Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc248.7 Carica papaya HOM05D005289 ORTHO05D006346 1.7e-86 322.8 178 100.0
Manes.16G039900 Manihot esculenta HOM05D005289 ORTHO05D006346 8.2e-33 144.4 124 62.9
CSS0022575 Camellia sinensis var. sinensis HOM05D005289 ORTHO05D006346 1.1e-32 144.1 100 71.0
THA.LOC104800596 Tarenaya hassleriana HOM05D005289 ORTHO05D006346 1.4e-32 143.7 185 54.1
Manes.16G000200 Manihot esculenta HOM05D005289 ORTHO05D006346 2.4e-32 142.9 126 61.1
Manes.16G040000 Manihot esculenta HOM05D005289 ORTHO05D006346 9.0e-32 141.0 124 60.5
PSO063G1455 Papaver somniferum HOM05D005289 ORTHO05D006346 3.4e-31 139.0 124 56.5
A02p40970 Brassica napus HOM05D005289 ORTHO05D006346 7.6e-31 137.9 143 53.1
Dinv43423 Davidia involucrata HOM05D005289 ORTHO05D006346 7.6e-31 137.9 80 78.8
Gohir.D02G191500 Gossypium hirsutum HOM05D005289 ORTHO05D006346 7.6e-31 137.9 171 52.0
Gorai.005G214300 Gossypium raimondii HOM05D005289 ORTHO05D006346 7.6e-31 137.9 171 52.0
TAR376G0259 Trochodendron aralioides HOM05D005289 ORTHO05D006346 7.6e-31 137.9 120 60.0
BraA02t09045Z Brassica rapa HOM05D005289 ORTHO05D006346 1.0e-30 137.5 143 53.8
Carub.0006s2124 Capsella rubella HOM05D005289 ORTHO05D006346 1.7e-30 136.7 82 73.2
Dinv09331 Davidia involucrata HOM05D005289 ORTHO05D006346 1.7e-30 136.7 114 62.3
Gohir.A03G168400 Gossypium hirsutum HOM05D005289 ORTHO05D006346 1.7e-30 136.7 171 50.9
PGR142G2143 Punica granatum HOM05D005289 ORTHO05D006346 2.9e-30 136.0 119 59.7
Rhsim07G0056900 Rhododendron simsii HOM05D005289 ORTHO05D006346 3.8e-30 135.6 159 50.3
RhsimUnG0144200 Rhododendron simsii HOM05D005289 ORTHO05D006346 3.8e-30 135.6 161 49.7
Thhalv10005472m.g Eutrema salsugineum HOM05D005289 ORTHO05D006346 5.0e-30 135.2 187 49.2
PSO782G1364 Papaver somniferum HOM05D005289 ORTHO05D006346 5.0e-30 135.2 124 57.3
FAN07G0133 Fragaria x ananassa HOM05D005289 ORTHO05D006346 6.5e-30 134.8 130 56.9
FAN07G0378 Fragaria x ananassa HOM05D005289 ORTHO05D006346 6.5e-30 134.8 130 56.9
MD16G1005600 Malus domestica HOM05D005289 ORTHO05D006346 6.5e-30 134.8 122 57.4
CARHR190070 Cardamine hirsuta HOM05D005289 ORTHO05D006346 8.5e-30 134.4 188 48.4
Cfa018663 Carpinus fangiana HOM05D005289 ORTHO05D006346 8.5e-30 134.4 83 74.7
FAN17G1203 Fragaria x ananassa HOM05D005289 ORTHO05D006346 1.9e-29 133.3 130 56.2
MBI03_g11910_MAGBIO Magnolia biondii HOM05D005289 ORTHO05D006346 1.9e-29 133.3 163 50.9
Prupe.1G352600 Prunus persica HOM05D005289 ORTHO05D006346 1.9e-29 133.3 137 54.7
