Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc239.6 Carica papaya HOM05D004850 ORTHO05D005971 2.4e-259 898.3 433 100.0
Thecc.03G228700 Theobroma cacao HOM05D004850 ORTHO05D005971 2.6e-226 788.5 433 87.3
Haze_08241 Corylus avellana HOM05D004850 ORTHO05D005971 8.4e-225 783.5 432 86.8
CiPaw.11G092600 Carya illinoinensis HOM05D004850 ORTHO05D005971 7.1e-224 780.4 432 86.1
Cfa012428 Carpinus fangiana HOM05D004850 ORTHO05D005971 9.3e-224 780.0 447 84.3
Prupe.5G038300 Prunus persica HOM05D004850 ORTHO05D005971 9.3e-224 780.0 439 85.4
Peaxi162Scf00460g00615 Petunia axillaris HOM05D004850 ORTHO05D005971 2.3e-222 775.4 439 84.5
Manes.17G013000 Manihot esculenta HOM05D004850 ORTHO05D005971 3.0e-222 775.0 433 86.4
TWI15G0149 Tripterygium wilfordii HOM05D004850 ORTHO05D005971 3.0e-222 775.0 433 85.0
Duzib084G0351 Durio zibethinus HOM05D004850 ORTHO05D005971 5.1e-222 774.2 433 86.4
Hma1.2p1_0991F.1_g245100 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 1.9e-221 772.3 439 83.8
Gohir.D03G170933 Gossypium hirsutum HOM05D004850 ORTHO05D005971 4.3e-221 771.2 433 85.9
COL.COLO4_17049 Corchorus olitorius HOM05D004850 ORTHO05D005971 5.7e-221 770.8 433 85.5
Gohir.A03G001400 Gossypium hirsutum HOM05D004850 ORTHO05D005971 7.4e-221 770.4 433 85.7
Actinidia03377 Actinidia chinensis HOM05D004850 ORTHO05D005971 2.2e-220 768.8 439 82.9
Duzib205G2010 Durio zibethinus HOM05D004850 ORTHO05D005971 3.7e-220 768.1 433 85.0
MD16G1275900 Malus domestica HOM05D004850 ORTHO05D005971 3.7e-220 768.1 439 84.3
CANSAT21G2632 Cannabis sativa HOM05D004850 ORTHO05D005971 4.8e-220 767.7 439 83.1
Potri.001G143200 Populus trichocarpa HOM05D004850 ORTHO05D005971 8.2e-220 766.9 433 85.0
Ciclev10031569m.g Citrus clementina HOM05D004850 ORTHO05D005971 1.1e-219 766.5 435 83.7
arahy.Tifrunner.gnm1.ann1.IM2DA2 Arachis hypogaea HOM05D004850 ORTHO05D005971 2.4e-219 765.4 432 84.5
arahy.Tifrunner.gnm1.ann1.Y05B39 Arachis hypogaea HOM05D004850 ORTHO05D005971 2.4e-219 765.4 432 84.5
MD06G1033100 Malus domestica HOM05D004850 ORTHO05D005971 2.4e-219 765.4 437 83.1
Medtr5g014410 Medicago truncatula HOM05D004850 ORTHO05D005971 9.0e-219 763.5 433 83.4
Lj2g0005935 Lotus japonicus HOM05D004850 ORTHO05D005971 3.4e-218 761.5 439 82.0
Lalb_Chr16g0379121 Lupinus albus HOM05D004850 ORTHO05D005971 4.5e-218 761.1 433 82.7
Nitab4.5_0001963g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 1.0e-217 760.0 432 84.3
Glyma.11G043300 Glycine max HOM05D004850 ORTHO05D005971 2.2e-217 758.8 439 82.2
Dinv25211 Davidia involucrata HOM05D004850 ORTHO05D005971 2.9e-217 758.4 434 82.3
Lalb_Chr05g0213951 Lupinus albus HOM05D004850 ORTHO05D005971 5.0e-217 757.7 439 81.5
Ca_24651_v3 Cicer arietinum L. HOM05D004850 ORTHO05D005971 6.5e-217 757.3 439 82.0
