Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc2319.2 Carica papaya HOM05D004235 ORTHO05D005157 1.7e-274 948.7 475 100.0
Atru.chr7.1524 Acer truncatum HOM05D004235 ORTHO05D005157 3.1e-212 741.9 429 86.0
Cfa003136 Carpinus fangiana HOM05D004235 ORTHO05D005157 4.0e-212 741.5 431 84.9
Haze_25867 Corylus avellana HOM05D004235 ORTHO05D005157 1.7e-210 736.1 431 84.0
Dinv36730 Davidia involucrata HOM05D004235 ORTHO05D005157 1.7e-210 736.1 431 85.4
Duzib168G2142 Durio zibethinus HOM05D004235 ORTHO05D005157 2.9e-210 735.3 429 85.3
Lj7C671G7 Lonicera japonica HOM05D004235 ORTHO05D005157 2.9e-210 735.3 431 84.9
Thecc.09G094700 Theobroma cacao HOM05D004235 ORTHO05D005157 2.4e-209 732.3 429 83.7
Gohir.A05G028200 Gossypium hirsutum HOM05D004235 ORTHO05D005157 4.2e-209 731.5 429 84.1
CSS0042623 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 7.1e-209 730.7 431 84.0
QL02p063521 Quercus lobata HOM05D004235 ORTHO05D005157 7.1e-209 730.7 431 84.5
Gorai.009G030000 Gossypium raimondii HOM05D004235 ORTHO05D005157 1.2e-208 729.9 429 83.7
MD15G1202300 Malus domestica HOM05D004235 ORTHO05D005157 1.2e-208 729.9 431 84.0
TPR.G25478 Trifolium pratense HOM05D004235 ORTHO05D005157 4.6e-208 728.0 431 83.3
Ca_17388_v3 Cicer arietinum L. HOM05D004235 ORTHO05D005157 6.0e-208 727.6 431 83.1
CSS0043888 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 1.3e-207 726.5 427 84.5
CiPaw.03G220000 Carya illinoinensis HOM05D004235 ORTHO05D005157 1.8e-207 726.1 431 84.0
Gohir.D05G029800 Gossypium hirsutum HOM05D004235 ORTHO05D005157 1.8e-207 726.1 429 83.2
Manes.16G105300 Manihot esculenta HOM05D004235 ORTHO05D005157 2.5e-206 722.2 429 83.7
TWI34G1426 Tripterygium wilfordii HOM05D004235 ORTHO05D005157 4.3e-206 721.5 429 83.0
GSVIVG01015250001 Vitis vinifera HOM05D004235 ORTHO05D005157 4.3e-206 721.5 431 83.3
Hma1.2p1_1074F.1_g254400 Hydrangea macrophylla HOM05D004235 ORTHO05D005157 5.6e-206 721.1 431 82.8
Psat7g019200 Pisum sativum HOM05D004235 ORTHO05D005157 5.6e-206 721.1 431 82.6
Glyma.08G030800 Glycine max HOM05D004235 ORTHO05D005157 1.6e-205 719.5 431 81.7
Glyma.05G223700 Glycine max HOM05D004235 ORTHO05D005157 3.1e-204 715.3 431 81.4
PGSC0003DMG402000346 Solanum tuberosum HOM05D004235 ORTHO05D005157 4.0e-204 714.9 431 82.1
VMungo0251G2139 Vigna mungo HOM05D004235 ORTHO05D005157 5.3e-204 714.5 431 81.2
Peaxi162Scf00498g00032 Petunia axillaris HOM05D004235 ORTHO05D005157 6.9e-204 714.1 431 82.4
THA.LOC104817747 Tarenaya hassleriana HOM05D004235 ORTHO05D005157 1.2e-203 713.4 429 81.4
CAN.G1241.9 Capsicum annuum HOM05D004235 ORTHO05D005157 2.0e-203 712.6 431 81.7
Rhsim03G0234900 Rhododendron simsii HOM05D004235 ORTHO05D005157 2.0e-203 712.6 431 81.4
Nitab4.5_0003781g0020 Nicotiana tabacum HOM05D004235 ORTHO05D005157 3.4e-203 711.8 431 81.9
