Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc245.12 Carica papaya HOM05D004075 ORTHO05D004538 2.7e-200 701.8 356 100.0
Thecc.01G411500 Theobroma cacao HOM05D004075 ORTHO05D004538 1.2e-115 420.6 371 63.9
QL04p007893 Quercus lobata HOM05D004075 ORTHO05D004538 5.5e-113 411.8 366 63.1
QL04p006698 Quercus lobata HOM05D004075 ORTHO05D004538 7.9e-112 407.9 366 62.6
Sabra09G0045700 Salix brachista HOM05D004075 ORTHO05D004538 2.3e-103 379.8 379 59.6
TWI53G1782 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 2.6e-102 376.3 363 60.6
CSS0027632 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 3.3e-102 375.9 377 59.2
CSS0023689 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 9.7e-102 374.4 377 58.4
Manes.10G143700 Manihot esculenta HOM05D004075 ORTHO05D004538 4.8e-101 372.1 371 58.0
Ciclev10031906m.g Citrus clementina HOM05D004075 ORTHO05D004538 5.3e-100 368.6 379 58.3
Potri.001G267600 Populus trichocarpa HOM05D004075 ORTHO05D004538 4.2e-97 359.0 369 57.7
Dinv43449 Davidia involucrata HOM05D004075 ORTHO05D004538 9.4e-97 357.8 377 55.7
Prupe.2G012400 Prunus persica HOM05D004075 ORTHO05D004538 5.2e-95 352.1 399 52.1
GSVIVG01032083001 Vitis vinifera HOM05D004075 ORTHO05D004538 1.7e-93 347.1 368 56.2
COL.COLO4_23930 Corchorus olitorius HOM05D004075 ORTHO05D004538 4.8e-93 345.5 385 55.6
Atru.chr11.2656 Acer truncatum HOM05D004075 ORTHO05D004538 1.8e-92 343.6 384 56.2
MD07G1009400 Malus domestica HOM05D004075 ORTHO05D004538 2.4e-92 343.2 405 50.1
TWI73G1281 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 1.2e-91 340.9 383 54.6
Phvul.005G020800 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 2.0e-91 340.1 375 51.7
Duzib268G0178 Durio zibethinus HOM05D004075 ORTHO05D004538 2.2e-90 336.7 409 52.3
Glyma.08G155000 Glycine max HOM05D004075 ORTHO05D004538 2.2e-90 336.7 367 54.2
MD02G1313000 Malus domestica HOM05D004075 ORTHO05D004538 2.2e-90 336.7 404 49.8
vmacro13660 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 6.5e-90 335.1 379 53.6
FvH4_7g00980 Fragaria vesca HOM05D004075 ORTHO05D004538 1.1e-89 334.3 414 50.2
Lj9A631T51 Lonicera japonica HOM05D004075 ORTHO05D004538 1.9e-89 333.6 376 52.7
Hma1.2p1_0293F.1_g116200 Hydrangea macrophylla HOM05D004075 ORTHO05D004538 2.5e-89 333.2 374 54.5
Rhsim07G0055100 Rhododendron simsii HOM05D004075 ORTHO05D004538 2.3e-87 326.6 377 54.1
Glyma.15G273700 Glycine max HOM05D004075 ORTHO05D004538 3.0e-87 326.2 380 53.7
VMungo1080G0731 Vigna mungo HOM05D004075 ORTHO05D004538 3.0e-87 326.2 394 48.7
FAN01G1840 Fragaria x ananassa HOM05D004075 ORTHO05D004538 6.8e-87 325.1 413 48.9
TAR636G2153 Trochodendron aralioides HOM05D004075 ORTHO05D004538 8.8e-87 324.7 398 53.5
Actinidia21555 Actinidia chinensis HOM05D004075 ORTHO05D004538 1.5e-86 323.9 380 53.2
Haze_03220 Corylus avellana HOM05D004075 ORTHO05D004538 6.3e-85 318.5 360 52.5
Eucgr.J01269 Eucalyptus grandis HOM05D004075 ORTHO05D004538 1.1e-84 317.8 386 51.3
