Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc234.1 Carica papaya HOM05D003599 ORTHO05D004221 2.4e-88 328.9 182 100.0
QL04p004288 Quercus lobata HOM05D003599 ORTHO05D004221 2.0e-63 246.1 181 76.8
Dinv43904 Davidia involucrata HOM05D003599 ORTHO05D004221 2.9e-62 242.3 179 76.5
Rhsim07G0053800 Rhododendron simsii HOM05D003599 ORTHO05D004221 2.9e-62 242.3 178 77.5
QL04p003920 Quercus lobata HOM05D003599 ORTHO05D004221 3.8e-62 241.9 181 76.8
vmacro13647 Vaccinium macrocarpon HOM05D003599 ORTHO05D004221 7.3e-61 237.7 178 74.2
VMungo1080G1621 Vigna mungo HOM05D003599 ORTHO05D004221 9.5e-61 237.3 183 74.9
Haze_03250 Corylus avellana HOM05D003599 ORTHO05D004221 1.6e-60 236.5 182 75.3
Phvul.005G037000 Phaseolus vulgaris HOM05D003599 ORTHO05D004221 1.0e-59 233.8 182 76.4
Ca_26231_v3 Cicer arietinum L. HOM05D003599 ORTHO05D004221 3.0e-59 232.3 193 71.5
Duzib268G0099 Durio zibethinus HOM05D003599 ORTHO05D004221 1.5e-58 229.9 179 72.1
CiPaw.13G001900 Carya illinoinensis HOM05D003599 ORTHO05D004221 2.6e-58 229.2 182 75.8
Eucgr.J01252 Eucalyptus grandis HOM05D003599 ORTHO05D004221 4.4e-58 228.4 179 73.7
MD07G1005500 Malus domestica HOM05D003599 ORTHO05D004221 7.5e-58 227.6 182 72.0
Potri.009G065300 Populus trichocarpa HOM05D003599 ORTHO05D004221 2.2e-57 226.1 181 74.6
MD02G1316400 Malus domestica HOM05D003599 ORTHO05D004221 2.9e-57 225.7 182 70.3
CANSAT56G1134 Cannabis sativa HOM05D003599 ORTHO05D004221 4.9e-57 224.9 182 72.0
Oeu034893.1 Olea europaea HOM05D003599 ORTHO05D004221 8.3e-57 224.2 179 71.5
Lalb_Chr20g0108081 Lupinus albus HOM05D003599 ORTHO05D004221 1.1e-56 223.8 182 72.0
Atru.chr11.2631 Acer truncatum HOM05D003599 ORTHO05D004221 1.4e-56 223.4 184 70.7
Glyma.08G152400 Glycine max HOM05D003599 ORTHO05D004221 1.4e-56 223.4 182 70.3
Glyma.15G271800 Glycine max HOM05D003599 ORTHO05D004221 2.4e-56 222.6 188 70.7
Lj3g0018349 Lotus japonicus HOM05D003599 ORTHO05D004221 3.2e-56 222.2 183 73.8
Psat5g207160 Pisum sativum HOM05D003599 ORTHO05D004221 3.2e-56 222.2 191 69.1
ClCG10G012550 Citrullus lanatus HOM05D003599 ORTHO05D004221 9.2e-56 220.7 183 71.0
Manes.07G003200 Manihot esculenta HOM05D003599 ORTHO05D004221 9.2e-56 220.7 182 72.5
arahy.Tifrunner.gnm1.ann1.X69RYV Arachis hypogaea HOM05D003599 ORTHO05D004221 1.6e-55 219.9 181 69.6
arahy.Tifrunner.gnm1.ann1.V362W9 Arachis hypogaea HOM05D003599 ORTHO05D004221 2.0e-55 219.5 181 69.6
MELO3C023955.2 Cucumis melo HOM05D003599 ORTHO05D004221 3.5e-55 218.8 183 70.5
Lalb_Chr25g0283241 Lupinus albus HOM05D003599 ORTHO05D004221 7.8e-55 217.6 182 70.9
CsaV3_3G032340 Cucumis sativus L. HOM05D003599 ORTHO05D004221 1.0e-54 217.2 183 71.6
Medtr3g027610 Medicago truncatula HOM05D003599 ORTHO05D004221 1.3e-54 216.9 191 69.1
MSTRG.17057 Avicennia marina HOM05D003599 ORTHO05D004221 1.7e-54 216.5 179 71.5
Ciclev10030514m.g Citrus clementina HOM05D003599 ORTHO05D004221 3.0e-54 215.7 183 69.9