PGR031G0111 Punica granatum HOM05D004850 ORTHO05D005971 1.1e-216 756.5 439 81.8
CAN.G1381.2 Capsicum annuum HOM05D004850 ORTHO05D005971 1.4e-216 756.1 439 82.2
Solyc08g076990.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 1.4e-216 756.1 439 81.8
CSS0027944 Camellia sinensis var. sinensis HOM05D004850 ORTHO05D005971 1.9e-216 755.7 439 81.5
Thhalv10025214m.g Eutrema salsugineum HOM05D004850 ORTHO05D005971 2.5e-216 755.4 436 81.9
Sp7g16280 Schrenkiella parvula HOM05D004850 ORTHO05D005971 2.5e-216 755.4 436 82.1
THA.LOC104827763 Tarenaya hassleriana HOM05D004850 ORTHO05D005971 2.5e-216 755.4 434 81.8
Potri.003G091100 Populus trichocarpa HOM05D004850 ORTHO05D005971 4.2e-216 754.6 431 84.2
Sopen08g025570 Solanum pennellii HOM05D004850 ORTHO05D005971 5.5e-216 754.2 439 81.3
VMungo1215G1005 Vigna mungo HOM05D004850 ORTHO05D005971 7.2e-216 753.8 433 82.2
C07p49180 Brassica napus HOM05D004850 ORTHO05D005971 2.7e-215 751.9 434 81.6
BolC7t45428H Brassica oleracea HOM05D004850 ORTHO05D005971 2.7e-215 751.9 434 81.6
A03p50790 Brassica napus HOM05D004850 ORTHO05D005971 3.6e-215 751.5 434 81.6
Phvul.002G007200 Phaseolus vulgaris HOM05D004850 ORTHO05D005971 7.9e-215 750.4 433 82.0
BraA03t14168Z Brassica rapa HOM05D004850 ORTHO05D005971 1.0e-214 750.0 434 81.3
ECA233G2661 Erigeron canadensis HOM05D004850 ORTHO05D005971 2.3e-214 748.8 433 82.2
FAN08G3086 Fragaria x ananassa HOM05D004850 ORTHO05D005971 2.3e-214 748.8 433 82.2
Nn6g33598 Nelumbo nucifera HOM05D004850 ORTHO05D005971 2.3e-214 748.8 439 81.1
EL10Ac5g12130 Beta vulgaris HOM05D004850 ORTHO05D005971 5.1e-214 747.7 427 81.3
A01p09880 Brassica napus HOM05D004850 ORTHO05D005971 8.8e-214 746.9 430 82.1
FAN13G0589 Fragaria x ananassa HOM05D004850 ORTHO05D005971 8.8e-214 746.9 433 81.8
Lsat_1_v5_gn_6_64460 Lactuca sativa HOM05D004850 ORTHO05D005971 8.8e-214 746.9 434 80.9
MSTRG.1982 Avicennia marina HOM05D004850 ORTHO05D005971 1.1e-213 746.5 434 82.3
BcaC09g51599 Brassica carinata HOM05D004850 ORTHO05D005971 1.1e-213 746.5 430 81.4
AUR62018722 Chenopodium quinoa HOM05D004850 ORTHO05D005971 1.1e-213 746.5 433 80.8
HanXRQChr06g0178401 Helianthus annuus HOM05D004850 ORTHO05D005971 1.5e-213 746.1 433 81.3
CARHR224550 Cardamine hirsuta HOM05D004850 ORTHO05D005971 2.0e-213 745.7 436 80.3
FvH4_5g21890 Fragaria vesca HOM05D004850 ORTHO05D005971 2.5e-213 745.3 433 82.0
Lj2A240G35 Lonicera japonica HOM05D004850 ORTHO05D005971 2.5e-213 745.3 494 74.1
Eucgr.D02190 Eucalyptus grandis HOM05D004850 ORTHO05D005971 3.3e-213 745.0 439 81.3
AT4G17830 Arabidopsis thaliana HOM05D004850 ORTHO05D005971 4.3e-213 744.6 436 80.3
Migut.E00931 Erythranthe guttata HOM05D004850 ORTHO05D005971 4.3e-213 744.6 434 80.9