C02p60860 Brassica napus HOM05D005289 ORTHO05D006346 2.5e-29 132.9 170 47.1
TWI77G0922 Tripterygium wilfordii HOM05D005289 ORTHO05D006346 2.5e-29 132.9 179 49.2
vmacro13683 Vaccinium macrocarpon HOM05D005289 ORTHO05D006346 2.5e-29 132.9 153 51.6
CANSAT78G0451 Cannabis sativa HOM05D005289 ORTHO05D006346 3.2e-29 132.5 78 76.9
Duzib248G0326 Durio zibethinus HOM05D005289 ORTHO05D006346 3.2e-29 132.5 174 50.6
Nn7g38127 Nelumbo nucifera HOM05D005289 ORTHO05D006346 3.2e-29 132.5 182 48.4
Sp2g23720 Schrenkiella parvula HOM05D005289 ORTHO05D006346 3.2e-29 132.5 131 54.2
CiPaw.16G000100 Carya illinoinensis HOM05D005289 ORTHO05D006346 4.2e-29 132.1 137 51.8
FvH4_4g37381 Fragaria vesca HOM05D005289 ORTHO05D006346 4.2e-29 132.1 158 50.0
RcHm_v2.0_Chr4g0447301 Rosa chinensis HOM05D005289 ORTHO05D006346 5.5e-29 131.7 141 51.1
MD13G1000200 Malus domestica HOM05D005289 ORTHO05D006346 7.2e-29 131.3 122 56.6
AL6G34730 Arabidopsis lyrata HOM05D005289 ORTHO05D006346 9.3e-29 131.0 188 47.3
Aa31LG3G18150 Aethionema arabicum HOM05D005289 ORTHO05D006346 1.2e-28 130.6 121 56.2
BcaB01g05597 Brassica carinata HOM05D005289 ORTHO05D006346 1.2e-28 130.6 192 45.8
A03p03840 Brassica napus HOM05D002331 ORTHO05D002624 1.2e-28 130.6 187 47.1
BolC2t12138H Brassica oleracea HOM05D005289 ORTHO05D006346 1.2e-28 130.6 170 47.1
BraA03t09731Z Brassica rapa HOM05D002331 ORTHO05D002624 1.6e-28 130.2 185 45.9
ClCG11G012840 Citrullus lanatus HOM05D005289 ORTHO05D006346 2.1e-28 129.8 78 74.4
Manes.14G174500 Manihot esculenta HOM05D005289 ORTHO05D006346 2.7e-28 129.4 80 73.8
Sc06g0007700 Simmondsia chinensis HOM05D005289 ORTHO05D006346 2.7e-28 129.4 143 53.8
Duzib132G0443 Durio zibethinus HOM05D005289 ORTHO05D006346 3.6e-28 129.0 175 48.6
THA.LOC104819368 Tarenaya hassleriana HOM05D005289 ORTHO05D006346 6.1e-28 128.3 73 79.5
VMungo0464G1452 Vigna mungo HOM05D005289 ORTHO05D006346 7.9e-28 127.9 146 48.6
Lsat_1_v5_gn_4_31280 Lactuca sativa HOM05D007122 ORTHO05D008918 1.0e-27 127.5 136 53.7
Sed0001576 Sechium edule HOM05D005289 ORTHO05D006346 1.0e-27 127.5 110 59.1
Sed0008094 Sechium edule HOM05D005289 ORTHO05D006346 1.0e-27 127.5 77 72.7
AT5G23440 Arabidopsis thaliana HOM05D005289 ORTHO05D006346 1.3e-27 127.1 188 44.7
arahy.Tifrunner.gnm1.ann1.CPCZ9R Arachis hypogaea HOM05D005289 ORTHO05D006346 2.3e-27 126.3 181 44.8
C03p04320 Brassica napus HOM05D005289 ORTHO05D006346 2.3e-27 126.3 193 44.6
BolC3t12965H Brassica oleracea HOM05D005289 ORTHO05D006346 2.3e-27 126.3 193 44.6
