Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc245.17 Carica papaya HOM05D003972 ORTHO05D004609 8.5e-97 357.1 188 100.0
TWI09G1021 Tripterygium wilfordii HOM05D003972 ORTHO05D004609 2.3e-65 252.7 249 57.0
Manes.10G143400 Manihot esculenta HOM05D003972 ORTHO05D004609 4.2e-64 248.4 248 57.3
Duzib268G1708 Durio zibethinus HOM05D003972 ORTHO05D004609 5.5e-64 248.1 244 58.2
TWI73G1179 Tripterygium wilfordii HOM05D003972 ORTHO05D004609 1.6e-63 246.5 249 57.0
Thecc.01G411300 Theobroma cacao HOM05D003972 ORTHO05D004609 4.7e-63 245.0 244 57.0
Gorai.008G105300 Gossypium raimondii HOM05D003972 ORTHO05D004609 1.8e-62 243.0 246 57.7
Gohir.D12G096966 Gossypium hirsutum HOM05D003972 ORTHO05D004609 8.8e-62 240.7 246 57.3
Duzib138G0053 Durio zibethinus HOM05D003972 ORTHO05D004609 9.8e-61 237.3 246 54.9
Gohir.A12G094100 Gossypium hirsutum HOM05D003972 ORTHO05D004609 2.2e-60 236.1 246 56.5
Atru.chr11.2659 Acer truncatum HOM05D003972 ORTHO05D004609 1.8e-59 233.0 242 56.2
Hund16627 Selenicereus undatus HOM05D003972 ORTHO05D004609 2.4e-59 232.6 239 56.1
PGR044G2681 Punica granatum HOM05D003972 ORTHO05D004609 3.1e-59 232.3 243 55.6
Nn2g15387 Nelumbo nucifera HOM05D003972 ORTHO05D004609 4.1e-59 231.9 244 55.3
ClCG09G004190 Citrullus lanatus HOM05D003972 ORTHO05D004609 9.2e-59 230.7 249 55.8
CSS0031611 Camellia sinensis var. sinensis HOM05D003972 ORTHO05D004609 2.7e-58 229.2 250 54.4
Prupe.2G012700 Prunus persica HOM05D003972 ORTHO05D004609 4.5e-58 228.4 249 54.6
COL.COLO4_23932 Corchorus olitorius HOM05D003972 ORTHO05D004609 3.8e-57 225.3 274 47.4
MSTRG.28071 Avicennia marina HOM05D003972 ORTHO05D004609 5.0e-57 224.9 241 53.9
MD07G1010400 Malus domestica HOM05D003972 ORTHO05D004609 1.1e-56 223.8 250 53.2
Actinidia20668 Actinidia chinensis HOM05D003972 ORTHO05D004609 1.9e-56 223.0 248 52.8
TAR633G1993 Trochodendron aralioides HOM05D003972 ORTHO05D004609 2.5e-56 222.6 249 52.2
Nn7g36192 Nelumbo nucifera HOM05D003972 ORTHO05D004609 9.5e-56 220.7 244 53.3
MBI04_g36067_MAGBIO Magnolia biondii HOM05D003972 ORTHO05D004609 1.2e-55 220.3 251 51.4
TAR633G2347 Trochodendron aralioides HOM05D003972 ORTHO05D004609 1.2e-55 220.3 249 51.8
CiPaw.13G004600 Carya illinoinensis HOM05D003972 ORTHO05D004609 2.1e-55 219.5 244 52.5
MD02G1312800 Malus domestica HOM05D003972 ORTHO05D004609 3.6e-55 218.8 250 52.0
Rhsim07G0055300 Rhododendron simsii HOM05D003972 ORTHO05D004609 4.7e-55 218.4 246 52.8
PGR042G2196 Punica granatum HOM05D003972 ORTHO05D004609 8.0e-55 217.6 245 53.9
RcHm_v2.0_Chr1g0315911 Rosa chinensis HOM05D003972 ORTHO05D004609 1.0e-54 217.2 249 51.0
Lsat_1_v5_gn_1_107421 Lactuca sativa HOM05D003972 ORTHO05D004609 1.4e-54 216.9 243 50.6
Potri.009G061600 Populus trichocarpa HOM05D003972 ORTHO05D004609 1.4e-54 216.9 248 48.8
Sabra09G0045500 Salix brachista HOM05D003972 ORTHO05D004609 2.3e-54 216.1 248 48.8
Haze_03211 Corylus avellana HOM05D000015 ORTHO05D004609 5.2e-54 214.9 279 48.0
