Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc2382.1 Carica papaya HOM05D007041 ORTHO05D008036 4.8e-41 170.6 80 100.0
Thecc.01G346300 Theobroma cacao HOM05D007041 ORTHO05D008036 3.8e-14 81.3 55 70.9
Prupe.2G184300 Prunus persica HOM05D007041 ORTHO05D008036 1.5e-13 79.3 52 73.1
COL.COLO4_06320 Corchorus olitorius HOM05D007041 ORTHO05D008036 3.2e-13 78.2 72 62.5
Gohir.D08G147100 Gossypium hirsutum HOM05D007041 ORTHO05D008036 1.2e-12 76.3 62 62.9
Gorai.004G152600 Gossypium raimondii HOM05D007041 ORTHO05D008036 1.2e-12 76.3 62 62.9
CiPaw.02G039100 Carya illinoinensis HOM05D007041 ORTHO05D008036 2.1e-12 75.5 54 63.0
RcHm_v2.0_Chr1g0358991 Rosa chinensis HOM05D007041 ORTHO05D008036 4.7e-12 74.3 59 59.3
FAN03G1744 Fragaria x ananassa HOM05D007041 ORTHO05D008036 8.0e-12 73.6 59 59.3
MD07G1146000 Malus domestica HOM05D007041 ORTHO05D008036 1.0e-11 73.2 48 75.0
EL10Ac1g00306 Beta vulgaris HOM05D007041 ORTHO05D008036 1.4e-11 72.8 35 88.6
CiPaw.01G073300 Carya illinoinensis HOM05D007041 ORTHO05D008036 1.8e-11 72.4 59 61.0
CSS0049473 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 4.0e-11 71.2 56 57.1
FvH4_7g16050 Fragaria vesca HOM05D007041 ORTHO05D008036 4.0e-11 71.2 59 55.9
FAN10G1361 Fragaria x ananassa HOM05D007041 ORTHO05D008036 4.0e-11 71.2 59 55.9
Potri.014G095600 Populus trichocarpa HOM05D007041 ORTHO05D008036 4.0e-11 71.2 74 54.1
Lalb_Chr17g0342361 Lupinus albus HOM05D007041 ORTHO05D008036 5.2e-11 70.9 57 50.9
Manes.05G025400 Manihot esculenta HOM05D007041 ORTHO05D008036 6.7e-11 70.5 55 61.8
Gohir.A07G139300 Gossypium hirsutum HOM05D007041 ORTHO05D008036 8.8e-11 70.1 50 66.0
Atru.chr5.628 Acer truncatum HOM05D007041 ORTHO05D008036 1.1e-10 69.7 49 63.3
Gohir.D07G144400 Gossypium hirsutum HOM05D007041 ORTHO05D008036 1.1e-10 69.7 47 70.2
Gorai.001G156400 Gossypium raimondii HOM05D007041 ORTHO05D008036 1.1e-10 69.7 47 70.2
Nitab4.5_0007594g0010 Nicotiana tabacum HOM05D007041 ORTHO05D008036 1.1e-10 69.7 49 65.3
Sabra14G0070100 Salix brachista HOM05D007041 ORTHO05D008036 1.1e-10 69.7 55 63.6
TPR.G7661 Trifolium pratense HOM05D007041 ORTHO05D008036 1.1e-10 69.7 44 68.2
FAN10G2988 Fragaria x ananassa HOM05D007041 ORTHO05D008036 2.0e-10 68.9 59 54.2
arahy.Tifrunner.gnm1.ann1.JU2T19 Arachis hypogaea HOM05D007041 ORTHO05D008036 2.6e-10 68.6 45 62.2
arahy.Tifrunner.gnm1.ann1.LKBY4F Arachis hypogaea HOM05D007041 ORTHO05D008036 2.6e-10 68.6 45 62.2
CSS0019600 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 2.6e-10 68.6 55 56.4
CANSAT56G1227 Cannabis sativa HOM05D007041 ORTHO05D008036 2.6e-10 68.6 41 78.0
FAN06G2039 Fragaria x ananassa HOM05D007041 ORTHO05D008036 2.6e-10 68.6 59 54.2
FAN06G3979 Fragaria x ananassa HOM05D007041 ORTHO05D008036 2.6e-10 68.6 59 54.2
