Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc239.7 Carica papaya HOM05D004120 ORTHO05D004951 9.7e-217 756.5 380 100.0
TAR629G2715 Trochodendron aralioides HOM05D004120 ORTHO05D004951 5.8e-153 544.7 380 75.5
Potri.001G143400 Populus trichocarpa HOM05D004120 ORTHO05D004951 4.1e-151 538.5 377 74.5
GSVIVG01013166001 Vitis vinifera HOM05D004120 ORTHO05D004951 7.1e-151 537.7 380 76.1
TWI81G0459 Tripterygium wilfordii HOM05D004120 ORTHO05D004951 1.7e-149 533.1 340 80.9
Gohir.D08G177300 Gossypium hirsutum HOM05D004120 ORTHO05D004951 2.3e-149 532.7 380 74.5
CiPaw.11G092700 Carya illinoinensis HOM05D004120 ORTHO05D004951 3.9e-149 531.9 346 80.1
Nn6g33597 Nelumbo nucifera HOM05D004120 ORTHO05D004951 1.5e-148 530.0 382 75.4
Dinv25212 Davidia involucrata HOM05D004120 ORTHO05D004951 5.6e-148 528.1 384 73.2
Cfa012429 Carpinus fangiana HOM05D004120 ORTHO05D004951 7.3e-148 527.7 384 73.4
Eucgr.D02191 Eucalyptus grandis HOM05D004120 ORTHO05D004951 7.3e-148 527.7 321 84.4
Gohir.A08G156900 Gossypium hirsutum HOM05D004120 ORTHO05D004951 1.6e-147 526.6 326 82.5
Duzib084G1060 Durio zibethinus HOM05D004120 ORTHO05D004951 3.6e-147 525.4 318 82.4
Manes.17G013200 Manihot esculenta HOM05D004120 ORTHO05D004951 3.6e-147 525.4 352 76.7
Nn1g00518 Nelumbo nucifera HOM05D004120 ORTHO05D004951 4.7e-147 525.0 383 73.9
PGSC0003DMG402001159 Solanum tuberosum HOM05D004120 ORTHO05D004951 6.2e-147 524.6 383 72.6
Dinv28953 Davidia involucrata HOM05D004120 ORTHO05D004951 8.1e-147 524.2 384 74.5
Thecc.03G228600 Theobroma cacao HOM05D004120 ORTHO05D004951 8.1e-147 524.2 376 73.9
Sabra01G0111800 Salix brachista HOM05D004120 ORTHO05D004951 1.4e-146 523.5 406 68.5
COL.COLO4_17048 Corchorus olitorius HOM05D004120 ORTHO05D004951 1.8e-146 523.1 319 83.1
CANSAT21G2618 Cannabis sativa HOM05D004120 ORTHO05D004951 2.4e-146 522.7 385 73.0
Sopen08g001030 Solanum pennellii HOM05D004120 ORTHO05D004951 3.1e-146 522.3 384 72.7
Ciclev10031866m.g Citrus clementina HOM05D004120 ORTHO05D004951 5.2e-146 521.5 320 82.8
Gorai.004G185700 Gossypium raimondii HOM05D004120 ORTHO05D004951 6.9e-146 521.2 394 71.6
arahy.Tifrunner.gnm1.ann1.482M5A Arachis hypogaea HOM05D004120 ORTHO05D004951 2.0e-145 519.6 347 76.9
arahy.Tifrunner.gnm1.ann1.G7H05W Arachis hypogaea HOM05D004120 ORTHO05D004951 2.0e-145 519.6 347 76.9
CSS0046330 Camellia sinensis var. sinensis HOM05D004120 ORTHO05D004951 2.0e-145 519.6 380 73.4
Hma1.2p1_0585F.1_g183700 Hydrangea macrophylla HOM05D004120 ORTHO05D004951 2.0e-145 519.6 382 73.0