RcHm_v2.0_Chr7g0209441 Rosa chinensis HOM05D004850 ORTHO05D005971 4.3e-213 744.6 433 81.5
Carub.0007s2353 Capsella rubella HOM05D004850 ORTHO05D005971 5.7e-213 744.2 436 80.5
AL7G36700 Arabidopsis lyrata HOM05D004850 ORTHO05D005971 7.4e-213 743.8 433 80.6
FAN18G1246 Fragaria x ananassa HOM05D004850 ORTHO05D005971 7.4e-213 743.8 433 81.8
Sabra01G0111700 Salix brachista HOM05D004850 ORTHO05D005971 1.7e-212 742.7 471 77.3
TAR629G1238 Trochodendron aralioides HOM05D004850 ORTHO05D005971 1.7e-212 742.7 435 82.3
Ah.12g054980 Amaranthus hybridus HOM05D004850 ORTHO05D005971 2.2e-212 742.3 433 79.9
Psat2g173240 Pisum sativum HOM05D004850 ORTHO05D005971 2.2e-212 742.3 439 80.2
Aqoxy3G02383 Aquilegia oxysepala HOM05D004850 ORTHO05D005971 4.8e-212 741.1 439 79.5
Aa31LG6G570 Aethionema arabicum HOM05D004850 ORTHO05D005971 6.3e-212 740.7 436 80.7
BraA01t00932Z Brassica rapa HOM05D004850 ORTHO05D005971 9.1e-211 736.9 445 79.3
Sc01g0007470 Simmondsia chinensis HOM05D004850 ORTHO05D005971 2.0e-210 735.7 444 78.8
unitig_21.g20382 Utricularia gibba HOM05D004850 ORTHO05D005971 2.9e-209 731.9 428 82.2
PSO063G6489 Papaver somniferum HOM05D004850 ORTHO05D005971 4.2e-208 728.0 429 80.0
Oeu006991.2 Olea europaea HOM05D004850 ORTHO05D005971 3.3e-205 718.4 505 71.1
CDE11G0367 Ceratophyllum demersum HOM05D004850 ORTHO05D005971 4.4e-205 718.0 435 78.6
ATR0049G003 Amborella trichopoda HOM05D004850 ORTHO05D005971 1.7e-204 716.1 434 78.8
Gorai.003G181400 Gossypium raimondii HOM05D004850 ORTHO05D005971 2.8e-204 715.3 404 85.9
Psat2g173320 Pisum sativum HOM05D004850 ORTHO05D005971 4.1e-203 711.4 439 76.5
SGA_v2.0_scaffold20G09279 Striga asiatica HOM05D004850 ORTHO05D005971 5.3e-203 711.1 523 68.5
HPP92_001721 Vanilla planifolia HOM05D004850 ORTHO05D005971 1.2e-202 709.9 434 77.2
Rhsim11G0014400 Rhododendron simsii HOM05D004850 ORTHO05D005971 5.0e-201 704.5 420 79.8
vmacro00333 Vaccinium macrocarpon HOM05D004850 ORTHO05D005971 1.1e-200 703.4 409 82.2
HanXRQChr10g0285061 Helianthus annuus HOM05D004850 ORTHO05D005971 5.5e-200 701.0 433 76.2
Sabra03G0060800 Salix brachista HOM05D004850 ORTHO05D005971 3.7e-196 688.3 400 82.5
Dinv28952 Davidia involucrata HOM05D004850 ORTHO05D005971 1.1e-195 686.8 388 84.8
DCAR_031774 Daucus carota HOM05D004850 ORTHO05D005971 2.9e-193 678.7 407 79.1
Sopen08g025550 Solanum pennellii HOM05D004850 ORTHO05D005971 3.8e-193 678.3 432 74.3
PGSC0003DMG400017513 Solanum tuberosum HOM05D004850 ORTHO05D005971 5.0e-193 677.9 426 73.9
Solyc08g076970.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 1.1e-192 676.8 432 74.1
Solyc08g076980.4 Solanum lycopersicum HOM05D004850 ORTHO05D005971 1.0e-190 670.2 427 74.5