Thecc.01G414600 Theobroma cacao HOM05D003599 ORTHO05D004221 3.9e-54 215.3 178 70.8
TWI73G0659 Tripterygium wilfordii HOM05D003599 ORTHO05D004221 5.0e-54 214.9 176 71.0
Gohir.D08G167000 Gossypium hirsutum HOM05D003599 ORTHO05D004221 1.5e-53 213.4 180 68.9
Cc02_g27450 Coffea canephora HOM05D003599 ORTHO05D004221 1.9e-53 213.0 183 71.6
Gorai.004G174400 Gossypium raimondii HOM05D003599 ORTHO05D004221 3.3e-53 212.2 180 68.3
QL04p003614 Quercus lobata HOM05D003599 ORTHO05D004221 3.3e-53 212.2 181 69.6
TWI53G1897 Tripterygium wilfordii HOM05D003599 ORTHO05D004221 3.3e-53 212.2 182 69.8
Potri.001G271200 Populus trichocarpa HOM05D003599 ORTHO05D004221 7.3e-53 211.1 184 69.0
Sed0009971 Sechium edule HOM05D003599 ORTHO05D004221 1.6e-52 209.9 182 69.2
TPR.G12253 Trifolium pratense HOM05D003599 ORTHO05D004221 1.6e-52 209.9 190 66.8
GSVIVG01032046001 Vitis vinifera HOM05D003599 ORTHO05D004221 1.6e-52 209.9 197 65.0
Nn7g36074 Nelumbo nucifera HOM05D003599 ORTHO05D004221 6.2e-52 208.0 179 69.3
RcHm_v2.0_Chr4g0410621 Rosa chinensis HOM05D003599 ORTHO05D004221 2.3e-51 206.1 184 67.9
THA.LOC104801983 Tarenaya hassleriana HOM05D003599 ORTHO05D004221 2.3e-51 206.1 183 66.7
Prupe.2G007800 Prunus persica HOM05D003599 ORTHO05D004221 3.1e-51 205.7 182 71.4
COL.COLO4_23904 Corchorus olitorius HOM05D003599 ORTHO05D004221 2.6e-50 202.6 183 68.3
Nitab4.5_0004883g0020 Nicotiana tabacum HOM05D003599 ORTHO05D004221 5.8e-50 201.4 178 64.6
Sc11g0009360 Simmondsia chinensis HOM05D003599 ORTHO05D004221 1.3e-49 200.3 182 66.5
Sed0001465 Sechium edule HOM05D003599 ORTHO05D004221 1.7e-49 199.9 182 67.0
Migut.B01342 Erythranthe guttata HOM05D003599 ORTHO05D004221 4.9e-49 198.4 186 64.0
Nitab4.5_0001542g0140 Nicotiana tabacum HOM05D003599 ORTHO05D004221 6.4e-49 198.0 178 64.0
Lj3g0008997 Lotus japonicus HOM05D003599 ORTHO05D004221 7.0e-48 194.5 183 65.0
MBI01_g43277_MAGBIO Magnolia biondii HOM05D003599 ORTHO05D004221 1.6e-47 193.4 180 63.3
Peaxi162Scf00058g00215 Petunia axillaris HOM05D003599 ORTHO05D004221 2.0e-47 193.0 182 62.6
Sabra16G0166600 Salix brachista HOM05D003599 ORTHO05D004221 6.0e-47 191.4 187 64.2
FvH4_4g12380 Fragaria vesca HOM05D003599 ORTHO05D004221 7.8e-47 191.0 183 66.1
FAN12G0010 Fragaria x ananassa HOM05D003599 ORTHO05D004221 7.8e-47 191.0 183 66.1
FAN12G2088 Fragaria x ananassa HOM05D003599 ORTHO05D004221 7.8e-47 191.0 183 66.1
PSO384G0358 Papaver somniferum HOM05D003599 ORTHO05D004221 7.8e-47 191.0 179 67.0
FAN22G1903 Fragaria x ananassa HOM05D003599 ORTHO05D004221 1.0e-46 190.7 183 66.1
Actinidia31044 Actinidia chinensis HOM05D003599 ORTHO05D004221 1.3e-46 190.3 182 64.3
PSO339G0158 Papaver somniferum HOM05D003599 ORTHO05D004221 1.3e-46 190.3 179 67.0
ATR0605G051 Amborella trichopoda HOM05D003599 ORTHO05D004221 2.3e-46 189.5 184 63.6
FAN17G0189 Fragaria x ananassa HOM05D003599 ORTHO05D004221 3.0e-46 189.1 183 65.6
