600 Gossypium hirsutum HOM05D000406 ORTHO05D006918 1.1e-43 179.9 109 80.7
Prupe.6G280400 Prunus persica HOM05D000406 ORTHO05D006918 1.1e-43 179.9 111 80.2
TPR.G11802 Trifolium pratense HOM05D000406 ORTHO05D006918 1.1e-43 179.9 95 89.5
CDE12G0752 Ceratophyllum demersum HOM05D000406 ORTHO05D006918 1.4e-43 179.5 105 81.0
Gohir.A10G196500 Gossypium hirsutum HOM05D000406 ORTHO05D006918 1.4e-43 179.5 106 79.2
Gohir.D10G203600 Gossypium hirsutum HOM05D000406 ORTHO05D006918 1.4e-43 179.5 110 79.1
Gorai.011G228400 Gossypium raimondii HOM05D000406 ORTHO05D006918 1.4e-43 179.5 110 79.1
Lalb_Chr04g0251411 Lupinus albus HOM05D000406 ORTHO05D006918 1.4e-43 179.5 95 88.4
MD12G1172100 Malus domestica HOM05D000406 ORTHO05D006918 1.4e-43 179.5 92 92.4
Migut.J00136 Erythranthe guttata HOM05D000406 ORTHO05D006918 1.8e-43 179.1 99 82.8
FAN14G5957 Fragaria x ananassa HOM05D000406 ORTHO05D006918 2.4e-43 178.7 93 90.3
Psat0s2362g0040 Pisum sativum HOM05D000406 ORTHO05D006918 2.4e-43 178.7 106 80.2
Sabra16G0115400 Salix brachista HOM05D000406 ORTHO05D006918 2.4e-43 178.7 100 85.0
Atru.BG.221.p Acer truncatum HOM05D000406 ORTHO05D006918 3.1e-43 178.3 92 90.2
MSTRG.5564 Avicennia marina HOM05D000406 ORTHO05D006918 3.1e-43 178.3 92 89.1
CANSAT35G1945 Cannabis sativa HOM05D000406 ORTHO05D006918 3.1e-43 178.3 95 88.4
Hund14880 Selenicereus undatus HOM05D000406 ORTHO05D006918 3.1e-43 178.3 92 89.1
Actinidia11571 Actinidia chinensis HOM05D000406 ORTHO05D006918 4.0e-43 177.9 101 83.2
CSS0022761 Camellia sinensis var. sinensis HOM05D000406 ORTHO05D006918 4.0e-43 177.9 95 86.3
AUR62030821 Chenopodium quinoa HOM05D000406 ORTHO05D006918 4.0e-43 177.9 113 75.2
QL07p035036 Quercus lobata HOM05D000406 ORTHO05D006918 4.0e-43 177.9 106 80.2
Sed0017323 Sechium edule HOM05D000406 ORTHO05D006918 4.0e-43 177.9 95 88.4
THA.LOC104827047 Tarenaya hassleriana HOM05D000406 ORTHO05D006918 4.0e-43 177.9 107 81.3
vmacro20297 Vaccinium macrocarpon HOM05D000406 ORTHO05D006918 4.0e-43 177.9 100 83.0
AUR62030475 Chenopodium quinoa HOM05D000406 ORTHO05D006918 5.3e-43 177.6 92 88.0
Lj2A71T59 Lonicera japonica HOM05D000406 ORTHO05D006918 5.3e-43 177.6 94 89.4
PSO339G5837 Papaver somniferum HOM05D000406 ORTHO05D006918 5.3e-43 177.6 108 77.8
Potri.016G119500 Populus trichocarpa HOM05D000406 ORTHO05D006918 5.3e-43 177.6 100 85.0
Sed0006450 Sechium edule HOM05D000406 ORTHO05D006918 5.3e-43 177.6 94 90.4
MSTRG.18994 Avicennia marina HOM05D000406 ORTHO05D006918 6.9e-43 177.2 92 88.0
