Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc233.10 Carica papaya HOM05D007316 ORTHO05D009393 1.2e-29 132.5 65 100.0
MELO3C021892.2 Cucumis melo HOM05D007316 ORTHO05D009393 1.8e-22 108.6 65 86.2
CANSAT56G2903 Cannabis sativa HOM05D007316 ORTHO05D009393 3.1e-22 107.8 65 83.1
ClCG09G016900 Citrullus lanatus HOM05D007316 ORTHO05D009393 4.0e-22 107.5 65 84.6
Cc02_g36870 Coffea canephora HOM05D007316 ORTHO05D009393 4.0e-22 107.5 65 81.5
CsaV3_2G036390 Cucumis sativus L. HOM05D007316 ORTHO05D009393 4.0e-22 107.5 65 84.6
Sed0015703 Sechium edule HOM05D007316 ORTHO05D009393 4.0e-22 107.5 65 84.6
Manes.17G057300 Manihot esculenta HOM05D007316 ORTHO05D009393 5.3e-22 107.1 65 81.5
Ciclev10023234m.g Citrus clementina HOM05D007316 ORTHO05D009393 9.0e-22 106.3 65 83.1
QL09p015786 Quercus lobata HOM05D007316 ORTHO05D009393 1.5e-21 105.5 64 81.2
QL09p023249 Quercus lobata HOM05D007316 ORTHO05D009393 1.5e-21 105.5 64 81.2
Ca_09261_v3 Cicer arietinum L. HOM05D007316 ORTHO05D009393 2.0e-21 105.1 61 82.0
Potri.004G058400 Populus trichocarpa HOM05D007316 ORTHO05D009393 2.6e-21 104.8 65 80.0
Potri.011G067800 Populus trichocarpa HOM05D007316 ORTHO05D009393 3.4e-21 104.4 65 80.0
GSVIVG01029768001 Vitis vinifera HOM05D007316 ORTHO05D009393 3.4e-21 104.4 65 81.5
Phvul.001G220400 Phaseolus vulgaris HOM05D007316 ORTHO05D009393 4.5e-21 104.0 65 80.0
Duzib128G0483 Durio zibethinus HOM05D007316 ORTHO05D009393 7.6e-21 103.2 65 80.0
FvH4_4g00490 Fragaria vesca HOM05D007316 ORTHO05D009393 7.6e-21 103.2 65 76.9
FAN12G3999 Fragaria x ananassa HOM05D007316 ORTHO05D009393 7.6e-21 103.2 65 76.9
FAN17G1024 Fragaria x ananassa HOM05D007316 ORTHO05D009393 7.6e-21 103.2 65 76.9
FAN22G1131 Fragaria x ananassa HOM05D007316 ORTHO05D009393 7.6e-21 103.2 65 76.9
Medtr7g111090 Medicago truncatula HOM05D007316 ORTHO05D009393 7.6e-21 103.2 65 78.5
QL02p030600 Quercus lobata HOM05D007316 ORTHO05D009393 7.6e-21 103.2 64 79.7
RcHm_v2.0_Chr4g0387841 Rosa chinensis HOM05D007316 ORTHO05D009393 1.0e-20 102.8 65 75.4
RcHm_v2.0_Chr4g0387941 Rosa chinensis HOM05D007316 ORTHO05D009393 1.0e-20 102.8 65 75.4
THA.LOC104813939 Tarenaya hassleriana HOM05D007316 ORTHO05D009393 1.7e-20 102.1 65 78.5
Glyma.19G223500 Glycine max HOM05D007316 ORTHO05D009393 2.2e-20 101.7 65 78.5
RcHm_v2.0_Chr4g0385941 Rosa chinensis HOM05D007316 ORTHO05D009393 2.2e-20 101.7 65 75.4
Eucgr.H00565 Eucalyptus grandis HOM05D007316 ORTHO05D009393 2.9e-20 101.3 65 76.9
Gohir.D13G105800 Gossypium hirsutum HOM05D007316 ORTHO05D009393 2.9e-20 101.3 65 76.9
SalBow3G1440 Salvia bowleyana HOM05D007316 ORTHO05D009393 2.9e-20 101.3 61 80.3
Glyma.03G226500 Glycine max HOM05D007316 ORTHO05D009393 3.8e-20 100.9 65 78.5
Hma1.2p1_0157F.1_g069460 Hydrangea macrophylla HOM05D007316 ORTHO05D009393 4.9e-20 100.5 65 78.5
Lj1g0006735 Lotus japonicus HOM05D007316 ORTHO05D009393 6.5e-20 100.1 64 73.4