QL04p004701 Quercus lobata HOM05D000311 ORTHO05D000183 5.0e-46 188.3 154 69.5
FAN07G2146 Fragaria x ananassa HOM05D003599 ORTHO05D004221 1.5e-45 186.8 183 65.0
Lj7C568T3 Lonicera japonica HOM05D003599 ORTHO05D004221 5.6e-45 184.9 183 65.0
QL04p003768 Quercus lobata HOM05D003599 ORTHO05D004221 5.6e-45 184.9 181 63.5
CSS0018905 Camellia sinensis var. sinensis HOM05D003599 ORTHO05D004221 1.6e-44 183.3 183 64.5
Sabra09G0048500 Salix brachista HOM05D003599 ORTHO05D004221 2.1e-44 183.0 162 69.1
PGSC0003DMG400025257 Solanum tuberosum HOM05D003599 ORTHO05D004221 1.1e-43 180.6 182 60.4
unitig_0.g1375 Utricularia gibba HOM05D003599 ORTHO05D004221 6.8e-43 177.9 182 60.4
Aa31LG10G7230 Aethionema arabicum HOM05D003599 ORTHO05D004221 2.6e-42 176.0 176 60.8
Gohir.A08G146100 Gossypium hirsutum HOM05D003599 ORTHO05D004221 4.4e-42 175.3 179 60.9
DCAR_029635 Daucus carota HOM05D003599 ORTHO05D004221 1.4e-40 170.2 190 57.4
Carub.0005s1848 Capsella rubella HOM05D003599 ORTHO05D004221 3.2e-40 169.1 177 59.9
CARHR161880 Cardamine hirsuta HOM05D003599 ORTHO05D004221 9.2e-40 167.5 177 59.3
HanXRQChr01g0017271 Helianthus annuus HOM05D003599 ORTHO05D004221 9.2e-40 167.5 177 59.9
AL5G32710 Arabidopsis lyrata HOM05D003599 ORTHO05D004221 1.2e-39 167.2 177 59.9
AT3G52140 Arabidopsis thaliana HOM05D003599 ORTHO05D004221 1.2e-39 167.2 178 60.1
CAN.G1393.20 Capsicum annuum HOM05D003599 ORTHO05D004221 2.7e-39 166.0 182 57.1
unitig_61.g26447 Utricularia gibba HOM05D003599 ORTHO05D004221 3.0e-38 162.5 181 58.6
Migut.N01485 Erythranthe guttata HOM05D003599 ORTHO05D004221 1.1e-37 160.6 178 58.4
MBI01_g15744_MAGBIO Magnolia biondii HOM05D003599 ORTHO05D004221 1.9e-37 159.8 128 68.8
Sopen01g033750 Solanum pennellii HOM05D003599 ORTHO05D004221 3.3e-37 159.1 133 68.4
Lsat_1_v5_gn_1_110320 Lactuca sativa HOM05D003599 ORTHO05D004221 1.2e-36 157.1 183 56.3
CDE05G2426 Ceratophyllum demersum HOM05D003599 ORTHO05D004221 3.6e-36 155.6 177 56.5
Thhalv10010065m.g Eutrema salsugineum HOM05D003599 ORTHO05D004221 8.1e-36 154.5 176 59.7
SalBow4G2031 Salvia bowleyana HOM05D003599 ORTHO05D004221 8.9e-35 151.0 182 55.5
SEGI_10833 Sequoiadendron giganteum HOM05D003599 ORTHO05D004221 2.0e-34 149.8 187 50.3
HPP92_003005 Vanilla planifolia HOM05D003599 ORTHO05D004221 7.6e-34 147.9 184 53.8
Sp5g10140 Schrenkiella parvula HOM05D003599 ORTHO05D004221 1.7e-33 146.7 177 58.2
HPP92_003004 Vanilla planifolia HOM05D003599 ORTHO05D004221 2.2e-33 146.4 184 53.3
AUR62009368 Chenopodium quinoa HOM05D003599 ORTHO05D004221 1.1e-32 144.1 178 55.6
AUR62023049 Chenopodium quinoa HOM05D003599 ORTHO05D004221 7.1e-32 141.4 178 55.1
PGR044G0248 Punica granatum HOM05D003599 ORTHO05D004221 2.1e-31 139.8 182 52.2
Aqoxy1G00213 Aquilegia oxysepala HOM05D003599 ORTHO05D004221 6.0e-31 138.3 177 49.2
A04p07220 Brassica napus HOM05D003599 ORTHO05D004221 1.3e-30 137.1 176 55.7
