Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc2478.1 Carica papaya HOM05D004271 ORTHO05D006011 7.5e-123 444.5 348 100.0
Cpa.g.sc4173.1 Carica papaya HOM05D004271 ORTHO05D006011 7.5e-123 444.5 348 100.0
QL11p014332 Quercus lobata HOM05D004271 ORTHO05D006011 1.9e-70 270.4 282 51.4
TWI59G0252 Tripterygium wilfordii HOM05D004271 ORTHO05D006011 3.8e-66 256.1 279 71.0
arahy.Tifrunner.gnm1.ann1.58SQTR Arachis hypogaea HOM05D004271 ORTHO05D006011 5.4e-65 252.3 280 46.4
CANSAT80G1557 Cannabis sativa HOM05D004271 ORTHO05D006011 5.4e-65 252.3 282 69.9
Cpa.g.sc374.1 Carica papaya HOM05D004271 ORTHO05D006011 9.3e-65 251.5 173 76.9
CiPaw.02G044800 Carya illinoinensis HOM05D004271 ORTHO05D006011 3.5e-64 249.6 279 69.5
arahy.Tifrunner.gnm1.ann1.62512W Arachis hypogaea HOM05D004271 ORTHO05D006011 1.0e-63 248.1 280 45.7
QL11p015204 Quercus lobata HOM05D004271 ORTHO05D006011 1.0e-63 248.1 211 69.2
QL11p014962 Quercus lobata HOM05D004271 ORTHO05D006011 8.7e-63 245.0 282 52.1
Ca_25358_v3 Cicer arietinum L. HOM05D004271 ORTHO05D006011 1.1e-62 244.6 279 55.2
VMungo0464G1245 Vigna mungo HOM05D004271 ORTHO05D006011 1.1e-62 244.6 279 46.6
PGR044G1707 Punica granatum HOM05D004271 ORTHO05D006011 1.5e-62 244.2 286 56.6
QL06p019283 Quercus lobata HOM05D004271 ORTHO05D006011 3.3e-62 243.0 211 66.4
Lalb_Chr13g0291111 Lupinus albus HOM05D004271 ORTHO05D006011 4.3e-62 242.7 281 62.3
Psat1g029400 Pisum sativum HOM05D004271 ORTHO05D006011 1.6e-61 240.7 280 51.4
AL1G15500 Arabidopsis lyrata HOM05D004271 ORTHO05D006011 2.4e-60 236.9 211 64.5
Prupe.2G028400 Prunus persica HOM05D004271 ORTHO05D006011 6.9e-60 235.3 336 72.0
A10p04360 Brassica napus HOM05D004271 ORTHO05D006011 2.0e-59 233.8 209 64.6
BraA10t42703Z Brassica rapa HOM05D004271 ORTHO05D006011 2.0e-59 233.8 209 64.6
BcaC05g24360 Brassica carinata HOM05D004271 ORTHO05D006011 2.6e-59 233.4 209 64.1
BolC5t29174H Brassica oleracea HOM05D004271 ORTHO05D006011 2.6e-59 233.4 209 64.1
C05p03960 Brassica napus HOM05D004271 ORTHO05D006011 3.4e-59 233.0 209 65.1
Medtr5g048070 Medicago truncatula HOM05D004271 ORTHO05D006011 3.4e-59 233.0 280 50.4
FAN06G1186 Fragaria x ananassa HOM05D004271 ORTHO05D006011 7.6e-59 231.9 345 70.4
Hund17105 Selenicereus undatus HOM05D004271 ORTHO05D006011 2.2e-58 230.3 209 65.6
Aa31LG1G19040 Aethionema arabicum HOM05D004271 ORTHO05D006011 8.4e-58 228.4 209 63.2
FvH4_7g16930 Fragaria vesca HOM05D004271 ORTHO05D006011 1.4e-57 227.6 345 70.1
BcaB02g06837 Brassica carinata HOM05D004271 ORTHO05D006011 1.9e-57 227.3 208 63.5