MD00G1220600 Malus domestica HOM05D004120 ORTHO05D004951 2.0e-145 519.6 384 73.4
QL12p005624 Quercus lobata HOM05D004120 ORTHO05D004951 3.4e-145 518.8 347 78.7
PGR031G2717 Punica granatum HOM05D004120 ORTHO05D004951 5.8e-145 518.1 351 77.8
Sed0006792 Sechium edule HOM05D004120 ORTHO05D004951 5.8e-145 518.1 377 73.5
FAN04G1856 Fragaria x ananassa HOM05D004120 ORTHO05D004951 7.6e-145 517.7 381 73.5
CiPaw.12G063200 Carya illinoinensis HOM05D004120 ORTHO05D004951 1.3e-144 516.9 345 78.6
FvH4_5g21880 Fragaria vesca HOM05D004120 ORTHO05D004951 1.3e-144 516.9 380 73.7
ClCG10G001730 Citrullus lanatus HOM05D004120 ORTHO05D004951 1.7e-144 516.5 379 74.7
FAN18G3415 Fragaria x ananassa HOM05D004120 ORTHO05D004951 2.2e-144 516.2 380 73.7
Phvul.002G007300 Phaseolus vulgaris HOM05D004120 ORTHO05D004951 4.9e-144 515.0 345 77.4
VMungo1215G0016 Vigna mungo HOM05D004120 ORTHO05D004951 4.9e-144 515.0 346 78.0
DCAR_008274 Daucus carota HOM05D004120 ORTHO05D004951 6.4e-144 514.6 379 71.2
Glyma.11G043400 Glycine max HOM05D004120 ORTHO05D004951 8.4e-144 514.2 324 81.2
AL4G31300 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 3.2e-143 512.3 376 71.8
CAN.G1216.15 Capsicum annuum HOM05D004120 ORTHO05D004951 3.2e-143 512.3 380 71.6
A03p19500 Brassica napus HOM05D004120 ORTHO05D004951 4.2e-143 511.9 380 71.1
BcaB02g09465 Brassica carinata HOM05D004120 ORTHO05D004951 7.1e-143 511.1 383 70.5
Prupe.5G038500 Prunus persica HOM05D004120 ORTHO05D004951 1.6e-142 510.0 346 77.5
AT2G35260 Arabidopsis thaliana HOM05D004120 ORTHO05D004951 2.7e-142 509.2 385 69.9
BolC4t22936H Brassica oleracea HOM05D004120 ORTHO05D004951 2.7e-142 509.2 380 69.7
MELO3C013859.2 Cucumis melo HOM05D004120 ORTHO05D004951 2.7e-142 509.2 381 72.4
Sp4g17480 Schrenkiella parvula HOM05D004120 ORTHO05D004951 2.7e-142 509.2 386 69.4
BraA03t11203Z Brassica rapa HOM05D004120 ORTHO05D004951 4.6e-142 508.4 380 70.8
BcaC02g11630 Brassica carinata HOM05D004120 ORTHO05D004951 7.8e-142 507.7 381 69.3
C03p22720 Brassica napus HOM05D004120 ORTHO05D004951 7.8e-142 507.7 378 70.9
C04p12920 Brassica napus HOM05D004120 ORTHO05D004951 7.8e-142 507.7 381 69.3
CsaV3_3G001840 Cucumis sativus L. HOM05D004120 ORTHO05D004951 7.8e-142 507.7 382 72.3
Thhalv10016805m.g Eutrema salsugineum HOM05D004120 ORTHO05D004951 7.8e-142 507.7 384 68.8
BraA05t19989Z Brassica rapa HOM05D004120 ORTHO05D004951 1.3e-141 506.9 380 70.0
CARHR129420 Cardamine hirsuta HOM05D004120 ORTHO05D004951 3.0e-141 505.8 378 70.9