Peaxi162Scf00071g00128 Petunia axillaris HOM05D007316 ORTHO05D009393 8.4e-20 99.8 64 70.3
CSS0015421 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.1e-19 99.4 62 77.4
Lalb_Chr04g0260251 Lupinus albus HOM05D007316 ORTHO05D009393 1.9e-19 98.6 65 73.8
Psat3g015560 Pisum sativum HOM05D007316 ORTHO05D009393 1.9e-19 98.6 61 75.4
Thecc.05G261200 Theobroma cacao HOM05D007316 ORTHO05D009393 1.9e-19 98.6 65 76.9
CSS0014503 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 2.5e-19 98.2 62 75.8
CSS0021979 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 2.5e-19 98.2 62 75.8
Duzib106G1284 Durio zibethinus HOM05D007316 ORTHO05D009393 3.2e-19 97.8 65 75.4
arahy.Tifrunner.gnm1.ann1.AE1MMP Arachis hypogaea HOM05D007316 ORTHO05D009393 4.2e-19 97.4 65 75.4
arahy.Tifrunner.gnm1.ann1.CUXT1U Arachis hypogaea HOM05D007316 ORTHO05D009393 4.2e-19 97.4 65 75.4
A07p29930 Brassica napus HOM05D007316 ORTHO05D009393 4.2e-19 97.4 65 73.8
C06p34200 Brassica napus HOM05D007316 ORTHO05D009393 4.2e-19 97.4 65 73.8
BolC6t38541H Brassica oleracea HOM05D007316 ORTHO05D009393 4.2e-19 97.4 65 73.8
BraA07t30632Z Brassica rapa HOM05D007316 ORTHO05D009393 4.2e-19 97.4 65 73.8
Prupe.3G122600 Prunus persica HOM05D007316 ORTHO05D009393 4.2e-19 97.4 65 76.9
Cfa016046 Carpinus fangiana HOM05D007316 ORTHO05D009393 5.5e-19 97.1 65 73.8
Sopen08g002530 Solanum pennellii HOM05D007316 ORTHO05D009393 5.5e-19 97.1 61 72.1
PGSC0003DMG400026307 Solanum tuberosum HOM05D007316 ORTHO05D009393 5.5e-19 97.1 61 72.1
AL2G32940 Arabidopsis lyrata HOM05D007316 ORTHO05D009393 7.1e-19 96.7 65 73.8
Migut.B00683 Erythranthe guttata HOM05D007316 ORTHO05D009393 7.1e-19 96.7 61 73.8
Migut.B00911 Erythranthe guttata HOM05D007316 ORTHO05D009393 7.1e-19 96.7 61 73.8
CARHR066170 Cardamine hirsuta HOM05D007316 ORTHO05D009393 9.3e-19 96.3 60 75.0
TWI23G0494 Tripterygium wilfordii HOM05D007316 ORTHO05D009393 1.2e-18 95.9 65 69.2
COL.COLO4_20544 Corchorus olitorius HOM05D007316 ORTHO05D009393 1.6e-18 95.5 65 69.2
Sp5g28140 Schrenkiella parvula HOM05D007316 ORTHO05D009393 2.7e-18 94.7 65 70.8
Atru.chr12.1494 Acer truncatum HOM05D007316 ORTHO05D009393 3.5e-18 94.4 65 75.4
CSS0022236 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 3.5e-18 94.4 62 75.8
PGR119G2118 Punica granatum HOM05D007316 ORTHO05D009393 3.5e-18 94.4 65 72.3
AT1G73177 Arabidopsis thaliana HOM05D007316 ORTHO05D009393 4.6e-18 94.0 65 70.8
HanXRQChr07g0193721 Helianthus annuus HOM05D007316 ORTHO05D009393 4.6e-18 94.0 62 72.6
Aa31LG4G3460 Aethionema arabicum HOM05D007316 ORTHO05D009393 6.0e-18 93.6 65 70.8
Aqoxy7G02856 Aquilegia oxysepala HOM05D007316 ORTHO05D009393 6.0e-18 93.6 61 70.5
Carub.0002s1996 Capsella rubella HOM05D007316 ORTHO05D009393 6.0e-18 93.6 65 70.8
MD09G1239400 Malus domestica HOM05D007316 ORTHO05D009393 3.0e-17 91.3 57 75.4