FAN01G0423 Fragaria x ananassa HOM05D004271 ORTHO05D006011 1.9e-57 227.3 345 70.4
FAN06G5063 Fragaria x ananassa HOM05D004271 ORTHO05D006011 1.9e-57 227.3 345 70.1
Medtr6g071320 Medicago truncatula HOM05D004271 ORTHO05D006011 1.9e-57 227.3 279 51.6
Carub.0001s0493 Capsella rubella HOM05D004271 ORTHO05D006011 2.4e-57 226.9 211 63.5
MD12G1085500 Malus domestica HOM05D004271 ORTHO05D006011 3.2e-57 226.5 340 67.4
Ciclev10019806m.g Citrus clementina HOM05D004271 ORTHO05D006011 7.1e-57 225.3 348 51.7
Aqoxy5G00466 Aquilegia oxysepala HOM05D004271 ORTHO05D006011 1.6e-56 224.2 278 55.0
Sp1g04450 Schrenkiella parvula HOM05D004271 ORTHO05D006011 2.1e-56 223.8 209 62.7
Thhalv10007424m.g Eutrema salsugineum HOM05D004271 ORTHO05D006011 4.6e-56 222.6 280 67.9
AUR62020973 Chenopodium quinoa HOM05D004271 ORTHO05D006011 5.1e-55 219.2 209 61.7
GSVIVG01027435001 Vitis vinifera HOM05D004271 ORTHO05D006011 6.7e-55 218.8 186 69.4
AUR62043199 Chenopodium quinoa HOM05D004271 ORTHO05D006011 8.7e-55 218.4 203 63.1
Lj6P606T31 Lonicera japonica HOM05D004271 ORTHO05D006011 8.7e-55 218.4 261 69.3
AT1G05600 Arabidopsis thaliana HOM05D004271 ORTHO05D006011 1.1e-54 218.0 211 60.7
TPR.G22318 Trifolium pratense HOM05D004271 ORTHO05D006011 1.5e-54 217.6 281 52.7
Aqoxy1G01532 Aquilegia oxysepala HOM05D004271 ORTHO05D006011 1.9e-54 217.2 278 54.3
Eucgr.K02099 Eucalyptus grandis HOM05D004271 ORTHO05D006011 1.9e-54 217.2 211 55.0
MSTRG.6175 Avicennia marina HOM05D004271 ORTHO05D006011 7.4e-54 215.3 282 57.1
Nn1g05237 Nelumbo nucifera HOM05D004271 ORTHO05D006011 7.4e-54 215.3 202 63.4
Lj2g0009525 Lotus japonicus HOM05D004271 ORTHO05D006011 8.1e-53 211.8 167 70.1
Potri.002G179300 Populus trichocarpa HOM05D004271 ORTHO05D006011 2.4e-52 210.3 162 74.7
Sabra02G0134600 Salix brachista HOM05D004271 ORTHO05D006011 5.3e-52 209.1 159 76.1
CARHR005100 Cardamine hirsuta HOM05D004271 ORTHO05D006011 6.9e-52 208.8 190 61.1
ECA234G2429 Erigeron canadensis HOM05D004271 ORTHO05D006011 1.2e-51 208.0 197 51.3
Cc11_g01170 Coffea canephora HOM05D004271 ORTHO05D006011 3.4e-51 206.5 202 61.4
Gohir.D12G039800 Gossypium hirsutum HOM05D004271 ORTHO05D006011 5.8e-51 205.7 279 49.5
Lsat_1_v5_gn_5_104340 Lactuca sativa HOM05D004271 ORTHO05D006011 8.4e-50 201.8 194 58.8
Glyma.09G172300 Glycine max HOM05D004271 ORTHO05D006011 1.1e-49 201.4 166 58.4
RcHm_v2.0_Chr1g0360171 Rosa chinensis HOM05D004271 ORTHO05D006011 2.1e-48 197.2 347 64.3
SGA_v2.0_scaffold66G22520 Striga asiatica HOM05D004271 ORTHO05D006011 2.1e-48 197.2 215 61.9
Thecc.02G040900 Theobroma cacao HOM05D004271 ORTHO05D006011 4.6e-48 196.1 282 64.9