A05p10510 Brassica napus HOM05D004120 ORTHO05D004951 3.9e-141 505.4 380 69.7
ECA240G4620 Erigeron canadensis HOM05D004120 ORTHO05D004951 1.1e-140 503.8 354 74.3
BcaC01g05734 Brassica carinata HOM05D004120 ORTHO05D004951 1.5e-140 503.4 378 70.4
AUR62018721 Chenopodium quinoa HOM05D004120 ORTHO05D004951 1.5e-140 503.4 322 79.5
Aqoxy3G02384 Aquilegia oxysepala HOM05D004120 ORTHO05D004951 2.5e-140 502.7 351 74.6
Cc08_g02620 Coffea canephora HOM05D004120 ORTHO05D004951 2.5e-140 502.7 294 84.4
Lalb_Chr16g0379111 Lupinus albus HOM05D004120 ORTHO05D004951 2.5e-140 502.7 319 80.6
Oeu053047.1 Olea europaea HOM05D004120 ORTHO05D004951 4.3e-140 501.9 377 71.9
BolC3t14671H Brassica oleracea HOM05D004120 ORTHO05D004951 5.6e-140 501.5 378 70.9
Ca_24652_v3 Cicer arietinum L. HOM05D004120 ORTHO05D004951 5.6e-140 501.5 379 70.7
RcHm_v2.0_Chr7g0209431 Rosa chinensis HOM05D004120 ORTHO05D004951 1.3e-139 500.4 381 71.7
Lsat_1_v5_gn_6_79560 Lactuca sativa HOM05D004120 ORTHO05D004951 1.6e-139 500.0 386 69.2
Lj2g0014948 Lotus japonicus HOM05D004120 ORTHO05D004951 1.6e-139 500.0 340 76.2
Medtr5g014430 Medicago truncatula HOM05D004120 ORTHO05D004951 2.8e-139 499.2 383 70.2
Lalb_Chr05g0213941 Lupinus albus HOM05D004120 ORTHO05D004951 3.6e-139 498.8 336 77.1
Carub.0004s1696 Capsella rubella HOM05D004120 ORTHO05D004951 8.1e-139 497.7 383 68.9
ATR0049G040 Amborella trichopoda HOM05D004120 ORTHO05D004951 1.1e-138 497.3 353 72.8
Rhsim11G0014500 Rhododendron simsii HOM05D004120 ORTHO05D004951 1.1e-138 497.3 383 70.2
MSTRG.13757 Avicennia marina HOM05D004120 ORTHO05D004951 2.0e-137 493.0 329 77.2
TPR.G7833 Trifolium pratense HOM05D004120 ORTHO05D004951 2.0e-137 493.0 330 77.3
PSO782G3668 Papaver somniferum HOM05D004120 ORTHO05D004951 4.5e-137 491.9 377 68.4
EL10Ac5g12129 Beta vulgaris HOM05D004120 ORTHO05D004951 1.3e-136 490.3 377 69.8
THA.LOC104807951 Tarenaya hassleriana HOM05D004120 ORTHO05D004951 1.3e-136 490.3 349 72.8
CDE03G0015 Ceratophyllum demersum HOM05D004120 ORTHO05D004951 2.9e-136 489.2 333 74.2
THA.LOC104798329 Tarenaya hassleriana HOM05D004120 ORTHO05D004951 6.4e-136 488.0 395 66.1
PSO063G1634 Papaver somniferum HOM05D004120 ORTHO05D004951 8.4e-136 487.6 378 68.8
Oeu028027.1 Olea europaea HOM05D004120 ORTHO05D004951 1.1e-135 487.3 380 68.9
HanXRQChr03g0084021 Helianthus annuus HOM05D004120 ORTHO05D004951 2.4e-135 486.1 377 67.9
Migut.E00930 Erythranthe guttata HOM05D004120 ORTHO05D004951 9.3e-135 484.2 337 73.9