HanXRQChr17g0563021 Helianthus annuus HOM05D005289 ORTHO05D006346 2.3e-27 126.3 163 47.9
Hund08591 Selenicereus undatus HOM05D005289 ORTHO05D006346 2.3e-27 126.3 180 45.6
Lsat_1_v5_gn_4_31381 Lactuca sativa HOM05D005289 ORTHO05D006346 3.9e-27 125.6 151 51.0
BcaB01g05599 Brassica carinata HOM05D005289 ORTHO05D006346 5.1e-27 125.2 180 47.8
Carub.0006s0732 Capsella rubella HOM05D005289 ORTHO05D006346 5.1e-27 125.2 135 53.3
CARHR204630 Cardamine hirsuta HOM05D005289 ORTHO05D006346 6.7e-27 124.8 158 51.3
Thecc.02G151000 Theobroma cacao HOM05D005289 ORTHO05D006346 6.7e-27 124.8 151 51.0
Lj9P634T19 Lonicera japonica HOM05D005289 ORTHO05D006346 8.8e-27 124.4 104 60.6
AT5G08410 Arabidopsis thaliana HOM05D005289 ORTHO05D006346 1.1e-26 124.0 192 43.8
QL01p000104 Quercus lobata HOM05D005289 ORTHO05D006346 1.1e-26 124.0 131 55.7
Actinidia31077 Actinidia chinensis HOM05D005289 ORTHO05D006346 4.3e-26 122.1 108 61.1
Ah.15g093460 Amaranthus hybridus HOM05D005289 ORTHO05D006346 5.7e-26 121.7 144 46.5
AL6G18870 Arabidopsis lyrata HOM05D005289 ORTHO05D006346 5.7e-26 121.7 162 49.4
Ciclev10017019m.g Citrus clementina HOM05D005289 ORTHO05D006346 5.7e-26 121.7 179 44.7
Eucgr.G02623 Eucalyptus grandis HOM05D005289 ORTHO05D006346 7.4e-26 121.3 158 51.3
Thhalv10014787m.g Eutrema salsugineum HOM05D005289 ORTHO05D006346 7.4e-26 121.3 187 43.9
Hma1.2p1_2160F.1_g315560 Hydrangea macrophylla HOM05D005289 ORTHO05D006346 9.7e-26 120.9 173 46.8
Lj2g0002318 Lotus japonicus HOM05D005289 ORTHO05D006346 9.7e-26 120.9 170 45.3
Atru.chr11.6 Acer truncatum HOM05D005289 ORTHO05D006346 1.3e-25 120.6 163 45.4
Phvul.004G000400 Phaseolus vulgaris HOM05D005289 ORTHO05D006346 1.3e-25 120.6 176 40.3
Aqoxy3G04359 Aquilegia oxysepala HOM05D005289 ORTHO05D006346 4.8e-25 118.6 155 45.2
MELO3C011776.2 Cucumis melo HOM05D004444 ORTHO05D005246 4.8e-25 118.6 171 44.4
ECA234G0076 Erigeron canadensis HOM05D005289 ORTHO05D006346 4.8e-25 118.6 118 55.9
CsaV3_5G029240 Cucumis sativus L. HOM05D005289 ORTHO05D006346 1.4e-24 117.1 173 43.9
DCAR_006352 Daucus carota HOM05D005289 ORTHO05D006346 5.3e-24 115.2 185 43.8
Eucgr.J00323 Eucalyptus grandis HOM05D005289 ORTHO05D006346 5.3e-24 115.2 144 47.9
Glyma.19G000200 Glycine max HOM05D005289 ORTHO05D006346 5.3e-24 115.2 93 60.2
Ca_04131_v3 Cicer arietinum L. HOM05D005289 ORTHO05D006346 9.1e-24 114.4 136 51.5
Os02g0638300 Oryza sativa ssp. japonica HOM05D005289 ORTHO05D006346 1.2e-23 114.0 80 62.5