AT3G61660 Arabidopsis thaliana HOM05D007041 ORTHO05D008036 4.4e-10 67.8 48 62.5
Glyma.07G057800 Glycine max HOM05D007041 ORTHO05D008036 4.4e-10 67.8 53 58.5
Sp5g01745 Schrenkiella parvula HOM05D007041 ORTHO05D008036 5.7e-10 67.4 67 50.7
AL5G44060 Arabidopsis lyrata HOM05D007041 ORTHO05D008036 7.5e-10 67.0 48 62.5
BraA09t40795Z Brassica rapa HOM05D007041 ORTHO05D008036 7.5e-10 67.0 48 62.5
Carub.0005s2835 Capsella rubella HOM05D007041 ORTHO05D008036 7.5e-10 67.0 48 62.5
Rhsim07G0006100 Rhododendron simsii HOM05D000337 ORTHO05D000297 7.5e-10 67.0 36 77.8
C08p36510 Brassica napus HOM05D007041 ORTHO05D008036 9.7e-10 66.6 48 62.5
BolC8t51234H Brassica oleracea HOM05D007041 ORTHO05D008036 9.7e-10 66.6 48 62.5
Medtr8g027915 Medicago truncatula HOM05D007041 ORTHO05D008036 9.7e-10 66.6 52 61.5
A09p53730 Brassica napus HOM05D007041 ORTHO05D008036 1.3e-09 66.2 36 72.2
Thhalv10006386m.g Eutrema salsugineum HOM05D007041 ORTHO05D008036 1.3e-09 66.2 48 62.5
Nitab4.5_0000305g0050 Nicotiana tabacum HOM05D007041 ORTHO05D008036 1.3e-09 66.2 54 59.3
Rhsim01G0170500 Rhododendron simsii HOM05D007041 ORTHO05D008036 1.3e-09 66.2 59 50.8
CiPaw.12G084900 Carya illinoinensis HOM05D007041 ORTHO05D008036 1.7e-09 65.9 57 57.9
Sabra02G0143600 Salix brachista HOM05D007041 ORTHO05D008036 1.7e-09 65.9 52 67.3
vmacro22517 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 2.2e-09 65.5 51 52.9
VMungo0331G1585 Vigna mungo HOM05D007041 ORTHO05D008036 2.2e-09 65.5 39 71.8
Actinidia28494 Actinidia chinensis HOM05D000017 ORTHO05D008036 2.8e-09 65.1 50 60.0
CARHR171970 Cardamine hirsuta HOM05D007041 ORTHO05D008036 2.8e-09 65.1 48 62.5
Medtr8g027905 Medicago truncatula HOM05D001941 ORTHO05D008036 3.7e-09 64.7 51 60.8
Sc01g0010130 Simmondsia chinensis HOM05D007041 ORTHO05D008036 3.7e-09 64.7 49 57.1
vmacro22516 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 3.7e-09 64.7 85 37.6
Glyma.16G026800 Glycine max HOM05D007041 ORTHO05D008036 6.3e-09 63.9 53 58.5
Nn3g19073 Nelumbo nucifera HOM05D007041 ORTHO05D008036 1.1e-08 63.2 49 65.3
Oeu007854.1 Olea europaea HOM05D007041 ORTHO05D008036 1.1e-08 63.2 66 45.5
Rhsim01G0170200 Rhododendron simsii HOM05D007041 ORTHO05D008036 1.1e-08 63.2 68 50.0
vmacro22515 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 1.1e-08 63.2 70 45.7
Peaxi162Scf00843g00001 Petunia axillaris HOM05D007041 ORTHO05D008036 1.8e-08 62.4 81 43.2
CsaV3_3G008250 Cucumis sativus L. HOM05D007041 ORTHO05D008036 2.4e-08 62.0 70 50.0
Glyma.19G254100 Glycine max HOM05D007041 ORTHO05D008036 2.4e-08 62.0 72 45.8
Phvul.010G111500 Phaseolus vulgaris HOM05D007041 ORTHO05D008036 2.4e-08 62.0 39 66.7
Medtr8g027305 Medicago truncatula HOM05D007041 ORTHO05D008036 3.1e-08 61.6 51 58.8
QL02p031389 Quercus lobata HOM05D007041 ORTHO05D008036 4.1e-08 61.2 52 53.8