Cfa003738 Carpinus fangiana HOM05D004271 ORTHO05D006011 6.0e-48 195.7 282 63.5
Hma1.2p1_1427F.1_g282910 Hydrangea macrophylla HOM05D004271 ORTHO05D006011 1.3e-47 194.5 166 67.5
Gorai.008G041500 Gossypium raimondii HOM05D004271 ORTHO05D006011 3.9e-47 193.0 162 71.0
COL.COLO4_17892 Corchorus olitorius HOM05D004271 ORTHO05D006011 6.7e-47 192.2 166 69.3
Duzib052G0775 Durio zibethinus HOM05D004271 ORTHO05D006011 6.7e-47 192.2 159 72.3
CAN.G177.21 Capsicum annuum HOM05D004271 ORTHO05D006011 4.3e-46 189.5 168 55.4
FAN03G0025 Fragaria x ananassa HOM05D004271 ORTHO05D006011 4.3e-46 189.5 345 62.0
Hma1.2p1_0922F.1_g236940 Hydrangea macrophylla HOM05D004271 ORTHO05D006011 9.6e-46 188.3 163 66.9
Atru.chr5.763 Acer truncatum HOM05D004271 ORTHO05D006011 1.3e-45 188.0 344 64.8
Haze_15730 Corylus avellana HOM05D004271 ORTHO05D006011 1.6e-45 187.6 159 70.4
Phvul.004G147700 Phaseolus vulgaris HOM05D004271 ORTHO05D006011 1.6e-45 187.6 157 58.6
Hma1.2p1_1112F.1_g258610 Hydrangea macrophylla HOM05D004271 ORTHO05D006011 3.7e-45 186.4 157 68.8
TAR375G0273 Trochodendron aralioides HOM05D004271 ORTHO05D006011 3.7e-45 186.4 162 70.4
vmacro12640 Vaccinium macrocarpon HOM05D004271 ORTHO05D006011 4.8e-45 186.0 281 43.1
EL10Ac3g07373 Beta vulgaris HOM05D004271 ORTHO05D006011 8.2e-45 185.3 166 68.1
CSS0030036 Camellia sinensis var. sinensis HOM05D004271 ORTHO05D006011 1.1e-44 184.9 157 68.2
Migut.J01410 Erythranthe guttata HOM05D004271 ORTHO05D006011 1.1e-44 184.9 203 60.6
MBI12_g14810_MAGBIO Magnolia biondii HOM05D004271 ORTHO05D006011 1.8e-44 184.1 202 55.9
SalBow6G2521 Salvia bowleyana HOM05D004271 ORTHO05D006011 1.8e-44 184.1 200 59.0
Oeu017054.1 Olea europaea HOM05D004271 ORTHO05D006011 3.1e-44 183.3 202 54.0
Actinidia28087 Actinidia chinensis HOM05D004271 ORTHO05D006011 4.1e-44 183.0 153 68.6
PGSC0003DMG400017403 Solanum tuberosum HOM05D004271 ORTHO05D006011 9.0e-44 181.8 200 53.5
FAN10G2969 Fragaria x ananassa HOM05D004271 ORTHO05D006011 1.5e-43 181.0 276 62.7
Manes.01G240200 Manihot esculenta HOM05D004271 ORTHO05D006011 2.0e-43 180.6 282 61.7
DCAR_030646 Daucus carota HOM05D004271 ORTHO05D006011 3.4e-43 179.9 198 48.0
FAN10G3574 Fragaria x ananassa HOM05D004271 ORTHO05D006011 5.9e-43 179.1 276 62.3
SHI34133 Sapria himalayana HOM05D004271 ORTHO05D006011 1.0e-42 178.3 281 54.4
Sc23g0001810 Simmondsia chinensis HOM05D004271 ORTHO05D006011 1.3e-42 177.9 281 61.9
Ah.04g150020 Amaranthus hybridus HOM05D004271 ORTHO05D006011 3.8e-42 176.4 167 66.5
