Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc235.19 Carica papaya HOM05D008053 ORTHO05D009808 1.9e-286 988.8 611 100.0
Carub.0003s2958 Capsella rubella HOM05D008053 ORTHO05D009808 6.3e-16 90.1 92 48.9
Psat0s3483g0080 Pisum sativum HOM05D008053 ORTHO05D009808 1.5e-14 85.5 70 60.0
AT2G18490 Arabidopsis thaliana HOM05D008053 ORTHO05D009808 2.6e-14 84.7 175 38.9
PGR119G1672 Punica granatum HOM05D008053 ORTHO05D009808 2.2e-13 81.6 82 48.8
AL3G47500 Arabidopsis lyrata HOM05D008053 ORTHO05D009808 3.8e-13 80.9 69 56.5
Psat6g241760 Pisum sativum HOM05D008053 ORTHO05D009808 6.5e-13 80.1 96 46.9
Glyma.10G295200 Glycine max HOM05D008053 ORTHO05D009808 8.5e-13 79.7 90 44.4
Psat6g241800 Pisum sativum HOM05D008053 ORTHO05D009808 1.1e-12 79.3 147 37.4
BcaC06g36417 Brassica carinata HOM05D008053 ORTHO05D009808 1.9e-12 78.6 66 57.6
BcaC06g36419 Brassica carinata HOM05D008053 ORTHO05D009808 2.5e-12 78.2 81 53.1
A07p02220 Brassica napus HOM05D008053 ORTHO05D009808 4.2e-12 77.4 66 56.1
C07p04320 Brassica napus HOM05D008053 ORTHO05D009808 4.2e-12 77.4 81 53.1
BolC7t40826H Brassica oleracea HOM05D008053 ORTHO05D009808 4.2e-12 77.4 81 53.1
BraA07t28016Z Brassica rapa HOM05D008053 ORTHO05D009808 4.2e-12 77.4 66 56.1
BcaB03g16634 Brassica carinata HOM05D008053 ORTHO05D009808 5.5e-12 77.0 78 47.4
Carub.0004s0856 Capsella rubella HOM05D008053 ORTHO05D009808 7.2e-12 76.6 66 54.5
Thhalv10023174m.g Eutrema salsugineum HOM05D008053 ORTHO05D009808 7.2e-12 76.6 66 56.1
AL3G51820 Arabidopsis lyrata HOM05D008053 ORTHO05D009808 9.4e-12 76.3 107 43.0
Cpa.g.sc235.9 Carica papaya HOM05D013188 ORTHO05D009808 9.4e-12 76.3 97 43.3
Medtr3g084720 Medicago truncatula HOM05D008053 ORTHO05D009808 9.4e-12 76.3 71 54.9
Cpa.g.sc1399.1 Carica papaya HOM05D013188 ORTHO05D009808 1.2e-11 75.9 97 42.3
Cpa.g.sc235.11 Carica papaya HOM05D013188 ORTHO05D009808 1.2e-11 75.9 97 42.3
BcaC06g36418 Brassica carinata HOM05D008053 ORTHO05D009808 2.7e-11 74.7 59 55.9
Haze_23012 Corylus avellana HOM05D008053 ORTHO05D009808 3.6e-11 74.3 69 49.3
AT2G15740 Arabidopsis thaliana HOM05D008053 ORTHO05D009808 4.7e-11 73.9 82 43.9
Cfa009650 Carpinus fangiana HOM05D008053 ORTHO05D009808 4.7e-11 73.9 69 49.3
Ca_11393_v3 Cicer arietinum L. HOM05D008053 ORTHO05D009808 4.7e-11 73.9 126 35.7
AT5G22990 Arabidopsis thaliana HOM05D008053 ORTHO05D009808 6.1e-11 73.6 63 58.7
Cpa.g.sc235.13 Carica papaya HOM05D013188 ORTHO05D009808 6.1e-11 73.6 196 30.1
Sp6g22400 Schrenkiella parvula HOM05D008053 ORTHO05D009808 6.1e-11 73.6 60 61.7
AL8G17500 Arabidopsis lyrata HOM05D008053 ORTHO05D009808 1.0e-10 72.8 80 43.8
Thhalv10015522m.g Eutrema salsugineum HOM05D008053 ORTHO05D009808 1.0e-10 72.8 81 50.6
Ca_11392_v3 Cicer arietinum L. HOM05D008053 ORTHO05D009808 1.4e-10 72.4 90 44.4
Lj5g0002040 Lotus japonicus HOM05D008053 ORTHO05D009808 1.4e-10 72.4 75 48.0
THA.LOC104811119 Tarenaya hassleriana HOM05D008053 ORTHO05D009808 1.4e-10 72.4 67 55.2
Carub.0003s3266 Capsella rubella HOM05D008053 ORTHO05D009808 1.8e-10 72.0 85 42.4
Cpa.g.sc235.16 Carica papaya HOM05D013188 ORTHO05D009808 2.3e-10 71.6 78 50.0
