Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc234.11 Carica papaya HOM05D002120 ORTHO05D002217 1.1e-50 204.1 226 100.0
CANSAT01G1671 Cannabis sativa HOM05D002120 ORTHO05D002217 6.3e-14 82.0 87 82.8
DCAR_002050 Daucus carota HOM05D002120 ORTHO05D002217 4.1e-13 79.3 87 80.5
TPR.G6867 Trifolium pratense HOM05D002120 ORTHO05D002217 7.0e-13 78.6 81 79.0
COL.COLO4_24838 Corchorus olitorius HOM05D002120 ORTHO05D002217 3.5e-12 76.3 87 75.9
HanXRQChr13g0406021 Helianthus annuus HOM05D002120 ORTHO05D002217 1.3e-11 74.3 87 78.2
Duzib168G0899 Durio zibethinus HOM05D002120 ORTHO05D002217 1.7e-11 73.9 87 78.2
RcHm_v2.0_Chr5g0077331 Rosa chinensis HOM05D002120 ORTHO05D002217 3.8e-11 72.8 87 77.0
Lj1P360T22 Lonicera japonica HOM05D002120 ORTHO05D002217 8.5e-11 71.6 87 77.0
CSS0013601 Camellia sinensis var. sinensis HOM05D002120 ORTHO05D002217 1.1e-10 71.2 81 67.9
CSS0036964 Camellia sinensis var. sinensis HOM05D002120 ORTHO05D002217 1.1e-10 71.2 81 66.7
COL.COLO4_24840 Corchorus olitorius HOM05D002120 ORTHO05D002217 1.1e-10 71.2 87 77.0
COL.COLO4_24841 Corchorus olitorius HOM05D002120 ORTHO05D002217 1.1e-10 71.2 87 74.7
Dinv08043 Davidia involucrata HOM05D002120 ORTHO05D002217 1.1e-10 71.2 87 66.7
ECA238G1392 Erigeron canadensis HOM05D002120 ORTHO05D002217 1.1e-10 71.2 87 77.0
BcaB04g20626 Brassica carinata HOM05D002120 ORTHO05D002217 1.9e-10 70.5 216 68.5
COL.COLO4_24839 Corchorus olitorius HOM05D002120 ORTHO05D002217 1.9e-10 70.5 87 74.7
FvH4_3g43270 Fragaria vesca HOM05D002120 ORTHO05D002217 1.9e-10 70.5 87 75.9
FAN11G3909 Fragaria x ananassa HOM05D002120 ORTHO05D002217 1.9e-10 70.5 87 75.9
FAN16G0280 Fragaria x ananassa HOM05D002120 ORTHO05D002217 1.9e-10 70.5 87 75.9
FAN25G0860 Fragaria x ananassa HOM05D002120 ORTHO05D002217 1.9e-10 70.5 87 75.9
Lsat_1_v5_gn_2_100901 Lactuca sativa HOM05D002120 ORTHO05D002217 1.9e-10 70.5 87 74.7
Eucgr.B03671 Eucalyptus grandis HOM05D002120 ORTHO05D002217 2.5e-10 70.1 87 71.3
TWI34G1440 Tripterygium wilfordii HOM05D002120 ORTHO05D002217 3.2e-10 69.7 86 75.6
Haze_23078 Corylus avellana HOM05D002120 ORTHO05D002217 4.2e-10 69.3 87 65.5
Lsat_1_v5_gn_1_66441 Lactuca sativa HOM05D002120 ORTHO05D002217 4.2e-10 69.3 87 74.7
Lalb_Chr24g0397001 Lupinus albus HOM05D002120 ORTHO05D002217 7.2e-10 68.6 87 75.9
FAN21G1785 Fragaria x ananassa HOM05D002120 ORTHO05D002217 9.4e-10 68.2 87 74.7
Gohir.A05G068100 Gossypium hirsutum HOM05D002120 ORTHO05D002217 9.4e-10 68.2 87 75.9
HanXRQChr03g0070261 Helianthus annuus HOM05D002120 ORTHO05D002217 9.4e-10 68.2 87 74.7
HanXRQChr13g0407051 Helianthus annuus HOM05D002120 ORTHO05D002217 9.4e-10 68.2 87 74.7
Thecc.09G226800 Theobroma cacao HOM05D002120 ORTHO05D002217 9.4e-10 68.2 87 73.6
DCAR_029942 Daucus carota HOM05D002120 ORTHO05D002217 1.2e-09 67.8 87 73.6
Oeu055807.1 Olea europaea HOM05D002120 ORTHO05D002217 1.2e-09 67.8 87 75.9
TWI60G0167 Tripterygium wilfordii HOM05D002120 ORTHO05D002217 1.2e-09 67.8 86 74.4
Aa31LG8G7650 Aethionema arabicum HOM05D002120 ORTHO05D002217 1.6e-09 67.4 86 72.1