Lj1g0007203 Lotus japonicus HOM05D000406 ORTHO05D006918 6.9e-43 177.2 95 86.3
Cc11_g00480 Coffea canephora HOM05D000406 ORTHO05D006918 9.0e-43 176.8 103 82.5
Rhsim05G0217500 Rhododendron simsii HOM05D003030 ORTHO05D003610 1.5e-42 176.0 101 83.2
THA.LOC104823292 Tarenaya hassleriana HOM05D000406 ORTHO05D006918 1.5e-42 176.0 108 79.6
CAN.G243.19 Capsicum annuum HOM05D000406 ORTHO05D006918 2.0e-42 175.6 95 86.3
MD00G1062100 Malus domestica HOM05D000406 ORTHO05D006918 2.0e-42 175.6 92 89.1
Nitab4.5_0000770g0070 Nicotiana tabacum HOM05D000954 ORTHO05D006918 2.0e-42 175.6 95 86.3
RcHm_v2.0_Chr3g0462571 Rosa chinensis HOM05D000406 ORTHO05D006918 2.0e-42 175.6 106 79.2
Aa31LG1G23000 Aethionema arabicum HOM05D000406 ORTHO05D006918 2.6e-42 175.3 92 89.1
PSO384G4971 Papaver somniferum HOM05D000406 ORTHO05D006918 2.6e-42 175.3 104 78.8
PGR031G2785 Punica granatum HOM05D000406 ORTHO05D006918 3.4e-42 174.9 95 85.3
Ca_05376_v3 Cicer arietinum L. HOM05D000406 ORTHO05D006918 4.5e-42 174.5 95 86.3
Nitab4.5_0004107g0020 Nicotiana tabacum HOM05D000406 ORTHO05D006918 5.8e-42 174.1 95 86.3
Peaxi162Scf00009g01535 Petunia axillaris HOM05D000406 ORTHO05D006918 5.8e-42 174.1 95 86.3
PGSC0003DMG400011025 Solanum tuberosum HOM05D000406 ORTHO05D006918 5.8e-42 174.1 95 85.3
GSVIVG01003933001 Vitis vinifera HOM05D000406 ORTHO05D006918 5.8e-42 174.1 99 83.8
AL6G10800 Arabidopsis lyrata HOM05D000406 ORTHO05D006918 7.6e-42 173.7 92 88.0
AT5G01340 Arabidopsis thaliana HOM05D000406 ORTHO05D006918 7.6e-42 173.7 95 86.3
Carub.0006s0048 Capsella rubella HOM05D000406 ORTHO05D006918 7.6e-42 173.7 95 86.3
DCAR_028862 Daucus carota HOM05D000406 ORTHO05D006918 1.3e-41 172.9 92 87.0
Eucgr.A00536 Eucalyptus grandis HOM05D000406 ORTHO05D006918 1.3e-41 172.9 100 83.0
Thhalv10014166m.g Eutrema salsugineum HOM05D000406 ORTHO05D006918 1.3e-41 172.9 102 81.4
A03p00350 Brassica napus HOM05D000406 ORTHO05D006918 1.7e-41 172.6 92 85.9
BraA03t09426Z Brassica rapa HOM05D000406 ORTHO05D006918 1.7e-41 172.6 92 85.9
Solyc10g085220.3 Solanum lycopersicum HOM05D000954 ORTHO05D006918 1.7e-41 172.6 95 85.3
Sopen10g034700 Solanum pennellii HOM05D000406 ORTHO05D006918 1.7e-41 172.6 95 85.3
BcaB01g06224 Brassica carinata HOM05D000406 ORTHO05D006918 2.2e-41 172.2 92 85.9
CDE06G0909 Ceratophyllum demersum HOM05D000406 ORTHO05D006918 2.2e-41 172.2 92 88.0
HanXRQChr16g0521221 Helianthus annuus HOM05D000406 ORTHO05D006918 2.9e-41 171.8 102 78.4
arahy.Tifrunner.gnm1.ann1.F052KA Arachis hypogaea HOM05D000406 ORTHO05D006918 3.8e-41 171.4 107 76.6