Sopen07g023920 Solanum pennellii HOM05D004271 ORTHO05D006011 6.5e-42 175.6 200 56.0
Glyma.14G108600 Glycine max HOM05D004271 ORTHO05D006011 1.4e-41 174.5 155 55.5
Rhsim01G0180200 Rhododendron simsii HOM05D004271 ORTHO05D006011 3.6e-40 169.9 157 61.8
Dinv20850 Davidia involucrata HOM05D004271 ORTHO05D006011 1.0e-39 168.3 143 70.6
Sp4g07390 Schrenkiella parvula HOM05D004271 ORTHO05D006011 3.0e-39 166.8 190 48.9
HanXRQChr10g0294731 Helianthus annuus HOM05D004271 ORTHO05D006011 3.9e-39 166.4 147 66.7
CDE07G0885 Ceratophyllum demersum HOM05D004271 ORTHO05D006011 3.7e-37 159.8 208 50.0
HPP92_007271 Vanilla planifolia HOM05D004271 ORTHO05D006011 2.2e-34 150.6 213 39.4
Glyma.07G105800 Glycine max HOM05D004271 ORTHO05D006011 3.2e-33 146.7 121 58.7
Os01g0913800 Oryza sativa ssp. japonica HOM05D004271 ORTHO05D006011 1.6e-32 144.4 205 45.9
Solyc07g045380.3 Solanum lycopersicum HOM05D004271 ORTHO05D006011 1.6e-32 144.4 200 50.0
Aqoxy1G01531 Aquilegia oxysepala HOM05D004271 ORTHO05D006011 7.4e-30 135.6 209 36.8
QL11p014366 Quercus lobata HOM05D004271 ORTHO05D006011 2.2e-29 134.0 121 59.5
Zm00001eb364960 Zea mays HOM05D004271 ORTHO05D006011 2.6e-27 127.1 197 35.5
CDE07G1345 Ceratophyllum demersum HOM05D004271 ORTHO05D006011 3.4e-27 126.7 208 44.2
MELO3C022307.2 Cucumis melo HOM05D004271 ORTHO05D006011 7.7e-27 125.6 146 47.9
CsaV3_6G008310 Cucumis sativus L. HOM05D004271 ORTHO05D006011 5.0e-26 122.9 146 46.6
ClCG06G002250 Citrullus lanatus HOM05D004271 ORTHO05D006011 6.5e-26 122.5 147 46.3
Sed0025263 Sechium edule HOM05D004271 ORTHO05D006011 2.6e-22 110.5 143 43.4
Peaxi162Scf00542g00067 Petunia axillaris HOM05D004271 ORTHO05D006011 7.4e-22 109.0 200 42.0
SHI19587 Sapria himalayana HOM05D004271 ORTHO05D006011 7.0e-20 102.4 103 48.5
Gohir.A12G032800 Gossypium hirsutum HOM05D004271 ORTHO05D006011 2.2e-18 97.4 200 51.5
ATR0078G009 Amborella trichopoda HOM05D004271 ORTHO05D006011 4.2e-17 93.2 145 35.9
unitig_0.g565 Utricularia gibba HOM05D000318 ORTHO05D000420 1.0e-15 88.6 110 60.9
HPP92_007254 Vanilla planifolia HOM05D004271 ORTHO05D006011 4.0e-15 86.7 101 57.4
FvH4_4g01580 Fragaria vesca HOM05D004271 ORTHO05D006011 1.1e-12 78.6 74 52.7
Dinv20851 Davidia involucrata HOM05D004271 ORTHO05D006011 1.2e-08 65.1 115 68.7
FAN12G1026 Fragaria x ananassa HOM05D004271 ORTHO05D006011 1.6e-08 64.7 66 47.0
Zm00001eb118400 Zea mays HOM05D002453 ORTHO05D002107 5.2e-07 59.7 208 22.6
CiPaw.09G023000 Carya illinoinensis HOM05D006596 ORTHO05D008497 3.4e-06 57.0 201 23.4


User provided reference genes

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