Lsat_1_v5_gn_9_84180 Lactuca sativa HOM05D007316 ORTHO05D009393 6.7e-17 90.1 63 66.7
BcaC08g45665 Brassica carinata HOM05D007316 ORTHO05D009393 7.4e-16 86.7 80 60.0
ECA236G4186 Erigeron canadensis HOM05D007316 ORTHO05D009393 2.0e-13 78.6 59 64.4
Os07g0633800 Oryza sativa ssp. japonica HOM05D007316 ORTHO05D009393 1.3e-12 75.9 64 54.7
TAR362G0014 Trochodendron aralioides HOM05D007316 ORTHO05D009393 8.4e-12 73.2 44 81.8
Thhalv10019421m.g Eutrema salsugineum HOM05D007316 ORTHO05D009393 1.1e-11 72.8 60 63.3
CiPaw.05G216300 Carya illinoinensis HOM05D007316 ORTHO05D009393 9.3e-11 69.7 46 76.1
CSS0021742 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.6e-10 68.9 50 68.0
Nn7g37509 Nelumbo nucifera HOM05D007316 ORTHO05D009393 2.1e-10 68.6 43 79.1
Oeu034759.1 Olea europaea HOM05D007316 ORTHO05D009393 2.1e-10 68.6 45 75.6
GSVIVG01026029001 Vitis vinifera HOM05D007316 ORTHO05D009393 2.1e-10 68.6 45 73.3
CSS0008863 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 6.1e-10 67.0 45 73.3
CSS0044079 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 6.1e-10 67.0 45 73.3
CSS0028514 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 7.9e-10 66.6 45 71.1
CSS0044918 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 7.9e-10 66.6 45 71.1
CSS0047183 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 7.9e-10 66.6 45 71.1
vmacro19806 Vaccinium macrocarpon HOM05D007316 ORTHO05D009393 7.9e-10 66.6 44 77.3
EL10Ac8g18312 Beta vulgaris HOM05D007316 ORTHO05D009393 1.0e-09 66.2 43 69.8
CSS0047605 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 3.9e-09 64.3 41 70.7
AUR62021328 Chenopodium quinoa HOM05D007316 ORTHO05D009393 3.9e-09 64.3 43 65.1
Ah.09g230190 Amaranthus hybridus HOM05D007316 ORTHO05D009393 5.1e-09 63.9 51 54.9
CSS0025187 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 5.1e-09 63.9 41 68.3
Mapoly0010s0075 Marchantia polymorpha HOM05D007316 ORTHO05D009393 3.3e-08 61.2 64 46.9
Actinidia11709 Actinidia chinensis HOM05D007316 ORTHO05D009393 4.3e-08 60.8 35 82.9
HPP92_022152 Vanilla planifolia HOM05D007316 ORTHO05D009393 5.7e-08 60.5 60 50.0
MBI18_g28941_MAGBIO Magnolia biondii HOM05D000032 ORTHO05D004701 7.4e-08 60.1 44 65.9
Gorai.013G118500 Gossypium raimondii HOM05D007316 ORTHO05D009393 1.3e-07 59.3 65 53.8
CAN.G530.4 Capsicum annuum HOM05D007316 ORTHO05D009393 1.6e-07 58.9 38 68.4
Solyc08g006570.4 Solanum lycopersicum HOM05D007316 ORTHO05D009393 1.1e-06 56.2 37 67.6
MCO03G596 Micromonas commoda HOM05D007316 ORTHO05D009393 1.4e-06 55.8 56 42.9
Gohir.A13G102600 Gossypium hirsutum HOM05D007316 ORTHO05D009393 3.1e-06 54.7 65 50.8
Rhsim05G0117300 Rhododendron simsii HOM05D007316 ORTHO05D009393 9.0e-06 53.1 68 50.0
RhsimUnG0015700 Rhododendron simsii HOM05D007316 ORTHO05D009393 9.0e-06 53.1 68 50.0


User provided reference genes

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