Oeu049005.1 Olea europaea HOM05D005289 ORTHO05D006346 1.5e-23 113.6 92 62.0
Zm00001eb248360 Zea mays HOM05D005289 ORTHO05D006346 3.4e-23 112.5 98 53.1
Glyma.05G000300 Glycine max HOM05D005289 ORTHO05D006346 5.9e-23 111.7 140 45.7
SalBow6G0941 Salvia bowleyana HOM05D005289 ORTHO05D006346 5.9e-23 111.7 115 55.7
Solyc01g087520.3 Solanum lycopersicum HOM05D005289 ORTHO05D006346 7.7e-23 111.3 103 56.3
AUR62028426 Chenopodium quinoa HOM05D005289 ORTHO05D006346 1.3e-22 110.5 77 63.6
Sp6g34530 Schrenkiella parvula HOM05D005289 ORTHO05D006346 1.3e-22 110.5 191 41.9
TPR.G25213 Trifolium pratense HOM05D005289 ORTHO05D006346 1.3e-22 110.5 90 64.4
PGR044G1862 Punica granatum HOM05D005289 ORTHO05D006346 2.2e-22 109.8 152 46.7
PGSC0003DMG400006858 Solanum tuberosum HOM05D005289 ORTHO05D006346 2.2e-22 109.8 103 56.3
Cc02_g28180 Coffea canephora HOM05D005289 ORTHO05D006346 2.9e-22 109.4 165 43.6
Gohir.A12G011400 Gossypium hirsutum HOM05D005289 ORTHO05D006346 2.9e-22 109.4 70 70.0
MD10G1109200 Malus domestica HOM05D005289 ORTHO05D006346 2.9e-22 109.4 70 68.6
Oeu049492.1 Olea europaea HOM05D005289 ORTHO05D006346 5.0e-22 108.6 120 53.3
CAN.G219.47 Capsicum annuum HOM05D005289 ORTHO05D006346 6.5e-22 108.2 82 62.2
AUR62038497 Chenopodium quinoa HOM05D005289 ORTHO05D006346 6.5e-22 108.2 138 43.5
Migut.N01609 Erythranthe guttata HOM05D005289 ORTHO05D006346 6.5e-22 108.2 92 57.6
CDE11G0284 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 8.5e-22 107.8 167 40.7
Zm00001eb185670 Zea mays HOM05D005289 ORTHO05D006346 8.5e-22 107.8 80 60.0
Gohir.D12G011800 Gossypium hirsutum HOM05D005289 ORTHO05D006346 1.1e-21 107.5 68 70.6
Gorai.008G011800 Gossypium raimondii HOM05D005289 ORTHO05D006346 1.1e-21 107.5 68 70.6
Medtr6g004100 Medicago truncatula HOM05D005289 ORTHO05D006346 1.9e-21 106.7 136 48.5
SEGI_30396 Sequoiadendron giganteum HOM05D005289 ORTHO05D006346 1.9e-21 106.7 78 62.8
SGA_v2.0_scaffold24G10667 Striga asiatica HOM05D005289 ORTHO05D006346 1.9e-21 106.7 118 51.7
HPP92_004266 Vanilla planifolia HOM05D005289 ORTHO05D006346 1.9e-21 106.7 176 39.8
ATR0124G002 Amborella trichopoda HOM05D005289 ORTHO05D006346 7.2e-21 104.8 82 61.0
Sopen01g034490 Solanum pennellii HOM05D005289 ORTHO05D006346 9.4e-21 104.4 141 45.4
unitig_699.g19828 Utricularia gibba HOM05D005289 ORTHO05D006346 9.4e-21 104.4 121 51.2
CDE05G2330 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 1.6e-20 103.6 157 40.8
Potri.010G255500 Populus trichocarpa HOM05D005289 ORTHO05D006346 1.6e-20 103.6 81 63.0