HanXRQChr01g0016231 Helianthus annuus HOM05D003972 ORTHO05D004609 5.2e-54 214.9 244 50.8
Ciclev10032620m.g Citrus clementina HOM05D003972 ORTHO05D004609 6.8e-54 214.5 241 51.0
EL10Ac3g05626 Beta vulgaris HOM05D003972 ORTHO05D004609 8.9e-54 214.2 240 52.5
MSTRG.5022 Avicennia marina HOM05D003972 ORTHO05D004609 1.5e-53 213.4 246 52.0
FvH4_7g01010 Fragaria vesca HOM05D003972 ORTHO05D004609 1.5e-53 213.4 248 51.2
FAN03G0639 Fragaria x ananassa HOM05D003972 ORTHO05D004609 1.5e-53 213.4 250 50.4
FAN06G4274 Fragaria x ananassa HOM05D003972 ORTHO05D004609 1.5e-53 213.4 248 51.2
FAN10G2592 Fragaria x ananassa HOM05D003972 ORTHO05D004609 1.5e-53 213.4 248 51.2
GSVIVG01032087001 Vitis vinifera HOM05D003972 ORTHO05D004609 2.0e-53 213.0 248 51.6
FAN01G2341 Fragaria x ananassa HOM05D003972 ORTHO05D004609 2.6e-53 212.6 250 50.0
Sed0017110 Sechium edule HOM05D003972 ORTHO05D004609 5.7e-53 211.5 249 51.0
PGSC0003DMG400006869 Solanum tuberosum HOM05D003972 ORTHO05D004609 5.7e-53 211.5 240 51.2
CANSAT80G0274 Cannabis sativa HOM05D003972 ORTHO05D004609 9.8e-53 210.7 249 51.4
PSO384G2850 Papaver somniferum HOM05D003972 ORTHO05D004609 1.3e-52 210.3 237 51.1
QL04p006659 Quercus lobata HOM05D003972 ORTHO05D004609 1.3e-52 210.3 207 56.5
PSO339G6021 Papaver somniferum HOM05D003972 ORTHO05D004609 1.7e-52 209.9 237 51.1
MELO3C023548.2 Cucumis melo HOM05D003972 ORTHO05D004609 4.9e-52 208.4 249 49.8
Aqoxy2G00123 Aquilegia oxysepala HOM05D003972 ORTHO05D004609 6.4e-52 208.0 252 48.4
Sopen01g034180 Solanum pennellii HOM05D003972 ORTHO05D004609 8.3e-52 207.6 240 50.0
vmacro13664 Vaccinium macrocarpon HOM05D003972 ORTHO05D004609 1.4e-51 206.8 250 49.2
Solyc01g087120.3 Solanum lycopersicum HOM05D003972 ORTHO05D004609 4.1e-51 205.3 240 49.6
CsaV3_7G031080 Cucumis sativus L. HOM05D003972 ORTHO05D004609 5.4e-51 204.9 249 50.2
CAN.G1560.6 Capsicum annuum HOM05D003972 ORTHO05D004609 7.0e-51 204.5 240 50.8
Nitab4.5_0000634g0150 Nicotiana tabacum HOM05D003972 ORTHO05D004609 1.2e-50 203.8 240 51.2
Oeu047573.1 Olea europaea HOM05D003972 ORTHO05D004609 1.2e-50 203.8 247 49.0
AUR62027419 Chenopodium quinoa HOM05D003972 ORTHO05D004609 1.6e-50 203.4 235 50.6
HanXRQChr16g0524521 Helianthus annuus HOM05D003972 ORTHO05D004609 1.6e-50 203.4 244 48.4
MBI01_g18885_MAGBIO Magnolia biondii HOM05D003972 ORTHO05D004609 2.0e-50 203.0 244 48.8
Hund14179 Selenicereus undatus HOM05D003972 ORTHO05D004609 2.7e-50 202.6 241 49.4
Migut.N01593 Erythranthe guttata HOM05D003972 ORTHO05D004609 5.9e-50 201.4 246 49.2
Peaxi162Scf00428g00211 Petunia axillaris HOM05D003972 ORTHO05D004609 1.3e-49 200.3 243 50.2
AUR62009382 Chenopodium quinoa HOM05D003972 ORTHO05D004609 1.7e-49 199.9 240 48.3
Sed0003633 Sechium edule HOM05D003972 ORTHO05D004609 1.7e-49 199.9 240 50.4
CDE05G0778 Ceratophyllum demersum HOM05D003972 ORTHO05D004609 3.9e-49 198.7 249 44.6
Lsat_1_v5_gn_1_107400 Lactuca sativa HOM05D003972 ORTHO05D004609 3.9e-49 198.7 230 49.6