AL716U10010 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 1.2e-134 483.8 376 69.1
Hund14402 Selenicereus undatus HOM05D004120 ORTHO05D004951 2.1e-134 483.0 349 73.1
Sc01g0007480 Simmondsia chinensis HOM05D004120 ORTHO05D004951 2.1e-134 483.0 316 77.8
unitig_699.g19781 Utricularia gibba HOM05D004120 ORTHO05D004951 1.6e-131 473.4 319 74.9
Thhalv10025287m.g Eutrema salsugineum HOM05D004120 ORTHO05D004951 6.2e-131 471.5 420 61.4
unitig_52.g17209 Utricularia gibba HOM05D004120 ORTHO05D004951 6.2e-131 471.5 315 74.3
Aa31LG6G560 Aethionema arabicum HOM05D004120 ORTHO05D004951 3.1e-130 469.2 415 61.0
vmacro00332 Vaccinium macrocarpon HOM05D004120 ORTHO05D004951 6.9e-130 468.0 390 65.6
Carub.0007s2352 Capsella rubella HOM05D004120 ORTHO05D004951 1.3e-128 463.8 297 75.1
AUR62007285 Chenopodium quinoa HOM05D004120 ORTHO05D004951 2.2e-128 463.0 320 74.7
Os03g0100030 Oryza sativa ssp. japonica HOM05D004120 ORTHO05D004951 3.8e-128 462.2 283 78.1
Zm00001eb426630 Zea mays HOM05D004120 ORTHO05D004951 3.8e-128 462.2 278 79.1
Ah.12g054990 Amaranthus hybridus HOM05D004120 ORTHO05D004951 4.9e-128 461.8 297 77.8
Peaxi162Scf00045g00028 Petunia axillaris HOM05D004120 ORTHO05D004951 6.4e-128 461.5 375 66.9
HPP92_022140 Vanilla planifolia HOM05D004120 ORTHO05D004951 8.4e-128 461.1 303 75.2
HPP92_022143 Vanilla planifolia HOM05D004120 ORTHO05D004951 1.1e-127 460.7 303 75.6
Aa31LG9G15290 Aethionema arabicum HOM05D004120 ORTHO05D004951 1.6e-126 456.8 427 59.5
Psat2g173200 Pisum sativum HOM05D004120 ORTHO05D004951 2.1e-126 456.4 347 70.9
Sp7g16270 Schrenkiella parvula HOM05D004120 ORTHO05D004951 2.1e-126 456.4 277 79.1
C07p49190 Brassica napus HOM05D004120 ORTHO05D004951 2.7e-126 456.1 299 74.6
BcaNung00052 Brassica carinata HOM05D004120 ORTHO05D004951 3.5e-126 455.7 275 80.0
CARHR224560 Cardamine hirsuta HOM05D004120 ORTHO05D004951 4.6e-126 455.3 277 79.1
AL7G36690 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 7.9e-126 454.5 277 78.7
AT4G17840 Arabidopsis thaliana HOM05D004120 ORTHO05D004951 1.0e-125 454.1 277 78.7
A03p50800 Brassica napus HOM05D004120 ORTHO05D004951 1.0e-125 454.1 397 60.7
BraA03t14169Z Brassica rapa HOM05D004120 ORTHO05D004951 1.0e-125 454.1 397 60.7
BcaC09g51598 Brassica carinata HOM05D004120 ORTHO05D004951 1.5e-124 450.3 273 79.5
A01p09890 Brassica napus HOM05D004120 ORTHO05D004951 1.5e-124 450.3 273 79.1
C01p11590 Brassica napus HOM05D004120 ORTHO05D004951 1.5e-124 450.3 273 79.5