Nitab4.5_0000540g0150 Nicotiana tabacum HOM05D004235 ORTHO05D005157 4.5e-203 711.4 431 82.4
arahy.Tifrunner.gnm1.ann1.00M5T5 Arachis hypogaea HOM05D004235 ORTHO05D005157 5.8e-203 711.1 431 79.6
RcHm_v2.0_Chr2g0092561 Rosa chinensis HOM05D004235 ORTHO05D005157 5.8e-203 711.1 429 81.4
arahy.Tifrunner.gnm1.ann1.VZDV7L Arachis hypogaea HOM05D004235 ORTHO05D005157 1.7e-202 709.5 431 79.1
CANSAT56G3324 Cannabis sativa HOM05D004235 ORTHO05D005157 2.2e-202 709.1 431 81.2
Solyc12g008710.2 Solanum lycopersicum HOM05D004235 ORTHO05D005157 2.9e-202 708.8 431 81.4
Prupe.7G214900 Prunus persica HOM05D004235 ORTHO05D005157 3.8e-202 708.4 431 81.2
Sopen12g003640 Solanum pennellii HOM05D004235 ORTHO05D005157 3.8e-202 708.4 431 81.4
FAN28G2658 Fragaria x ananassa HOM05D004235 ORTHO05D005157 3.2e-201 705.3 431 80.3
FvH4_1g06790 Fragaria vesca HOM05D004235 ORTHO05D005157 4.2e-201 704.9 431 80.5
FAN19G3193 Fragaria x ananassa HOM05D004235 ORTHO05D005157 5.5e-201 704.5 431 80.3
FAN26G0912 Fragaria x ananassa HOM05D004235 ORTHO05D005157 5.5e-201 704.5 431 80.0
Lj4g0008017 Lotus japonicus HOM05D004235 ORTHO05D005157 1.2e-200 703.4 431 80.7
AT5G56730 Arabidopsis thaliana HOM05D004235 ORTHO05D005157 2.7e-200 702.2 440 77.5
Carub.0008s1721 Capsella rubella HOM05D004235 ORTHO05D005157 2.7e-200 702.2 440 77.5
FAN23G1406 Fragaria x ananassa HOM05D004235 ORTHO05D005157 3.5e-200 701.8 431 80.0
AL8G32560 Arabidopsis lyrata HOM05D004235 ORTHO05D005157 6.0e-200 701.0 440 77.0
DCAR_028630 Daucus carota HOM05D004235 ORTHO05D005157 6.0e-200 701.0 431 79.4
FAN26G2547 Fragaria x ananassa HOM05D004235 ORTHO05D005157 6.0e-200 701.0 431 79.8
BcaB08g36065 Brassica carinata HOM05D004235 ORTHO05D005157 2.3e-199 699.1 440 76.1
BcaC04g20058 Brassica carinata HOM05D004235 ORTHO05D005157 3.0e-199 698.7 440 76.4
BolC9t57680H Brassica oleracea HOM05D004235 ORTHO05D005157 3.0e-199 698.7 440 76.4
A10p14070 Brassica napus HOM05D004235 ORTHO05D005157 8.7e-199 697.2 440 76.1
CARHR270480 Cardamine hirsuta HOM05D004235 ORTHO05D005157 8.7e-199 697.2 440 76.8
vmacro06271 Vaccinium macrocarpon HOM05D004235 ORTHO05D005157 1.1e-198 696.8 453 77.5
BraA10t43498Z Brassica rapa HOM05D004235 ORTHO05D005157 1.5e-198 696.4 440 76.1
Cc06_g10940 Coffea canephora HOM05D004235 ORTHO05D005157 1.5e-198 696.4 431 81.0
CsaV3_2G001610 Cucumis sativus L. HOM05D004235 ORTHO05D005157 4.3e-198 694.9 431 81.0
Sp6g18480 Schrenkiella parvula HOM05D004235 ORTHO05D005157 4.3e-198 694.9 440 77.3
C09p48300 Brassica napus HOM05D004235 ORTHO05D005157 5.7e-198 694.5 440 75.9
THA.LOC104811734 Tarenaya hassleriana HOM05D004235 ORTHO05D005157 4.8e-197 691.4 429 79.3
Aa31LG3G12550 Aethionema arabicum HOM05D004235 ORTHO05D005157 6.3e-197 691.0 440 77.3
ClCG11G001880 Citrullus lanatus HOM05D004235 ORTHO05D005157 8.2e-197 690.6 431 80.5