Sopen08g025560 Solanum pennellii HOM05D004850 ORTHO05D005971 2.6e-189 665.6 433 73.2
SMO353G0234 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 3.1e-187 658.7 427 75.2
Os02g0690800 Oryza sativa ssp. japonica HOM05D004850 ORTHO05D005971 4.1e-187 658.3 436 72.7
Zm00001eb251190 Zea mays HOM05D004850 ORTHO05D005971 7.7e-186 654.1 442 70.6
MELO3C003400.2 Cucumis melo HOM05D004850 ORTHO05D005971 2.3e-182 642.5 434 70.5
Nn1g00519 Nelumbo nucifera HOM05D004850 ORTHO05D005971 2.3e-182 642.5 429 73.9
AagrBONN_evm.TU.Sc2ySwM_117.1258 Anthoceros agrestis HOM05D004850 ORTHO05D005971 3.0e-182 642.1 426 73.0
Atru.chr6.1718 Acer truncatum HOM05D004850 ORTHO05D005971 4.8e-180 634.8 333 89.5
Sed0023890 Sechium edule HOM05D004850 ORTHO05D005971 5.4e-179 631.3 439 67.9
Pp3c6_20970 Physcomitrium patens HOM05D004850 ORTHO05D005971 5.0e-177 624.8 427 70.0
Sed0011615 Sechium edule HOM05D004850 ORTHO05D005971 1.6e-175 619.8 439 66.3
ClCG09G012030 Citrullus lanatus HOM05D004850 ORTHO05D005971 1.3e-172 610.1 432 66.4
Mapoly0013s0175 Marchantia polymorpha HOM05D004850 ORTHO05D005971 4.9e-172 608.2 427 69.1
Cc11_g03830 Coffea canephora HOM05D004850 ORTHO05D005971 8.3e-172 607.4 330 87.6
GSVIVG01013167001 Vitis vinifera HOM05D004850 ORTHO05D005971 8.3e-172 607.4 341 84.8
AUR62007282 Chenopodium quinoa HOM05D004850 ORTHO05D005971 3.5e-170 602.1 384 75.8
Cc00_g30170 Coffea canephora HOM05D004850 ORTHO05D005971 7.8e-170 600.9 346 82.7
ClCG09G012040 Citrullus lanatus HOM05D004850 ORTHO05D005971 6.6e-169 597.8 433 64.9
BolC1t01126H Brassica oleracea HOM05D004850 ORTHO05D005971 1.4e-166 590.1 355 79.2
Actinidia28173 Actinidia chinensis HOM05D004850 ORTHO05D005971 4.0e-166 588.6 434 68.4
CBR_g51240 Chara braunii HOM05D004850 ORTHO05D005971 3.0e-161 572.4 435 63.4
MELO3C003399.2 Cucumis melo HOM05D004850 ORTHO05D005971 7.0e-155 551.2 443 60.5
CsaV3_3G049280 Cucumis sativus L. HOM05D004850 ORTHO05D005971 3.5e-154 548.9 443 59.8
QL12p005631 Quercus lobata HOM05D004850 ORTHO05D005971 1.5e-152 543.5 288 88.9
Cre02.g105500 Chlamydomonas reinhardtii HOM05D004850 ORTHO05D005971 1.4e-150 537.0 425 60.0
MELO3C003398.2 Cucumis melo HOM05D004850 ORTHO05D005971 1.7e-148 530.0 438 59.6
C01p11580 Brassica napus HOM05D004850 ORTHO05D005971 1.1e-139 500.7 381 66.1
CsaV3_3G049270 Cucumis sativus L. HOM05D004850 ORTHO05D005971 2.1e-138 496.5 338 69.8
ClCG09G012020 Citrullus lanatus HOM05D004850 ORTHO05D005971 1.0e-137 494.2 354 66.7
SMO116G0259 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 1.3e-137 493.8 430 57.2
MCO07G613 Micromonas commoda HOM05D004850 ORTHO05D005971 1.8e-118 430.3 431 49.4
MD06G1033200 Malus domestica HOM05D004850 ORTHO05D005971 1.3e-113 414.1 346 61.8
Nitab4.5_0008181g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 4.0e-110 402.5 223 86.1