AagrBONN_evm.TU.Sc2ySwM_368.462 Anthoceros agrestis HOM05D000595 ORTHO05D006346 2.1e-20 103.2 108 51.9
A06p34430 Brassica napus HOM05D005289 ORTHO05D006346 2.7e-20 102.8 120 51.7
BraA06t26372Z Brassica rapa HOM05D005289 ORTHO05D006346 2.7e-20 102.8 120 51.7
Os04g0528800 Oryza sativa ssp. japonica HOM05D005289 ORTHO05D006346 2.7e-20 102.8 166 40.4
Zm00001eb075910 Zea mays HOM05D005289 ORTHO05D006346 2.7e-20 102.8 101 50.5
Sabra08G0000100 Salix brachista HOM05D005289 ORTHO05D006346 4.7e-20 102.1 81 63.0
Nitab4.5_0000707g0260 Nicotiana tabacum HOM05D005289 ORTHO05D006346 7.9e-20 101.3 141 47.5
Nitab4.5_0006228g0010 Nicotiana tabacum HOM05D005289 ORTHO05D006346 1.0e-19 100.9 154 46.1
Potri.008G002200 Populus trichocarpa HOM05D005289 ORTHO05D006346 1.0e-19 100.9 81 61.7
MSTRG.5030 Avicennia marina HOM05D005289 ORTHO05D006346 1.8e-19 100.1 144 46.5
AagrBONN_evm.TU.Sc2ySwM_344.750 Anthoceros agrestis HOM05D005289 ORTHO05D006346 3.9e-19 99.0 144 42.4
Sabra10G0198900 Salix brachista HOM05D005289 ORTHO05D006346 3.9e-19 99.0 116 49.1
SMO367G0363 Selaginella moellendorffii HOM05D005289 ORTHO05D006346 1.5e-18 97.1 75 57.3
Oeu006561.1 Olea europaea HOM05D005289 ORTHO05D006346 3.3e-18 95.9 165 40.6
CDE01G0630 Ceratophyllum demersum HOM05D000556 ORTHO05D006346 2.2e-17 93.2 127 46.5
EL10Ac1g01282 Beta vulgaris HOM05D005289 ORTHO05D006346 3.7e-17 92.4 110 48.2
MSTRG.28061 Avicennia marina HOM05D005289 ORTHO05D006346 4.1e-16 89.0 91 52.7
Mapoly0005s0050 Marchantia polymorpha HOM05D005289 ORTHO05D006346 3.4e-15 85.9 160 36.2
Pp3c26_13800 Physcomitrium patens HOM05D005289 ORTHO05D006346 2.5e-13 79.7 93 46.2
Pp3c26_13840 Physcomitrium patens HOM05D005289 ORTHO05D006346 2.5e-13 79.7 93 46.2
Peaxi162Scf00019g00006 Petunia axillaris HOM05D005289 ORTHO05D006346 7.2e-13 78.2 122 41.8
CBR_g32063 Chara braunii HOM05D005289 ORTHO05D006346 1.6e-12 77.0 142 38.7
Pp3c4_31020 Physcomitrium patens HOM05D005289 ORTHO05D006346 3.6e-12 75.9 167 35.3
Pp3c4_29510 Physcomitrium patens HOM05D005289 ORTHO05D006346 4.7e-12 75.5 98 40.8
Psat1g053320 Pisum sativum HOM05D005289 ORTHO05D006346 7.4e-10 68.2 80 48.8
Ah.08g214580 Amaranthus hybridus HOM05D005289 ORTHO05D006346 1.2e-07 60.8 112 36.6
Cre16.g687294 Chlamydomonas reinhardtii HOM05D005289 ORTHO05D006346 5.9e-07 58.5 75 42.7
Actinidia19406 Actinidia chinensis HOM05D005289 ORTHO05D006346 8.5e-06 54.7 35 74.3


User provided reference genes

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