AL3G34740 Arabidopsis lyrata HOM05D002120 ORTHO05D002217 1.6e-09 67.4 86 74.4
AT3G20820 Arabidopsis thaliana HOM05D002120 ORTHO05D002217 1.6e-09 67.4 86 74.4
A01p34010 Brassica napus HOM05D002120 ORTHO05D002217 1.6e-09 67.4 86 74.4
PGR102G0789 Punica granatum HOM05D002120 ORTHO05D002217 1.6e-09 67.4 87 73.6
Sp3g18840 Schrenkiella parvula HOM05D002120 ORTHO05D002217 1.6e-09 67.4 86 74.4
Migut.D00569 Erythranthe guttata HOM05D002120 ORTHO05D002217 2.1e-09 67.0 87 74.7
Atru.chr3.2562 Acer truncatum HOM05D002120 ORTHO05D002217 3.6e-09 66.2 78 82.1
BcaC09g49025 Brassica carinata HOM05D002120 ORTHO05D002217 3.6e-09 66.2 86 73.3
C01p43380 Brassica napus HOM05D002120 ORTHO05D002217 3.6e-09 66.2 86 73.3
BolC1t04300H Brassica oleracea HOM05D002120 ORTHO05D002217 3.6e-09 66.2 86 73.3
BraA01t03505Z Brassica rapa HOM05D002120 ORTHO05D002217 3.6e-09 66.2 86 73.3
Lsat_1_v5_gn_6_48301 Lactuca sativa HOM05D002120 ORTHO05D002217 3.6e-09 66.2 86 74.4
BcaC05g28275 Brassica carinata HOM05D002120 ORTHO05D002217 4.7e-09 65.9 86 73.3
A05p27960 Brassica napus HOM05D002120 ORTHO05D002217 4.7e-09 65.9 86 73.3
C05p43250 Brassica napus HOM05D002120 ORTHO05D002217 4.7e-09 65.9 86 73.3
BolC5t33055H Brassica oleracea HOM05D002120 ORTHO05D002217 4.7e-09 65.9 86 73.3
BraA05t21679Z Brassica rapa HOM05D002120 ORTHO05D002217 4.7e-09 65.9 86 73.3
CARHR096680 Cardamine hirsuta HOM05D002120 ORTHO05D002217 4.7e-09 65.9 86 73.3
BcaB06g26155 Brassica carinata HOM05D002120 ORTHO05D002217 6.1e-09 65.5 86 73.3
SalBow4G2984 Salvia bowleyana HOM05D002120 ORTHO05D002217 6.1e-09 65.5 87 73.6
Potri.001G017500 Populus trichocarpa HOM05D002120 ORTHO05D002217 8.0e-09 65.1 86 73.3
Potri.003G207000 Populus trichocarpa HOM05D002120 ORTHO05D002217 8.0e-09 65.1 86 74.4
Manes.06G167500 Manihot esculenta HOM05D002120 ORTHO05D002217 1.4e-08 64.3 87 73.6
Sabra01G0012200 Salix brachista HOM05D002120 ORTHO05D002217 1.4e-08 64.3 86 73.3
Sopen11g023470 Solanum pennellii HOM05D002120 ORTHO05D002217 1.4e-08 64.3 86 73.3
MSTRG.21404 Avicennia marina HOM05D002120 ORTHO05D002217 1.8e-08 63.9 87 73.6
CAN.G1255.1 Capsicum annuum HOM05D002120 ORTHO05D002217 1.8e-08 63.9 86 72.1
Peaxi162Scf00071g01137 Petunia axillaris HOM05D002120 ORTHO05D002217 1.8e-08 63.9 87 73.6
Cfa010740 Carpinus fangiana HOM05D002120 ORTHO05D002217 2.3e-08 63.5 28 92.9
Manes.14G013200 Manihot esculenta HOM05D002120 ORTHO05D002217 2.3e-08 63.5 87 74.7
Nitab4.5_0000175g0030 Nicotiana tabacum HOM05D002120 ORTHO05D002217 2.3e-08 63.5 86 72.1
Nitab4.5_0002278g0040 Nicotiana tabacum HOM05D002120 ORTHO05D002217 2.3e-08 63.5 86 72.1
SGA_v2.0_scaffold247G44838 Striga asiatica HOM05D002120 ORTHO05D002217 2.3e-08 63.5 87 73.6
ECA233G3455 Erigeron canadensis HOM05D002120 ORTHO05D002217 3.0e-08 63.2 87 73.6
Peaxi162Scf00839g00013 Petunia axillaris HOM05D002120 ORTHO05D002217 3.0e-08 63.2 86 72.1
Sabra03G0152700 Salix brachista HOM05D002120 ORTHO05D002217 3.0e-08 63.2 87 74.7