Glyma.01G198600 Glycine max HOM05D004850 ORTHO05D005971 1.3e-108 397.5 239 80.3
arahy.Tifrunner.gnm1.ann1.XXZT2J Arachis hypogaea HOM05D004850 ORTHO05D005971 4.1e-86 322.8 228 68.4
SHI07365 Sapria himalayana HOM05D004850 ORTHO05D005971 4.8e-79 299.3 191 74.9
Sc02g0006900 Simmondsia chinensis HOM05D004850 ORTHO05D005971 5.7e-72 275.8 151 86.8
HPP92_001566 Vanilla planifolia HOM05D004850 ORTHO05D005971 3.8e-68 263.1 201 67.2
Sc03g0003930 Simmondsia chinensis HOM05D004850 ORTHO05D005971 5.5e-67 259.2 176 71.6
Cc08_g02610 Coffea canephora HOM05D004850 ORTHO05D005971 7.5e-64 248.8 146 80.1
FAN04G0574 Fragaria x ananassa HOM05D004850 ORTHO05D005971 1.2e-58 231.5 134 81.3
Actinidia25960 Actinidia chinensis HOM05D004850 ORTHO05D005971 2.1e-58 230.7 235 55.3
SEGI_04366 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 3.0e-44 183.7 101 80.2
Sc22g0003360 Simmondsia chinensis HOM05D004850 ORTHO05D005971 2.5e-43 180.6 112 76.8
BcaNung00053 Brassica carinata HOM05D004850 ORTHO05D005971 9.5e-43 178.7 138 65.2
Sc22g0003350 Simmondsia chinensis HOM05D004850 ORTHO05D005971 2.7e-37 160.6 88 84.1
arahy.Tifrunner.gnm1.ann1.RD5L31 Arachis hypogaea HOM05D004850 ORTHO05D005971 7.8e-37 159.1 93 81.7
MD02G1199500 Malus domestica HOM05D004850 ORTHO05D048674 2.8e-34 150.6 205 41.5
arahy.Tifrunner.gnm1.ann1.MBF31G Arachis hypogaea HOM05D004850 ORTHO05D005971 2.3e-33 147.5 159 50.9
SEGI_19032 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 1.7e-31 141.4 82 82.9
Hma1.2p1_0090F.1_g045780 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 6.2e-26 122.9 79 70.9
SMO116G0465 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 4.4e-24 116.7 257 33.9
MD15G1380000 Malus domestica HOM05D004850 ORTHO05D048674 2.1e-21 107.8 58 77.6
Cc06_g05830 Coffea canephora HOM05D004850 ORTHO05D005971 2.3e-20 104.4 63 79.4
SHI07376 Sapria himalayana HOM05D004850 ORTHO05D005971 1.1e-19 102.1 75 58.7
SHI07370 Sapria himalayana HOM05D004850 ORTHO05D005971 4.0e-17 93.6 67 65.7
arahy.Tifrunner.gnm1.ann1.00HL0A Arachis hypogaea HOM05D004850 ORTHO05D004353 6.4e-15 86.3 116 44.8
Lsat_1_v5_gn_9_53361 Lactuca sativa HOM05D003461 ORTHO05D004386 1.9e-14 84.7 83 54.2
Lsat_1_v5_gn_4_90040 Lactuca sativa HOM05D003461 ORTHO05D004386 1.6e-13 81.6 38 89.5
Lsat_1_v5_gn_8_141060 Lactuca sativa HOM05D003461 ORTHO05D004386 1.5e-11 75.1 98 46.9
AUR62007284 Chenopodium quinoa HOM05D000077 ORTHO05D014281 2.4e-09 67.8 47 66.0
SMO353G0042 Selaginella moellendorffii HOM05D019014 ORTHO05D379427 6.4e-07 59.7 69 50.7
SHI07377 Sapria himalayana HOM05D004850 ORTHO05D005971 9.3e-06 55.8 35 68.6


User provided reference genes

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