CDE05G2400 Ceratophyllum demersum HOM05D003972 ORTHO05D004609 6.6e-49 198.0 249 44.6
Glyma.15G273900 Glycine max HOM05D003972 ORTHO05D004609 1.5e-48 196.8 247 48.6
Glyma.08G155200 Glycine max HOM05D003972 ORTHO05D004609 2.5e-48 196.1 247 48.6
Nitab4.5_0002179g0040 Nicotiana tabacum HOM05D003972 ORTHO05D004609 3.3e-48 195.7 275 45.5
SalBow6G4991 Salvia bowleyana HOM05D003972 ORTHO05D004609 5.6e-48 194.9 241 48.5
VMungo1080G1024 Vigna mungo HOM05D003972 ORTHO05D004609 5.6e-48 194.9 244 49.2
Sed0014658 Sechium edule HOM05D003972 ORTHO05D004609 9.5e-48 194.1 225 53.3
Lj7A570T56 Lonicera japonica HOM05D003972 ORTHO05D004609 2.1e-47 193.0 259 45.9
AUR62027358 Chenopodium quinoa HOM05D003972 ORTHO05D004609 3.6e-47 192.2 236 48.3
ECA234G1269 Erigeron canadensis HOM05D005395 ORTHO05D000002 4.7e-47 191.8 237 48.5
THA.LOC104819071 Tarenaya hassleriana HOM05D003972 ORTHO05D004609 6.2e-47 191.4 244 48.0
HPP92_003787 Vanilla planifolia HOM05D003972 ORTHO05D004609 1.1e-46 190.7 240 46.7
ECA248G3800 Erigeron canadensis HOM05D003972 ORTHO05D004609 1.4e-46 190.3 244 47.5
HanXRQChr17g0562951 Helianthus annuus HOM05D003972 ORTHO05D004609 1.4e-46 190.3 244 46.7
Oeu014581.1 Olea europaea HOM05D003972 ORTHO05D004609 3.1e-46 189.1 256 44.9
SalBow8G4898 Salvia bowleyana HOM05D003972 ORTHO05D004609 3.1e-46 189.1 238 47.9
Oeu006575.2 Olea europaea HOM05D003972 ORTHO05D004609 5.2e-46 188.3 245 48.6
THA.LOC104809854 Tarenaya hassleriana HOM05D003972 ORTHO05D004609 5.2e-46 188.3 244 45.5
C09p63620 Brassica napus HOM05D003972 ORTHO05D004609 6.8e-46 188.0 244 48.0
BraA10t44544Z Brassica rapa HOM05D003972 ORTHO05D004609 8.9e-46 187.6 243 47.7
RcHm_v2.0_Chr7g0187561 Rosa chinensis HOM05D003972 ORTHO05D004609 8.9e-46 187.6 255 45.1
Ca_14380_v3 Cicer arietinum L. HOM05D003972 ORTHO05D004609 1.5e-45 186.8 241 46.1
SalBow5G3531 Salvia bowleyana HOM05D003972 ORTHO05D004609 1.5e-45 186.8 251 47.0
Sp6g30570 Schrenkiella parvula HOM05D003972 ORTHO05D004609 1.5e-45 186.8 244 47.1
BolC9t59206H Brassica oleracea HOM05D003972 ORTHO05D004609 2.0e-45 186.4 244 47.1
BraA03t09936Z Brassica rapa HOM05D003972 ORTHO05D004609 2.0e-45 186.4 244 47.1
A10p24800 Brassica napus HOM05D003972 ORTHO05D004609 3.4e-45 185.7 243 47.7
Phvul.005G021000 Phaseolus vulgaris HOM05D003972 ORTHO05D004609 5.8e-45 184.9 247 46.6
Rhsim01G0129500 Rhododendron simsii HOM05D003972 ORTHO05D004609 5.8e-45 184.9 295 40.3
A03p05990 Brassica napus HOM05D003972 ORTHO05D004609 7.5e-45 184.5 244 46.7
Sc11g0009210 Simmondsia chinensis HOM05D003972 ORTHO05D004609 1.7e-44 183.3 192 53.6
ClCG10G012410 Citrullus lanatus HOM05D003972 ORTHO05D004609 2.2e-44 183.0 276 44.2
Ah.06g182390 Amaranthus hybridus HOM05D003972 ORTHO05D004609 3.7e-44 182.2 258 45.7
Medtr3g028730 Medicago truncatula HOM05D003972 ORTHO05D004609 3.7e-44 182.2 241 45.6
ATR0605G205 Amborella trichopoda HOM05D003972 ORTHO05D004609 4.9e-44 181.8 244 45.1