AL8G18580 Arabidopsis lyrata HOM05D008053 ORTHO05D009808 3.0e-10 71.2 80 45.0
Sabra03G0159700 Salix brachista HOM05D008053 ORTHO05D009808 3.0e-10 71.2 82 45.1
THA.LOC104799082 Tarenaya hassleriana HOM05D008053 ORTHO05D009808 3.9e-10 70.9 60 60.0
BcaC04g19617 Brassica carinata HOM05D008053 ORTHO05D009808 6.7e-10 70.1 126 38.1
C09p53590 Brassica napus HOM05D008053 ORTHO05D009808 6.7e-10 70.1 126 38.1
BolC9t58235H Brassica oleracea HOM05D008053 ORTHO05D009808 6.7e-10 70.1 126 38.1
Phvul.007G004800 Phaseolus vulgaris HOM05D008053 ORTHO05D009808 8.8e-10 69.7 94 40.4
BcaB08g36385 Brassica carinata HOM05D008053 ORTHO05D009808 1.1e-09 69.3 57 59.6
A10p18040 Brassica napus HOM05D008053 ORTHO05D009808 1.1e-09 69.3 57 59.6
BraA10t43878Z Brassica rapa HOM05D008053 ORTHO05D009808 1.1e-09 69.3 57 59.6
CARHR190540 Cardamine hirsuta HOM05D008053 ORTHO05D009808 1.1e-09 69.3 77 50.6
Cpa.g.sc235.15 Carica papaya HOM05D013188 ORTHO05D009808 1.1e-09 69.3 195 30.3
CARHR039750 Cardamine hirsuta HOM05D008053 ORTHO05D009808 1.5e-09 68.9 84 47.6
Carub.0003s3268 Capsella rubella HOM05D008053 ORTHO05D009808 2.6e-09 68.2 61 49.2
Sp3g31950 Schrenkiella parvula HOM05D008053 ORTHO05D009808 2.6e-09 68.2 55 58.2
AT5G42640 Arabidopsis thaliana HOM05D008053 ORTHO05D009808 3.3e-09 67.8 108 39.8
Carub.0003s3265 Capsella rubella HOM05D008053 ORTHO05D009808 4.4e-09 67.4 81 45.7
Thecc.09G217900 Theobroma cacao HOM05D020410 ORTHO05D029866 4.4e-09 67.4 70 45.7
AL6G34120 Arabidopsis lyrata HOM05D008053 ORTHO05D009808 5.7e-09 67.0 57 59.6
Carub.0003s3269 Capsella rubella HOM05D008053 ORTHO05D009808 5.7e-09 67.0 81 42.0
Carub.0006s2076 Capsella rubella HOM05D008053 ORTHO05D009808 9.7e-09 66.2 57 57.9
Cpa.g.c34836 Carica papaya HOM05D013188 ORTHO05D009808 9.7e-09 66.2 177 31.6
Sc09g0000360 Simmondsia chinensis HOM05D008053 ORTHO05D009808 9.7e-09 66.2 87 39.1
Carub.0008s0673 Capsella rubella HOM05D008053 ORTHO05D009808 1.3e-08 65.9 59 54.2
Manes.03G090200 Manihot esculenta HOM05D008053 ORTHO05D009808 1.3e-08 65.9 72 48.6
VMungo0720G0435 Vigna mungo HOM05D008053 ORTHO05D009808 1.3e-08 65.9 66 47.0
CARHR109100 Cardamine hirsuta HOM05D008053 ORTHO05D009808 1.7e-08 65.5 56 51.8
COL.COLO4_10423 Corchorus olitorius HOM05D020410 ORTHO05D009808 1.7e-08 65.5 139 31.7
Psat0s3483g0040 Pisum sativum HOM05D008053 ORTHO05D009808 1.7e-08 65.5 54 57.4
Carub.0008s0555 Capsella rubella HOM05D008053 ORTHO05D009808 3.7e-08 64.3 56 55.4
Ciclev10017443m.g Citrus clementina HOM05D013188 ORTHO05D009808 4.8e-08 63.9 173 32.9
Psat6g240400 Pisum sativum HOM05D008053 ORTHO05D009808 4.8e-08 63.9 133 37.6
BolC7t40827H Brassica oleracea HOM05D008053 ORTHO05D009808 4.1e-07 60.8 47 61.7
Cpa.g.sc191.2 Carica papaya HOM05D013188 ORTHO05D009808 1.2e-06 59.3 70 45.7
COL.COLO4_10408 Corchorus olitorius HOM05D020410 ORTHO05D009808 1.2e-06 59.3 86 39.5
VMungo0720G1236 Vigna mungo HOM05D008053 ORTHO05D009808 1.2e-06 59.3 42 69.0
arahy.Tifrunner.gnm1.ann1.QT88WB Arachis hypogaea HOM05D001116 ORTHO05D009808 5.9e-06 57.0 53 50.9


User provided reference genes

Program Settings