arahy.Tifrunner.gnm1.ann1.J4WSSI Arachis hypogaea HOM05D004075 ORTHO05D004538 5.4e-84 315.5 407 49.4
RcHm_v2.0_Chr1g0315881 Rosa chinensis HOM05D004075 ORTHO05D004538 7.0e-84 315.1 424 47.2
arahy.Tifrunner.gnm1.ann1.N8UE6G Arachis hypogaea HOM05D004075 ORTHO05D004538 1.6e-83 313.9 385 51.2
CANSAT80G2751 Cannabis sativa HOM05D004075 ORTHO05D004538 1.7e-82 310.5 408 52.0
Dinv09359 Davidia involucrata HOM05D004075 ORTHO05D004538 2.9e-82 309.7 333 56.5
FAN06G1907 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.9e-82 309.7 404 49.3
Gohir.A08G144800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 2.9e-82 309.7 390 53.1
TAR633G2155 Trochodendron aralioides HOM05D004075 ORTHO05D004538 2.9e-82 309.7 390 50.5
Oeu063166.1 Olea europaea HOM05D004075 ORTHO05D004538 3.8e-82 309.3 377 50.1
Oeu063168.1 Olea europaea HOM05D004075 ORTHO05D004538 3.8e-82 309.3 377 50.1
Medtr3g028600 Medicago truncatula HOM05D004075 ORTHO05D004538 5.0e-82 308.9 372 51.3
Lj3g0017759 Lotus japonicus HOM05D004075 ORTHO05D004538 6.5e-82 308.5 375 48.3
Gorai.004G172900 Gossypium raimondii HOM05D004075 ORTHO05D004538 1.1e-81 307.8 391 52.9
Ca_26459_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 1.5e-81 307.4 374 51.1
FAN10G0771 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.5e-81 307.4 403 48.9
Lalb_Chr25g0283121 Lupinus albus HOM05D004075 ORTHO05D004538 2.7e-80 303.1 376 50.3
PGR031G2189 Punica granatum HOM05D004075 ORTHO05D004538 3.6e-80 302.8 374 51.3
Potri.009G061900 Populus trichocarpa HOM05D004075 ORTHO05D004538 4.7e-80 302.4 367 52.0
Gohir.D08G165800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 8.0e-80 301.6 389 51.9
FAN03G2231 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.0e-79 301.2 403 47.1
Psat5g204000 Pisum sativum HOM05D004075 ORTHO05D004538 1.4e-79 300.8 372 50.5
Cc02_g27890 Coffea canephora HOM05D004075 ORTHO05D004538 3.0e-79 299.7 377 48.3
CsaV3_7G031100 Cucumis sativus L. HOM05D004075 ORTHO05D004538 4.4e-78 295.8 362 48.6
ClCG09G004200 Citrullus lanatus HOM05D004075 ORTHO05D004538 1.7e-77 293.9 359 47.9
Actinidia20669 Actinidia chinensis HOM05D004075 ORTHO05D004538 4.9e-77 292.4 366 51.4
THA.LOC104819075 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 4.9e-77 292.4 376 50.3
Manes.07G005500 Manihot esculenta HOM05D004075 ORTHO05D004538 1.1e-76 291.2 318 55.3
Peaxi162Scf00428g00317 Petunia axillaris HOM05D004075 ORTHO05D004538 2.4e-76 290.0 382 47.9
Sed0000159 Sechium edule HOM05D004075 ORTHO05D004538 2.4e-76 290.0 362 48.6
AL5G32670 Arabidopsis lyrata HOM05D004075 ORTHO05D004538 7.0e-76 288.5 394 48.5
AT3G52110 Arabidopsis thaliana HOM05D004075 ORTHO05D004538 2.0e-75 287.0 394 47.2
ECA240G2351 Erigeron canadensis HOM05D004075 ORTHO05D004538 7.7e-75 285.0 376 47.3
Oeu047570.1 Olea europaea HOM05D004075 ORTHO05D004538 1.3e-74 284.3 395 46.3
Aa31LG10G7190 Aethionema arabicum HOM05D004075 ORTHO05D004538 1.7e-74 283.9 387 46.5