Psat5g207400 Pisum sativum HOM05D003972 ORTHO05D004609 6.4e-44 181.4 240 45.8
Thhalv10014516m.g Eutrema salsugineum HOM05D003972 ORTHO05D004609 8.3e-44 181.0 244 45.5
unitig_8.g3624 Utricularia gibba HOM05D003972 ORTHO05D004609 1.1e-43 180.6 247 44.1
TPR.G12160 Trifolium pratense HOM05D003972 ORTHO05D004609 1.4e-43 180.3 240 43.8
Aa31LG3G15250 Aethionema arabicum HOM05D003972 ORTHO05D004609 1.9e-43 179.9 258 43.0
BcaB01g05358 Brassica carinata HOM05D003972 ORTHO05D004609 1.9e-43 179.9 242 47.1
BcaC04g19115 Brassica carinata HOM05D003972 ORTHO05D004609 2.4e-43 179.5 244 45.9
FAN18G0724 Fragaria x ananassa HOM05D003972 ORTHO05D004609 3.2e-43 179.1 246 44.3
FAN13G3241 Fragaria x ananassa HOM05D003972 ORTHO05D004609 7.0e-43 177.9 257 44.0
arahy.Tifrunner.gnm1.ann1.9I3PL7 Arachis hypogaea HOM05D003972 ORTHO05D004609 1.2e-42 177.2 247 44.5
arahy.Tifrunner.gnm1.ann1.XF35YI Arachis hypogaea HOM05D003972 ORTHO05D004609 1.2e-42 177.2 247 44.5
C03p07030 Brassica napus HOM05D003972 ORTHO05D004609 1.2e-42 177.2 244 46.3
BolC3t13201H Brassica oleracea HOM05D003972 ORTHO05D004609 1.2e-42 177.2 244 46.3
FvH4_5g10590 Fragaria vesca HOM05D003972 ORTHO05D004609 1.2e-42 177.2 257 44.0
Lalb_Chr08g0232821 Lupinus albus HOM05D003972 ORTHO05D004609 1.6e-42 176.8 248 45.6
Carub.0006s1161 Capsella rubella HOM05D003972 ORTHO05D004609 2.7e-42 176.0 244 43.9
Lalb_Chr11g0073961 Lupinus albus HOM05D003972 ORTHO05D004609 2.7e-42 176.0 233 45.5
A02p01940 Brassica napus HOM05D003972 ORTHO05D004609 3.5e-42 175.6 244 45.1
BraA02t05167Z Brassica rapa HOM05D003972 ORTHO05D004609 3.5e-42 175.6 244 45.1
BcaNung01885 Brassica carinata HOM05D003972 ORTHO05D004609 4.6e-42 175.3 244 45.1
FAN04G1554 Fragaria x ananassa HOM05D003972 ORTHO05D004609 1.3e-41 173.7 257 42.8
CARHR199980 Cardamine hirsuta HOM05D003972 ORTHO05D004609 1.7e-41 173.3 244 43.4
Lj4g0010030 Lotus japonicus HOM05D003972 ORTHO05D004609 1.7e-41 173.3 245 44.1
Aa31LG5G18610 Aethionema arabicum HOM05D003972 ORTHO05D004609 2.3e-41 172.9 264 42.4
BcaNung01153 Brassica carinata HOM05D003972 ORTHO05D004609 2.3e-41 172.9 244 44.3
BolC2t06557H Brassica oleracea HOM05D003972 ORTHO05D004609 2.3e-41 172.9 244 44.3
Os06g0646500 Oryza sativa ssp. japonica HOM05D003972 ORTHO05D004609 5.0e-41 171.8 214 46.7
Ah.06g182400 Amaranthus hybridus HOM05D003972 ORTHO05D004609 1.5e-40 170.2 271 42.8
AL6G24070 Arabidopsis lyrata HOM05D003972 ORTHO05D004609 1.5e-40 170.2 244 43.4
AT5G13450 Arabidopsis thaliana HOM05D003972 ORTHO05D004609 1.4e-38 163.7 244 42.6
DCAR_006337 Daucus carota HOM05D003972 ORTHO05D004609 1.8e-38 163.3 244 43.4
vmacro21185 Vaccinium macrocarpon HOM05D003972 ORTHO05D004609 2.2e-36 156.4 353 34.6
SHI04087 Sapria himalayana HOM05D003972 ORTHO05D004609 4.9e-36 155.2 207 44.0
SGA_v2.0_scaffold5G02971 Striga asiatica HOM05D003972 ORTHO05D004609 1.4e-35 153.7 357 32.8
Lj9A631T54 Lonicera japonica HOM05D003972 ORTHO05D004609 9.2e-35 151.0 254 40.6