Solyc11g056680.1 Solanum lycopersicum HOM05D002120 ORTHO05D002217 3.0e-08 63.2 86 73.3
PGSC0003DMG400001252 Solanum tuberosum HOM05D002120 ORTHO05D002217 3.0e-08 63.2 86 72.1
Ca_27113_v3 Cicer arietinum L. HOM05D002120 ORTHO05D002217 5.2e-08 62.4 28 89.3
ClCG10G012510 Citrullus lanatus HOM05D002120 ORTHO05D002217 6.8e-08 62.0 28 89.3
CsaV3_3G032280 Cucumis sativus L. HOM05D002120 ORTHO05D002217 6.8e-08 62.0 28 89.3
MD03G1023300 Malus domestica HOM05D002120 ORTHO05D002217 6.8e-08 62.0 76 55.3
Sed0022689 Sechium edule HOM05D002120 ORTHO05D002217 6.8e-08 62.0 28 89.3
TPR.G14043 Trifolium pratense HOM05D002120 ORTHO05D002217 6.8e-08 62.0 28 89.3
Dinv36290 Davidia involucrata HOM05D002120 ORTHO05D002217 8.8e-08 61.6 76 65.8
Eucgr.J00794 Eucalyptus grandis HOM05D002120 ORTHO05D002217 8.8e-08 61.6 77 81.8
Prupe.2G009800 Prunus persica HOM05D002120 ORTHO05D002217 8.8e-08 61.6 28 89.3
MELO3C023962.2 Cucumis melo HOM05D002120 ORTHO05D002217 1.2e-07 61.2 27 92.6
Sabra09G0047600 Salix brachista HOM05D002120 ORTHO05D002217 1.2e-07 61.2 28 92.9
CiPaw.13G003000 Carya illinoinensis HOM05D002120 ORTHO05D002217 1.5e-07 60.8 28 89.3
LjContig00081g0016558 Lotus japonicus HOM05D002120 ORTHO05D002217 1.5e-07 60.8 28 89.3
CAN.G170.125 Capsicum annuum HOM05D002120 ORTHO05D002217 2.0e-07 60.5 27 92.6
CsaV3_4G024080 Cucumis sativus L. HOM05D002120 ORTHO05D002217 2.0e-07 60.5 87 69.0
Nitab4.5_0001542g0020 Nicotiana tabacum HOM05D002120 ORTHO05D002217 2.0e-07 60.5 27 92.6
Nitab4.5_0011905g0010 Nicotiana tabacum HOM05D002120 ORTHO05D002217 2.0e-07 60.5 27 92.6
Sed0018219 Sechium edule HOM05D002120 ORTHO05D002217 2.0e-07 60.5 87 60.9
Solyc01g086920.3 Solanum lycopersicum HOM05D002120 ORTHO05D002217 2.0e-07 60.5 27 92.6
Sopen01g033920 Solanum pennellii HOM05D002120 ORTHO05D002217 2.0e-07 60.5 27 92.6
PGSC0003DMG400006880 Solanum tuberosum HOM05D002120 ORTHO05D002217 2.0e-07 60.5 27 92.6
Cc02_g27550 Coffea canephora HOM05D002120 ORTHO05D002217 2.6e-07 60.1 28 85.7
Gohir.A08G027300 Gossypium hirsutum HOM05D002120 ORTHO05D002217 2.6e-07 60.1 28 85.7
Gohir.D08G038000 Gossypium hirsutum HOM05D002120 ORTHO05D002217 2.6e-07 60.1 28 85.7
Gorai.004G036000 Gossypium raimondii HOM05D002120 ORTHO05D002217 2.6e-07 60.1 28 85.7
Potri.009G064300 Populus trichocarpa HOM05D002120 ORTHO05D002217 2.6e-07 60.1 28 89.3
Sed0014666 Sechium edule HOM05D002120 ORTHO05D002217 2.6e-07 60.1 28 85.7
CANSAT54G0736 Cannabis sativa HOM05D002120 ORTHO05D002217 3.4e-07 59.7 77 79.2
Carub.0003s2078 Capsella rubella HOM05D002120 ORTHO05D002217 3.4e-07 59.7 76 78.9
Ca_23872_v3 Cicer arietinum L. HOM05D002120 ORTHO05D002217 3.4e-07 59.7 28 82.1
Ciclev10031896m.g Citrus clementina HOM05D002120 ORTHO05D002217 3.4e-07 59.7 28 85.7
Eucgr.G03393 Eucalyptus grandis HOM05D002120 ORTHO05D002217 3.4e-07 59.7 28 85.7
Medtr3g027940 Medicago truncatula HOM05D002120 ORTHO05D002217 3.4e-07 59.7 28 82.1
Medtr8g036920 Medicago truncatula HOM05D002120 ORTHO05D002217 3.4e-07 59.7 28 82.1
TPR.G21720 Trifolium pratense HOM05D002120 ORTHO05D002217 3.4e-07 59.7 28 82.1