BolC1t01127H Brassica oleracea HOM05D004120 ORTHO05D004951 1.5e-124 450.3 273 79.5
BraA01t00933Z Brassica rapa HOM05D004120 ORTHO05D004951 1.5e-124 450.3 273 79.5
SGA_v2.0_scaffold54G19447 Striga asiatica HOM05D004120 ORTHO05D004951 1.5e-124 450.3 387 62.0
ECA246G0968 Erigeron canadensis HOM05D004120 ORTHO05D004951 5.6e-124 448.4 273 80.2
Glyma.01G198500 Glycine max HOM05D004120 ORTHO05D004951 1.1e-122 444.1 284 80.6
Solyc08g005010.4 Solanum lycopersicum HOM05D004120 ORTHO05D004951 4.5e-121 438.7 339 69.9
Atru.chr6.1717 Acer truncatum HOM05D004120 ORTHO05D004951 4.5e-113 412.1 319 69.3
BolC7t45429H Brassica oleracea HOM05D004120 ORTHO05D004951 1.0e-112 411.0 268 75.7
SEGI_24472 Sequoiadendron giganteum HOM05D004120 ORTHO05D004951 6.5e-112 408.3 311 65.9
MD06G1033000 Malus domestica HOM05D004120 ORTHO05D004951 6.1e-110 401.7 264 78.0
Nitab4.5_0000804g0170 Nicotiana tabacum HOM05D004120 ORTHO05D004951 2.5e-103 379.8 209 89.5
Duzib205G1837 Durio zibethinus HOM05D004120 ORTHO05D004951 5.1e-101 372.1 306 68.0
Haze_08240 Corylus avellana HOM05D004120 ORTHO05D004951 7.4e-100 368.2 343 62.1
Actinidia28172 Actinidia chinensis HOM05D004120 ORTHO05D004951 3.0e-93 346.3 190 90.0
Mapoly0008s0099 Marchantia polymorpha HOM05D004120 ORTHO05D004951 3.7e-91 339.3 351 52.1
Pp3c10_10980 Physcomitrium patens HOM05D004120 ORTHO05D004951 3.7e-91 339.3 296 57.8
FAN13G1981 Fragaria x ananassa HOM05D004120 ORTHO05D004951 1.4e-90 337.4 283 67.5
Pp3c14_25270 Physcomitrium patens HOM05D004120 ORTHO05D004951 4.1e-90 335.9 287 58.9
FAN08G2335 Fragaria x ananassa HOM05D004120 ORTHO05D004951 5.3e-90 335.5 283 67.5
unitig_744.g24311 Utricularia gibba HOM05D004120 ORTHO05D004951 1.3e-80 304.3 251 62.5
Nitab4.5_0002539g0020 Nicotiana tabacum HOM05D004120 ORTHO05D004951 1.2e-78 297.7 247 68.4
Actinidia25961 Actinidia chinensis HOM05D004120 ORTHO05D004951 7.7e-73 278.5 266 60.9
SMO356G0344 Selaginella moellendorffii HOM05D004120 ORTHO05D004951 2.3e-72 276.9 255 52.2
CDE06G0385 Ceratophyllum demersum HOM05D004120 ORTHO05D004951 1.2e-65 254.6 205 65.9
arahy.Tifrunner.gnm1.ann1.K2V32T Arachis hypogaea HOM05D004120 ORTHO05D004951 1.9e-63 247.3 142 85.2
arahy.Tifrunner.gnm1.ann1.7CR4HZ Arachis hypogaea HOM05D004120 ORTHO05D004951 5.6e-63 245.7 174 74.1
arahy.Tifrunner.gnm1.ann1.WRTU1C Arachis hypogaea HOM05D004120 ORTHO05D004951 2.8e-62 243.4 142 85.2
arahy.Tifrunner.gnm1.ann1.3C7WBJ Arachis hypogaea HOM05D004120 ORTHO05D004951 3.4e-60 236.5 130 89.2