Zm00001eb188600 Zea mays HOM05D003972 ORTHO05D004609 7.8e-34 147.9 203 44.8
SGA_v2.0_scaffold24G10676 Striga asiatica HOM05D003972 ORTHO05D004609 1.0e-33 147.5 232 41.4
SalBow5G0402 Salvia bowleyana HOM05D003972 ORTHO05D004609 1.3e-33 147.1 243 40.7
Cpa.g.c41216 Carica papaya HOM05D003972 ORTHO05D004609 1.2e-31 140.6 72 98.6
Cc02_g27920 Coffea canephora HOM05D003972 ORTHO05D004609 1.4e-30 137.1 200 43.5
Manes.07G005701 Manihot esculenta HOM05D003972 ORTHO05D004609 7.6e-29 131.3 113 64.6
Eucgr.I01987 Eucalyptus grandis HOM05D003972 ORTHO05D004609 3.2e-27 125.9 140 51.4
SEGI_23171 Sequoiadendron giganteum HOM05D003972 ORTHO05D004609 3.2e-27 125.9 197 38.6
MELO3C030924.2 Cucumis melo HOM05D003972 ORTHO05D004609 1.0e-25 120.9 118 56.8
Dinv43448 Davidia involucrata HOM05D003972 ORTHO05D004609 2.3e-25 119.8 167 47.3
Sc10g0000050 Simmondsia chinensis HOM05D003972 ORTHO05D004609 7.3e-24 114.8 72 77.8
SEGI_22482 Sequoiadendron giganteum HOM05D003972 ORTHO05D004609 1.2e-23 114.0 188 38.3
QL04p007936 Quercus lobata HOM05D003972 ORTHO05D004609 1.6e-23 113.6 80 68.8
Haze_18530 Corylus avellana HOM05D003972 ORTHO05D004609 3.1e-22 109.4 99 58.6
C02p06160 Brassica napus HOM05D003406 ORTHO05D004026 2.6e-21 106.3 72 72.2
CsaV3_3G032190 Cucumis sativus L. HOM05D003972 ORTHO05D004609 1.9e-19 100.1 81 58.0
Pp3c21_15430 Physcomitrium patens HOM05D003972 ORTHO05D004609 1.9e-19 100.1 221 29.9
CsaV3_3G032180 Cucumis sativus L. HOM05D003972 ORTHO05D004609 2.4e-19 99.8 59 81.4
GSVIVG01024256001 Vitis vinifera HOM05D003972 ORTHO05D004609 5.4e-19 98.6 72 70.8
Pp3c21_13430 Physcomitrium patens HOM05D003972 ORTHO05D004609 2.7e-18 96.3 198 30.3
Haze_20480 Corylus avellana HOM05D003972 ORTHO05D004609 3.5e-18 95.9 65 69.2
Mapoly0003s0068 Marchantia polymorpha HOM05D003972 ORTHO05D004609 2.5e-16 89.7 196 30.1
BcaB06g27143 Brassica carinata HOM05D003972 ORTHO05D004609 1.8e-14 83.6 141 39.0
MELO3C030665.2 Cucumis melo HOM05D003972 ORTHO05D004609 1.8e-14 83.6 61 62.3
CBR_g17944 Chara braunii HOM05D003972 ORTHO05D004609 9.0e-14 81.3 187 29.9
Rhsim01G0081100 Rhododendron simsii HOM05D003972 ORTHO05D004609 1.4e-11 73.9 52 73.1
Rhsim01G0052900 Rhododendron simsii HOM05D003972 ORTHO05D004609 2.4e-11 73.2 70 57.1
Rhsim02G0048300 Rhododendron simsii HOM05D003972 ORTHO05D004609 2.4e-11 73.2 52 71.2
Rhsim02G0189700 Rhododendron simsii HOM05D003972 ORTHO05D004609 5.4e-11 72.0 52 71.2
Actinidia21554 Actinidia chinensis HOM05D003972 ORTHO05D004609 2.7e-10 69.7 173 35.3
Pp3c11_16260 Physcomitrium patens HOM05D003972 ORTHO05D004609 3.9e-09 65.9 190 23.7
MCO05G116 Micromonas commoda HOM05D003972 ORTHO05D004609 3.3e-08 62.8 183 24.0
SMO228G0064 Selaginella moellendorffii HOM05D003972 ORTHO05D004609 1.3e-07 60.8 183 25.7
PRCOL_00004246 Prasinoderma coloniale HOM05D003972 ORTHO05D004609 1.1e-06 57.8 192 27.6


User provided reference genes

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