Nn2g15469 Nelumbo nucifera HOM05D004075 ORTHO05D004538 2.3e-74 283.5 416 45.9
Sp5g10180 Schrenkiella parvula HOM05D004075 ORTHO05D004538 6.6e-74 282.0 392 48.0
Carub.0005s1844 Capsella rubella HOM05D004075 ORTHO05D004538 2.5e-73 280.0 394 47.7
Nitab4.5_0002477g0020 Nicotiana tabacum HOM05D004075 ORTHO05D004538 5.6e-73 278.9 389 46.5
PGSC0003DMG400006871 Solanum tuberosum HOM05D004075 ORTHO05D004538 9.5e-73 278.1 388 45.6
CARHR161820 Cardamine hirsuta HOM05D004075 ORTHO05D004538 1.6e-72 277.3 388 46.1
BcaNung06093 Brassica carinata HOM05D004075 ORTHO05D004538 6.1e-72 275.4 390 46.7
C08p27380 Brassica napus HOM05D004075 ORTHO05D004538 6.1e-72 275.4 390 46.7
MSTRG.5020 Avicennia marina HOM05D004075 ORTHO05D004538 1.0e-71 274.6 383 46.0
A09p45170 Brassica napus HOM05D004075 ORTHO05D004538 1.8e-71 273.9 390 46.2
BcaB01g00440 Brassica carinata HOM05D004075 ORTHO05D004538 3.0e-71 273.1 389 47.6
BraA09t39980Z Brassica rapa HOM05D004075 ORTHO05D004538 4.0e-71 272.7 390 46.2
Nitab4.5_0000634g0160 Nicotiana tabacum HOM05D004075 ORTHO05D004538 5.2e-71 272.3 389 45.8
PSO384G3961 Papaver somniferum HOM05D004075 ORTHO05D004538 5.2e-71 272.3 418 45.2
PSO339G0483 Papaver somniferum HOM05D004075 ORTHO05D004538 1.2e-70 271.2 411 45.3
vmacro21184 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 1.5e-70 270.8 369 50.7
BolC8t50355H Brassica oleracea HOM05D004075 ORTHO05D004538 2.9e-69 266.5 390 45.6
MELO3C023547.2 Cucumis melo HOM05D004075 ORTHO05D004538 8.3e-69 265.0 352 46.6
Lsat_1_v5_gn_9_117060 Lactuca sativa HOM05D004075 ORTHO05D004538 8.3e-69 265.0 363 49.6
Migut.O00687 Erythranthe guttata HOM05D004075 ORTHO05D004538 1.1e-68 264.6 391 46.8
MSTRG.28073 Avicennia marina HOM05D004075 ORTHO05D004538 1.4e-68 264.2 382 44.0
TPR.G32989 Trifolium pratense HOM05D004075 ORTHO05D004538 1.8e-68 263.8 373 46.4
THA.LOC104826677 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 2.4e-68 263.5 364 46.4
Sc11g0009230 Simmondsia chinensis HOM05D004075 ORTHO05D004538 4.1e-68 262.7 321 50.8
THA.LOC104817133 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 1.2e-67 261.2 324 52.5
SalBow8G1917 Salvia bowleyana HOM05D004075 ORTHO05D004538 2.0e-67 260.4 366 46.4
CAN.G1820.5 Capsicum annuum HOM05D004075 ORTHO05D004538 3.5e-67 259.6 389 44.0
SalBow6G5115 Salvia bowleyana HOM05D004075 ORTHO05D004538 3.0e-66 256.5 366 45.9
HanXRQChr03g0065861 Helianthus annuus HOM05D004075 ORTHO05D004538 5.0e-66 255.8 369 47.2
BcaB02g08587 Brassica carinata HOM05D004075 ORTHO05D004538 2.5e-65 253.4 400 44.5
DCAR_029668 Daucus carota HOM05D004075 ORTHO05D004538 2.5e-65 253.4 393 45.5
SGA_v2.0_scaffold5G02972 Striga asiatica HOM05D004075 ORTHO05D004538 9.5e-65 251.5 390 44.4
HanXRQChr13g0420751 Helianthus annuus HOM05D004075 ORTHO05D004538 2.1e-64 250.4 370 43.5
Solyc01g087080.4 Solanum lycopersicum HOM05D004075 ORTHO05D004538 2.3e-63 246.9 389 42.2