C03p00510 Brassica napus HOM05D000406 ORTHO05D006918 3.8e-41 171.4 108 76.9
BolC3t12617H Brassica oleracea HOM05D000406 ORTHO05D006918 3.8e-41 171.4 108 76.9
MBI15_g07345_MAGBIO Magnolia biondii HOM05D000406 ORTHO05D006918 4.9e-41 171.0 92 85.9
arahy.Tifrunner.gnm1.ann1.1L30AV Arachis hypogaea HOM05D000406 ORTHO05D006918 1.4e-40 169.5 95 83.2
Sp6g40650 Schrenkiella parvula HOM05D000406 ORTHO05D006918 1.4e-40 169.5 92 85.9
Ah.12g058850 Amaranthus hybridus HOM05D000406 ORTHO05D006918 2.5e-40 168.7 109 74.3
ATR0681G138 Amborella trichopoda HOM05D000406 ORTHO05D006918 2.5e-40 168.7 107 75.7
EL10Ac5g12535 Beta vulgaris HOM05D000406 ORTHO05D006918 3.2e-40 168.3 95 82.1
HanXRQChr08g0214861 Helianthus annuus HOM05D000406 ORTHO05D006918 3.2e-40 168.3 104 76.9
Os03g0292200 Oryza sativa ssp. japonica HOM05D000406 ORTHO05D006918 3.2e-40 168.3 92 83.7
Lalb_Chr17g0346091 Lupinus albus HOM05D000406 ORTHO05D006918 9.3e-40 166.8 90 85.6
Rhsim04G0104200 Rhododendron simsii HOM05D000406 ORTHO05D006918 1.2e-39 166.4 94 79.8
SEGI_05711 Sequoiadendron giganteum HOM05D000406 ORTHO05D006918 1.2e-39 166.4 93 81.7
ECA238G1930 Erigeron canadensis HOM05D000406 ORTHO05D006918 3.5e-39 164.9 95 82.1
SalBow5G0195 Salvia bowleyana HOM05D000406 ORTHO05D006918 6.0e-39 164.1 91 83.5
SalBow5G2160 Salvia bowleyana HOM05D000406 ORTHO05D006918 6.0e-39 164.1 91 83.5
Zm00001eb013460 Zea mays HOM05D000406 ORTHO05D006918 6.0e-39 164.1 89 84.3
CARHR211700 Cardamine hirsuta HOM05D000406 ORTHO05D006918 1.0e-38 163.3 88 87.5
HanXRQChr09g0253721 Helianthus annuus HOM05D000406 ORTHO05D006918 1.0e-38 163.3 95 80.0
Lsat_1_v5_gn_5_149600 Lactuca sativa HOM05D000406 ORTHO05D006918 8.7e-38 160.2 95 81.1
HPP92_012033 Vanilla planifolia HOM05D000406 ORTHO05D006918 8.7e-38 160.2 102 75.5
SHI12849 Sapria himalayana HOM05D000406 ORTHO05D006918 1.9e-37 159.1 110 70.0
Aqoxy4G02495 Aquilegia oxysepala HOM05D000406 ORTHO05D006918 9.7e-37 156.8 106 68.9
Pp3c11_24700 Physcomitrium patens HOM05D000406 ORTHO05D006918 8.2e-36 153.7 108 68.5
Eucgr.A00542 Eucalyptus grandis HOM05D000406 ORTHO05D006918 6.9e-35 150.6 106 68.9
Mapoly0001s0082 Marchantia polymorpha HOM05D000406 ORTHO05D006918 1.2e-34 149.8 92 76.1
SMO356G0213 Selaginella moellendorffii HOM05D000406 ORTHO05D006918 1.2e-34 149.8 93 73.1
SMO002G0006 Selaginella moellendorffii HOM05D000406 ORTHO05D006918 2.6e-34 148.7 93 72.0
Pp3c3_25290 Physcomitrium patens HOM05D000406 ORTHO05D006918 1.9e-32 142.5 94 71.3
PRCOL_00000280 Prasinoderma coloniale HOM05D000406 ORTHO05D006918 4.2e-32 141.4 89 65.2