Glyma.08G152800 Glycine max HOM05D002120 ORTHO05D002217 5.7e-07 58.9 28 82.1
THA.LOC104826670 Tarenaya hassleriana HOM05D002120 ORTHO05D002217 5.7e-07 58.9 28 82.1
VMungo1127G1045 Vigna mungo HOM05D002120 ORTHO05D002217 5.7e-07 58.9 28 78.6
CSS0006112 Camellia sinensis var. sinensis HOM05D002120 ORTHO05D002217 7.5e-07 58.5 77 68.8
Duzib268G1576 Durio zibethinus HOM05D002120 ORTHO05D002217 7.5e-07 58.5 28 82.1
FvH4_7g00720 Fragaria vesca HOM05D002120 ORTHO05D002217 7.5e-07 58.5 28 82.1
FAN03G3516 Fragaria x ananassa HOM05D002120 ORTHO05D002217 7.5e-07 58.5 28 82.1
FAN10G3388 Fragaria x ananassa HOM05D002120 ORTHO05D002217 7.5e-07 58.5 28 82.1
Psat0s3011g0040 Pisum sativum HOM05D002120 ORTHO05D002217 7.5e-07 58.5 28 78.6
Gorai.009G072100 Gossypium raimondii HOM05D002120 ORTHO05D002217 9.8e-07 58.2 80 77.5
Psat5g204800 Pisum sativum HOM05D002120 ORTHO05D002217 9.8e-07 58.2 28 82.1
SalBow5G1686 Salvia bowleyana HOM05D002120 ORTHO05D002217 9.8e-07 58.2 27 88.9
Actinidia06882 Actinidia chinensis HOM05D002120 ORTHO05D002217 1.3e-06 57.8 78 76.9
Lalb_Chr25g0283201 Lupinus albus HOM05D002120 ORTHO05D002217 1.3e-06 57.8 28 82.1
MD07G1006700 Malus domestica HOM05D002120 ORTHO05D002217 1.3e-06 57.8 28 82.1
COL.COLO4_23897 Corchorus olitorius HOM05D002120 ORTHO05D002217 1.7e-06 57.4 28 82.1
HanXRQChr13g0403971 Helianthus annuus HOM05D002120 ORTHO05D002217 1.7e-06 57.4 86 69.8
Manes.07G004200 Manihot esculenta HOM05D002120 ORTHO05D002217 1.7e-06 57.4 28 82.1
MD11G1028200 Malus domestica HOM05D002120 ORTHO05D002217 2.2e-06 57.0 75 53.3
MD02G1315200 Malus domestica HOM05D002120 ORTHO05D002217 2.8e-06 56.6 28 82.1
Potri.001G269800 Populus trichocarpa HOM05D002120 ORTHO05D002217 2.8e-06 56.6 28 82.1
Cc01_g04720 Coffea canephora HOM05D002120 ORTHO05D002217 3.7e-06 56.2 76 80.3
FAN06G3278 Fragaria x ananassa HOM05D002120 ORTHO05D002217 3.7e-06 56.2 28 78.6
Glyma.12G238600 Glycine max HOM05D002120 ORTHO05D002217 3.7e-06 56.2 28 75.0
Glyma.13G204300 Glycine max HOM05D002120 ORTHO05D002217 3.7e-06 56.2 28 75.0
Phvul.005G036600 Phaseolus vulgaris HOM05D002120 ORTHO05D002217 3.7e-06 56.2 28 82.1
RcHm_v2.0_Chr1g0314931 Rosa chinensis HOM05D002120 ORTHO05D002217 3.7e-06 56.2 28 78.6
Thecc.01G413700 Theobroma cacao HOM05D002120 ORTHO05D002217 3.7e-06 56.2 28 78.6
Nn2g15495 Nelumbo nucifera HOM05D002120 ORTHO05D002217 6.3e-06 55.5 28 78.6
QL01p005650 Quercus lobata HOM05D002120 ORTHO05D002217 6.3e-06 55.5 75 68.0
SGA_v2.0_scaffold260G45849 Striga asiatica HOM05D002120 ORTHO05D002217 6.3e-06 55.5 27 81.5
TWI09G1131 Tripterygium wilfordii HOM05D002120 ORTHO05D002217 6.3e-06 55.5 28 78.6
QL04p005257 Quercus lobata HOM05D002120 ORTHO05D002217 8.3e-06 55.1 26 80.8
THA.LOC104821756 Tarenaya hassleriana HOM05D002120 ORTHO05D002217 8.3e-06 55.1 76 73.7
TAR633G0929 Trochodendron aralioides HOM05D002120 ORTHO05D002217 8.3e-06 55.1 27 85.2


User provided reference genes

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