Haze_02822 Corylus avellana HOM05D004075 ORTHO05D004538 6.8e-63 245.4 272 54.4
BraA04t16422Z Brassica rapa HOM05D004075 ORTHO05D004538 1.2e-62 244.6 401 42.1
Rhsim01G0129700 Rhododendron simsii HOM05D004075 ORTHO05D004538 3.4e-62 243.0 267 54.3
A04p07270 Brassica napus HOM05D004075 ORTHO05D004538 4.4e-62 242.7 407 42.3
Thhalv10010636m.g Eutrema salsugineum HOM05D004075 ORTHO05D004538 9.8e-62 241.5 277 50.9
CiPaw.13G003900 Carya illinoinensis HOM05D004075 ORTHO05D004538 2.9e-61 240.0 257 55.3
MBI01_g18891_MAGBIO Magnolia biondii HOM05D004075 ORTHO05D004538 6.4e-61 238.8 401 43.6
C04p40860 Brassica napus HOM05D004075 ORTHO05D004538 2.4e-60 236.9 400 44.0
BolC4t25672H Brassica oleracea HOM05D004075 ORTHO05D004538 2.4e-60 236.9 409 44.3
BcaC02g09281 Brassica carinata HOM05D004075 ORTHO05D004538 3.2e-60 236.5 408 44.4
EL10Ac2g04319 Beta vulgaris HOM05D004075 ORTHO05D004538 2.0e-59 233.8 379 42.7
Ah.10g038860 Amaranthus hybridus HOM05D004075 ORTHO05D004538 4.7e-56 222.6 372 41.9
Sopen01g034160 Solanum pennellii HOM05D004075 ORTHO05D004538 7.8e-51 205.3 317 42.3
Aqoxy2G00118 Aquilegia oxysepala HOM05D004075 ORTHO05D004538 1.1e-49 201.4 400 37.2
Atru.chr2.310 Acer truncatum HOM05D004075 ORTHO05D004538 2.9e-45 186.8 259 50.6
Thecc.05G162200 Theobroma cacao HOM05D004075 ORTHO05D004538 1.2e-40 171.4 248 46.4
MD12G1066800 Malus domestica HOM05D004075 ORTHO05D004538 2.4e-39 167.2 222 48.6
Dinv18084 Davidia involucrata HOM05D004075 ORTHO05D004538 4.0e-39 166.4 249 41.0
Duzib106G1725 Durio zibethinus HOM05D004075 ORTHO05D004538 8.9e-39 165.2 249 44.6
Cfa016858 Carpinus fangiana HOM05D004075 ORTHO05D004538 2.6e-38 163.7 257 42.4
Prupe.7G067300 Prunus persica HOM05D004075 ORTHO05D004538 4.4e-38 162.9 229 46.7
Haze_19908 Corylus avellana HOM05D004075 ORTHO05D004538 1.1e-36 158.3 246 42.7
CiPaw.10G031200 Carya illinoinensis HOM05D004075 ORTHO05D004538 1.9e-36 157.5 260 41.5
Duzib093G1674 Durio zibethinus HOM05D004075 ORTHO05D004538 2.4e-36 157.1 189 50.8
COL.COLO4_28674 Corchorus olitorius HOM05D004075 ORTHO05D004538 3.2e-36 156.8 252 45.6
QL07p021680 Quercus lobata HOM05D004075 ORTHO05D004538 7.1e-36 155.6 252 44.0
Potri.006G054900 Populus trichocarpa HOM05D004075 ORTHO05D004538 6.0e-35 152.5 268 38.8
ATR0605G345 Amborella trichopoda HOM05D004075 ORTHO05D004538 3.9e-34 149.8 220 45.5
unitig_578.g16697 Utricularia gibba HOM05D004075 ORTHO05D004538 3.9e-34 149.8 363 34.4
CDE10G0025 Ceratophyllum demersum HOM05D004075 ORTHO05D004538 6.6e-34 149.1 380 32.9
AUR62023061 Chenopodium quinoa HOM05D004075 ORTHO05D004538 1.5e-33 147.9 334 36.8
Zm00001eb402070 Zea mays HOM05D004075 ORTHO05D004538 7.3e-33 145.6 406 31.8
FAN09G1122 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.3e-32 144.8 235 41.3
Zm00001eb005640 Zea mays HOM05D004075 ORTHO05D004538 1.3e-32 144.8 355 34.1
Manes.08G048400 Manihot esculenta HOM05D004075 ORTHO05D004538 2.1e-32 144.1 246 43.9