HanXRQChr05g0153901 Helianthus annuus HOM05D004120 ORTHO05D004951 9.8e-60 235.0 162 75.9
arahy.Tifrunner.gnm1.ann1.B3D4NA Arachis hypogaea HOM05D004120 ORTHO05D004951 4.4e-44 183.0 97 90.7
arahy.Tifrunner.gnm1.ann1.4R7L3N Arachis hypogaea HOM05D004120 ORTHO05D004951 1.7e-43 181.0 98 89.8
arahy.Tifrunner.gnm1.ann1.AE9Z3E Arachis hypogaea HOM05D004120 ORTHO05D004951 2.9e-43 180.3 111 81.1
AagrBONN_evm.TU.Sc2ySwM_117.2801 Anthoceros agrestis HOM05D010715 ORTHO05D004951 4.6e-41 172.9 157 56.1
arahy.Tifrunner.gnm1.ann1.RCE8PR Arachis hypogaea HOM05D004120 ORTHO05D004951 7.6e-36 155.6 131 65.6
arahy.Tifrunner.gnm1.ann1.E125G1 Arachis hypogaea HOM05D004120 ORTHO05D004951 2.3e-32 144.1 72 94.4
arahy.Tifrunner.gnm1.ann1.BQ9W36 Arachis hypogaea HOM05D004120 ORTHO05D004951 1.5e-31 141.4 72 91.7
arahy.Tifrunner.gnm1.ann1.U1DJ88 Arachis hypogaea HOM05D004120 ORTHO05D007788 4.3e-31 139.8 75 90.7
Aa31sc618G30 Aethionema arabicum HOM05D004120 ORTHO05D004951 3.1e-29 133.7 236 39.8
arahy.Tifrunner.gnm1.ann1.L0EJKI Arachis hypogaea HOM05D004120 ORTHO05D004951 1.4e-26 124.8 62 90.3
CBR_g56906 Chara braunii HOM05D004120 ORTHO05D004951 9.3e-26 122.1 114 48.2
AagrBONN_evm.TU.Sc2ySwM_117.3803 Anthoceros agrestis HOM05D004120 ORTHO05D004951 2.1e-25 120.9 149 44.3
arahy.Tifrunner.gnm1.ann1.H82JQN Arachis hypogaea HOM05D004120 ORTHO05D021518 2.1e-25 120.9 131 52.7
EL10Ac1g01819 Beta vulgaris HOM05D004120 ORTHO05D023811 5.3e-21 106.3 69 78.3
CBR_g19263 Chara braunii HOM05D004120 ORTHO05D004951 5.8e-20 102.8 141 41.8
arahy.Tifrunner.gnm1.ann1.JI8VIY Arachis hypogaea HOM05D004120 ORTHO05D021518 1.3e-19 101.7 57 87.7
RcHm_v2.0_Chr6g0284251 Rosa chinensis HOM05D004120 ORTHO05D004951 2.4e-18 97.4 74 63.5
arahy.Tifrunner.gnm1.ann1.NR0HVE Arachis hypogaea HOM05D004120 ORTHO05D021518 7.1e-18 95.9 57 84.2
AUR62039713 Chenopodium quinoa HOM05D004317 ORTHO05D005031 2.7e-17 94.0 55 83.6
CAN.G36.13 Capsicum annuum HOM05D004120 ORTHO05D004951 1.3e-14 85.1 53 73.6
CAN.G399.4 Capsicum annuum HOM05D004120 ORTHO05D004951 2.1e-14 84.3 55 76.4
Aa31sc185G30 Aethionema arabicum HOM05D004120 ORTHO05D004951 1.9e-07 61.2 172 32.0
A01p32880 Brassica napus HOM05D004120 ORTHO05D023811 7.4e-07 59.3 28 96.4
A06p35780 Brassica napus HOM05D004120 ORTHO05D023811 7.4e-07 59.3 28 96.4
BraA01t03409Z Brassica rapa HOM05D004120 ORTHO05D023811 7.4e-07 59.3 28 96.4
BraA06t26504Z Brassica rapa HOM05D004120 ORTHO05D033838 6.2e-06 56.2 29 86.2


User provided reference genes

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