Rhsim04G0103700 Rhododendron simsii HOM05D000406 ORTHO05D006918 1.5e-29 132.9 92 70.7
Cc03_g13790 Coffea canephora HOM05D000406 ORTHO05D006918 2.5e-29 132.1 107 68.2
Cre06.g260200 Chlamydomonas reinhardtii HOM05D000406 ORTHO05D006918 4.3e-29 131.3 89 67.4
CBR_g49636 Chara braunii HOM05D000406 ORTHO05D006918 4.5e-26 121.3 102 56.9
Gorai.006G193400 Gossypium raimondii HOM05D000406 ORTHO05D006918 1.8e-14 82.8 109 46.8
Nn2g15856 Nelumbo nucifera HOM05D025232 ORTHO05D011060 6.7e-14 80.9 51 72.5
Haze_21034 Corylus avellana HOM05D000053 ORTHO05D000448 1.1e-08 63.5 70 45.7
MCO16G583 Micromonas commoda HOM05D001367 ORTHO05D005289 1.9e-08 62.8 74 44.6
Haze_27402 Corylus avellana HOM05D000177 ORTHO05D002987 3.2e-08 62.0 57 43.9
PRCOL_00002836 Prasinoderma coloniale HOM05D000177 ORTHO05D002987 5.5e-08 61.2 62 41.9
Prupe.2G034900 Prunus persica HOM05D000406 ORTHO05D006918 5.5e-08 61.2 71 40.8
Sc22g0002560 Simmondsia chinensis HOM05D000406 ORTHO05D006918 7.2e-08 60.8 69 43.5
Cre10.g439050 Chlamydomonas reinhardtii HOM05D000177 ORTHO05D002987 1.2e-07 60.1 84 38.1
SalBow2G3458 Salvia bowleyana HOM05D001142 ORTHO05D004628 2.7e-07 58.9 60 41.7
unitig_736.g22629 Utricularia gibba HOM05D000883 ORTHO05D003260 2.7e-07 58.9 68 42.6
Gohir.D09G171650 Gossypium hirsutum HOM05D000406 ORTHO05D006918 4.7e-07 58.2 31 87.1
AT1G34065 Arabidopsis thaliana HOM05D000883 ORTHO05D003260 8.0e-07 57.4 59 47.5
CARHR033460 Cardamine hirsuta HOM05D000883 ORTHO05D003260 8.0e-07 57.4 59 47.5
Sp1g29340 Schrenkiella parvula HOM05D000883 ORTHO05D003260 8.0e-07 57.4 59 45.8
Aqoxy4G02494 Aquilegia oxysepala HOM05D000406 ORTHO05D006918 1.0e-06 57.0 70 42.9
Carub.0001s3216 Capsella rubella HOM05D000883 ORTHO05D003260 1.0e-06 57.0 59 45.8
vmacro02512 Vaccinium macrocarpon HOM05D000406 ORTHO05D008572 1.4e-06 56.6 62 41.9
Aa31LG6G8270 Aethionema arabicum HOM05D000883 ORTHO05D003260 1.8e-06 56.2 72 38.9
AL1G48570 Arabidopsis lyrata HOM05D000883 ORTHO05D003260 1.8e-06 56.2 59 45.8
PSO478G3026 Papaver somniferum HOM05D000883 ORTHO05D008470 1.8e-06 56.2 87 33.3
EL10Ac6g14779 Beta vulgaris HOM05D000883 ORTHO05D003260 2.3e-06 55.8 59 47.5
Pp3c21_17980 Physcomitrium patens HOM05D001142 ORTHO05D004628 2.3e-06 55.8 61 44.3
CiPaw.02G150400 Carya illinoinensis HOM05D001142 ORTHO05D004628 3.0e-06 55.5 81 37.0
Atru.chr5.1289 Acer truncatum HOM05D000406 ORTHO05D008572 4.0e-06 55.1 62 40.3
Ah.01g021440 Amaranthus hybridus HOM05D001142 ORTHO05D004628 4.0e-06 55.1 66 43.9
BcaB07g33032 Brassica carinata HOM05D000883 ORTHO05D003260 4.0e-06 55.1 59 44.1