Lj3g0003817 Lotus japonicus HOM05D007041 ORTHO05D008036 5.3e-08 60.8 48 62.5
TAR629G2489 Trochodendron aralioides HOM05D007041 ORTHO05D008036 7.0e-08 60.5 51 56.9
AUR62023489 Chenopodium quinoa HOM05D007041 ORTHO05D008036 9.1e-08 60.1 36 77.8
Potri.003G137600 Populus trichocarpa HOM05D007041 ORTHO05D008036 9.1e-08 60.1 49 53.1
Nn1g01816 Nelumbo nucifera HOM05D007041 ORTHO05D008036 1.2e-07 59.7 73 46.6
Manes.02G012400 Manihot esculenta HOM05D007041 ORTHO05D008036 1.6e-07 59.3 53 54.7
CSS0039531 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 2.0e-07 58.9 65 46.2
MELO3C006045.2 Cucumis melo HOM05D007041 ORTHO05D008036 2.0e-07 58.9 44 65.9
Potri.002G168300 Populus trichocarpa HOM05D007041 ORTHO05D008036 2.0e-07 58.9 53 56.6
Haze_08658 Corylus avellana HOM05D007041 ORTHO05D008036 2.7e-07 58.5 39 61.5
Manes.02G012350 Manihot esculenta HOM05D007041 ORTHO05D008036 2.7e-07 58.5 53 54.7
SalBow3G2736 Salvia bowleyana HOM05D007041 ORTHO05D008036 2.7e-07 58.5 34 67.6
Oeu007855.1 Olea europaea HOM05D007041 ORTHO05D008036 3.5e-07 58.2 53 41.5
Medtr7g117120 Medicago truncatula HOM05D007041 ORTHO05D008036 4.5e-07 57.8 45 57.8
Migut.B01841 Erythranthe guttata HOM05D007041 ORTHO05D008036 5.9e-07 57.4 34 67.6
Manes.01G248300 Manihot esculenta HOM05D007041 ORTHO05D008036 5.9e-07 57.4 35 77.1
ECA236G3839 Erigeron canadensis HOM05D007041 ORTHO05D008036 1.3e-06 56.2 44 50.0
Thecc.03G293400 Theobroma cacao HOM05D007041 ORTHO05D008036 1.3e-06 56.2 43 60.5
Oeu009948.1 Olea europaea HOM05D007041 ORTHO05D008036 1.7e-06 55.8 42 54.8
RcHm_v2.0_Chr7g0195411 Rosa chinensis HOM05D017100 ORTHO05D008036 1.7e-06 55.8 48 54.2
Ca_09497_v3 Cicer arietinum L. HOM05D007041 ORTHO05D008036 2.2e-06 55.5 39 59.0
Sed0010994 Sechium edule HOM05D007041 ORTHO05D008036 2.2e-06 55.5 28 78.6
Nn2g15118 Nelumbo nucifera HOM05D007041 ORTHO05D008036 2.9e-06 55.1 80 42.5
Prupe.5G115500 Prunus persica HOM05D007041 ORTHO05D008036 2.9e-06 55.1 40 57.5
Lsat_1_v5_gn_7_2180 Lactuca sativa HOM05D007041 ORTHO05D008036 3.8e-06 54.7 69 40.6
Potri.001G094000 Populus trichocarpa HOM05D007041 ORTHO05D008036 3.8e-06 54.7 35 62.9
Sopen08g030330 Solanum pennellii HOM05D002045 ORTHO05D002014 3.8e-06 54.7 28 82.1
PGSC0003DMG400012302 Solanum tuberosum HOM05D007041 ORTHO05D008036 3.8e-06 54.7 28 82.1
Gohir.A12G234950 Gossypium hirsutum HOM05D007041 ORTHO05D008036 5.0e-06 54.3 45 55.6
Zm00001eb310140 Zea mays HOM05D007041 ORTHO05D008036 5.0e-06 54.3 44 54.5
Zm00001eb441140 Zea mays HOM05D007041 ORTHO05D008036 5.0e-06 54.3 44 54.5
SGA_v2.0_scaffold11G05722 Striga asiatica HOM05D007041 ORTHO05D008036 6.5e-06 53.9 58 48.3
TAR636G2915 Trochodendron aralioides HOM05D007041 ORTHO05D008036 6.5e-06 53.9 26 80.8


User provided reference genes

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