Peaxi162Scf00337g00818 Petunia axillaris HOM05D004075 ORTHO05D004538 8.1e-32 142.1 188 48.9
RcHm_v2.0_Chr3g0481111 Rosa chinensis HOM05D004075 ORTHO05D004538 1.4e-31 141.4 237 42.2
FAN02G0713 Fragaria x ananassa HOM05D004075 ORTHO05D004538 3.1e-31 140.2 245 39.2
ECA248G1140 Erigeron canadensis HOM05D004075 ORTHO05D004538 9.0e-31 138.7 253 41.5
Lsat_1_v5_gn_1_107340 Lactuca sativa HOM05D004075 ORTHO05D004538 1.2e-30 138.3 229 39.7
Ca_08481_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 4.5e-30 136.3 256 40.6
Os03g0174200 Oryza sativa ssp. japonica HOM05D004075 ORTHO05D004538 5.8e-30 136.0 416 31.0
Glyma.03G139500 Glycine max HOM05D004075 ORTHO05D004538 7.6e-30 135.6 264 39.8
Phvul.001G136500 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 1.3e-29 134.8 230 40.9
HPP92_020393 Vanilla planifolia HOM05D004075 ORTHO05D004538 2.2e-29 134.0 398 31.4
Lalb_Chr25g0287431 Lupinus albus HOM05D004075 ORTHO05D004538 6.4e-29 132.5 254 40.6
Atru.chr1.1036 Acer truncatum HOM05D004075 ORTHO05D004538 1.9e-28 131.0 201 39.3
VMungo1383G2046 Vigna mungo HOM05D004075 ORTHO05D004538 7.1e-28 129.0 204 44.1
Lj1g0004317 Lotus japonicus HOM05D004075 ORTHO05D004538 2.7e-27 127.1 254 38.2
Rhsim07G0166600 Rhododendron simsii HOM05D004075 ORTHO05D004538 8.7e-26 122.1 201 44.8
CANSAT80G1662 Cannabis sativa HOM05D004075 ORTHO05D004538 1.1e-25 121.7 190 40.5
Psat0s1894g0080 Pisum sativum HOM05D004075 ORTHO05D004538 1.9e-25 120.9 249 38.2
TPR.G3891 Trifolium pratense HOM05D004075 ORTHO05D004538 2.5e-25 120.6 265 37.7
Medtr7g092270 Medicago truncatula HOM05D004075 ORTHO05D004538 7.4e-25 119.0 262 38.9
AUR62009380 Chenopodium quinoa HOM05D004075 ORTHO05D004538 4.0e-23 113.2 147 49.7
Migut.N01589 Erythranthe guttata HOM05D004075 ORTHO05D004538 2.4e-20 104.0 150 46.0
AUR62044097 Chenopodium quinoa HOM05D004075 ORTHO05D004538 3.2e-20 103.6 223 39.0
Rhsim01G0129600 Rhododendron simsii HOM05D004075 ORTHO05D004538 7.9e-19 99.0 121 52.9
Sabra16G0056300 Salix brachista HOM05D004075 ORTHO05D004538 6.7e-18 95.9 89 46.1
BcaB01g00444 Brassica carinata HOM05D004075 ORTHO05D004538 3.3e-17 93.6 176 40.3
SEGI_00378 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 3.1e-15 87.0 137 40.9
SEGI_33290 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 4.5e-14 83.2 171 35.7
SEGI_02901 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 7.6e-14 82.4 171 34.5
SEGI_25355 Sequoiadendron giganteum HOM05D000006 ORTHO05D004538 7.6e-14 82.4 171 34.5
SEGI_06755 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 1.3e-13 81.6 112 40.2
Dinv00534 Davidia involucrata HOM05D004075 ORTHO05D004538 1.9e-12 77.8 47 68.1
CARHR117420 Cardamine hirsuta HOM05D001890 ORTHO05D004538 1.2e-11 75.1 129 41.9
VMungo1383G1333 Vigna mungo HOM05D004075 ORTHO05D004538 6.0e-11 72.8 51 60.8
MD16G1127600 Malus domestica HOM05D002407 ORTHO05D002476 6.7e-10 69.3 100 45.0


User provided reference genes

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