A09p32420 Brassica napus HOM05D000883 ORTHO05D003260 4.0e-06 55.1 59 44.1
BraA09t38782Z Brassica rapa HOM05D000883 ORTHO05D003260 4.0e-06 55.1 59 44.1
DCAR_012431 Daucus carota HOM05D000406 ORTHO05D008572 4.0e-06 55.1 83 37.3
Lalb_Chr16g0389991 Lupinus albus HOM05D000883 ORTHO05D008470 4.0e-06 55.1 79 35.4
Solyc09g031680.3 Solanum lycopersicum HOM05D000406 ORTHO05D002714 4.0e-06 55.1 75 37.3
BolC6t36332H Brassica oleracea HOM05D000883 ORTHO05D003260 5.2e-06 54.7 59 44.1
Ca_17532_v3 Cicer arietinum L. HOM05D000883 ORTHO05D008470 5.2e-06 54.7 103 33.0
Cc01_g20150 Coffea canephora HOM05D000406 ORTHO05D008572 5.2e-06 54.7 68 42.6
Os01g0143100 Oryza sativa ssp. japonica HOM05D000177 ORTHO05D002752 5.2e-06 54.7 58 44.8
Peaxi162Scf00160g01743 Petunia axillaris HOM05D000883 ORTHO05D003260 5.2e-06 54.7 59 42.4
Potri.005G197200 Populus trichocarpa HOM05D000883 ORTHO05D003260 5.2e-06 54.7 59 42.4
THA.LOC104816012 Tarenaya hassleriana HOM05D000883 ORTHO05D003260 5.2e-06 54.7 59 44.1
C06p11960 Brassica napus HOM05D000883 ORTHO05D003260 6.7e-06 54.3 59 44.1
AUR62040907 Chenopodium quinoa HOM05D000406 ORTHO05D003425 6.7e-06 54.3 95 30.5
FAN27G0517 Fragaria x ananassa HOM05D000883 ORTHO05D003260 6.7e-06 54.3 59 45.8
Hma1.2p1_0678F.1_g202040 Hydrangea macrophylla HOM05D000883 ORTHO05D003260 6.7e-06 54.3 59 47.5
Sabra05G0150200 Salix brachista HOM05D000883 ORTHO05D003260 6.7e-06 54.3 59 42.4
SMO347G0166 Selaginella moellendorffii HOM05D000406 ORTHO05D002216 6.7e-06 54.3 67 34.3
Aa31LG4G190 Aethionema arabicum HOM05D001142 ORTHO05D004628 8.8e-06 53.9 59 45.8
DCAR_001381 Daucus carota HOM05D000883 ORTHO05D003260 8.8e-06 53.9 59 45.8
MD04G1037000 Malus domestica HOM05D000883 ORTHO05D003260 8.8e-06 53.9 74 41.9
Oeu002073.1 Olea europaea HOM05D001519 ORTHO05D003260 8.8e-06 53.9 59 42.4
PGR042G3209 Punica granatum HOM05D000883 ORTHO05D008470 8.8e-06 53.9 87 35.6
Rhsim13G0017800 Rhododendron simsii HOM05D000406 ORTHO05D008572 8.8e-06 53.9 62 41.9
Solyc12g056660.3 Solanum lycopersicum HOM05D000883 ORTHO05D003260 8.8e-06 53.9 59 42.4
Sopen09g014640 Solanum pennellii HOM05D000406 ORTHO05D002714 8.8e-06 53.9 75 36.0
Sopen12g029320 Solanum pennellii HOM05D000883 ORTHO05D003260 8.8e-06 53.9 59 42.4
PGSC0003DMG401018790 Solanum tuberosum HOM05D000883 ORTHO05D003260 8.8e-06 53.9 59 42.4
HPP92_015170 Vanilla planifolia HOM05D000883 ORTHO05D008470 8.8e-06 53.9 98 30.6


User provided reference genes

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