BraA04t16417Z Brassica rapa HOM05D003599 ORTHO05D004221 1.3e-30 137.1 176 55.7
QL04p004437 Quercus lobata HOM05D003599 ORTHO05D004221 2.3e-30 136.3 113 68.1
QL04p003812 Quercus lobata HOM05D003599 ORTHO05D004221 5.1e-30 135.2 116 68.1
C04p40780 Brassica napus HOM05D003599 ORTHO05D004221 1.5e-29 133.7 175 53.7
BolC4t25662H Brassica oleracea HOM05D003599 ORTHO05D004221 1.5e-29 133.7 175 53.7
Ah.10g024830 Amaranthus hybridus HOM05D003599 ORTHO05D004221 1.1e-27 127.5 179 50.3
arahy.Tifrunner.gnm1.ann1.7I49QA Arachis hypogaea HOM05D003599 ORTHO05D004221 3.1e-27 125.9 155 56.8
ECA248G3304 Erigeron canadensis HOM05D003599 ORTHO05D004221 3.1e-27 125.9 172 50.6
Actinidia28306 Actinidia chinensis HOM05D003599 ORTHO05D004221 4.0e-27 125.6 106 68.9
BraA09t39983Z Brassica rapa HOM05D003599 ORTHO05D004221 6.9e-27 124.8 176 52.3
VMungo1215G1265 Vigna mungo HOM05D003599 ORTHO05D004221 4.4e-26 122.1 77 83.1
C08p27410 Brassica napus HOM05D003599 ORTHO05D004221 5.8e-26 121.7 175 51.4
A09p45200 Brassica napus HOM05D003599 ORTHO05D004221 2.2e-25 119.8 175 51.4
EL10Ac2g04309 Beta vulgaris HOM05D003599 ORTHO05D004221 2.9e-25 119.4 176 51.7
Actinidia31688 Actinidia chinensis HOM05D003599 ORTHO05D004221 4.9e-25 118.6 182 47.8
Dinv43470 Davidia involucrata HOM05D003599 ORTHO05D004221 1.4e-24 117.1 161 50.3
CDE05G3296 Ceratophyllum demersum HOM05D003599 ORTHO05D004221 1.3e-22 110.5 87 70.1
BcaC02g09276 Brassica carinata HOM05D003599 ORTHO05D004221 2.3e-22 109.8 174 48.9
Zm00001eb189030 Zea mays HOM05D003599 ORTHO05D004221 5.1e-22 108.6 187 46.5
SHI28922 Sapria himalayana HOM05D003599 ORTHO05D004221 2.5e-21 106.3 146 45.2
arahy.Tifrunner.gnm1.ann1.SKP1EQ Arachis hypogaea HOM05D003599 ORTHO05D004221 5.6e-21 105.1 129 55.8
Zm00001eb252790 Zea mays HOM05D003599 ORTHO05D004221 2.6e-18 96.3 181 43.6
Os02g0717400 Oryza sativa ssp. japonica HOM05D003599 ORTHO05D004221 3.4e-18 95.9 189 43.4
Actinidia32321 Actinidia chinensis HOM05D003599 ORTHO05D004221 2.9e-17 92.8 62 80.6
Mapoly0060s0041 Marchantia polymorpha HOM05D003599 ORTHO05D004221 3.8e-17 92.4 194 40.2
TPR.G12134 Trifolium pratense HOM05D003599 ORTHO05D004221 4.9e-17 92.0 63 74.6
QL93p0073_0296 Quercus lobata HOM05D003599 ORTHO05D004221 8.4e-17 91.3 82 64.6
SGA_v2.0_scaffold260G45866 Striga asiatica HOM05D003599 ORTHO05D004221 7.9e-15 84.7 179 42.5
Pp3c16_5830 Physcomitrium patens HOM05D003599 ORTHO05D004221 1.8e-14 83.6 199 41.2
SMO141G0154 Selaginella moellendorffii HOM05D003599 ORTHO05D004221 6.2e-12 75.1 90 53.3
CBR_g110 Chara braunii HOM05D003599 ORTHO05D004221 6.4e-09 65.1 177 37.9
QL04p004391 Quercus lobata HOM05D003599 ORTHO05D004221 6.4e-09 65.1 95 50.5
TAR369G0496 Trochodendron aralioides HOM05D003599 ORTHO05D004221 4.2e-08 62.4 40 80.0
SGA_v2.0_scaffold5G03126 Striga asiatica HOM05D003599 ORTHO05D004221 1.8e-06 57.0 174 31.6


User provided reference genes

Program Settings