COL.COLO4_18249 Corchorus olitorius HOM05D004235 ORTHO05D005157 1.1e-196 690.3 429 80.9
MELO3C004614.2 Cucumis melo HOM05D004235 ORTHO05D005157 1.8e-196 689.5 431 80.5
Nn8g38947 Nelumbo nucifera HOM05D004235 ORTHO05D005157 3.4e-195 685.3 432 78.2
Sed0001781 Sechium edule HOM05D004235 ORTHO05D005157 4.5e-195 684.9 431 79.4
TAR383G0914 Trochodendron aralioides HOM05D004235 ORTHO05D005157 2.9e-194 682.2 431 78.7
PSO832G0536 Papaver somniferum HOM05D004235 ORTHO05D005157 3.8e-194 681.8 431 78.0
PSO063G2511 Papaver somniferum HOM05D004235 ORTHO05D005157 5.0e-194 681.4 431 77.7
TWI63G1589 Tripterygium wilfordii HOM05D004235 ORTHO05D005157 6.5e-194 681.0 429 80.2
SGA_v2.0_scaffold62G21574 Striga asiatica HOM05D004235 ORTHO05D005157 9.3e-193 677.2 431 77.7
Aqoxy7G01320 Aquilegia oxysepala HOM05D004235 ORTHO05D005157 4.6e-192 674.9 431 76.3
HanXRQChr04g0112481 Helianthus annuus HOM05D004235 ORTHO05D005157 4.6e-192 674.9 431 77.7
Oeu052124.2 Olea europaea HOM05D004235 ORTHO05D005157 7.9e-192 674.1 439 77.4
Migut.J00436 Erythranthe guttata HOM05D004235 ORTHO05D005157 1.0e-191 673.7 431 76.6
Lsat_1_v5_gn_8_88100 Lactuca sativa HOM05D004235 ORTHO05D005157 1.3e-191 673.3 431 77.7
Eucgr.C03689 Eucalyptus grandis HOM05D004235 ORTHO05D005157 1.5e-190 669.8 431 76.8
Ciclev10010146m.g Citrus clementina HOM05D004235 ORTHO05D005157 2.5e-190 669.1 429 77.9
Sc04g0004610 Simmondsia chinensis HOM05D004235 ORTHO05D005157 9.7e-190 667.2 431 76.6
ECA236G4919 Erigeron canadensis HOM05D004235 ORTHO05D005157 1.3e-189 666.8 431 75.9
Thecc.09G094600 Theobroma cacao HOM05D004235 ORTHO05D005157 2.2e-189 666.0 429 76.9
Phvul.002G305500 Phaseolus vulgaris HOM05D004235 ORTHO05D005157 2.8e-189 665.6 404 80.7
PGR102G2758 Punica granatum HOM05D004235 ORTHO05D005157 9.1e-188 660.6 431 75.6
Thecc.09G094500 Theobroma cacao HOM05D004235 ORTHO05D005157 1.7e-186 656.4 429 76.0
Hund06688 Selenicereus undatus HOM05D004235 ORTHO05D005157 2.9e-186 655.6 431 74.9
ATR0789G124 Amborella trichopoda HOM05D004235 ORTHO05D005157 6.5e-186 654.4 432 74.5
Duzib168G1665 Durio zibethinus HOM05D004235 ORTHO05D005157 8.5e-186 654.1 429 75.8
unitig_26.g9162 Utricularia gibba HOM05D004235 ORTHO05D005157 4.2e-185 651.7 431 74.9
Thhalv10012682m.g Eutrema salsugineum HOM05D004235 ORTHO05D005157 9.4e-185 650.6 427 74.0
Duzib150G0514 Durio zibethinus HOM05D004235 ORTHO05D005157 1.8e-183 646.4 429 74.6
Gohir.D08G265400 Gossypium hirsutum HOM05D004235 ORTHO05D005157 1.1e-182 643.7 429 74.1
Gohir.A08G244500 Gossypium hirsutum HOM05D004235 ORTHO05D005157 1.5e-182 643.3 429 74.1
Gorai.004G283400 Gossypium raimondii HOM05D004235 ORTHO05D005157 1.5e-182 643.3 429 74.1
EL10Ac8g19244 Beta vulgaris HOM05D004235 ORTHO05D005157 4.1e-180 635.2 431 72.4
HPP92_009154 Vanilla planifolia HOM05D004235 ORTHO05D005157 1.2e-179 633.6 432 71.5
AUR62034005 Chenopodium quinoa HOM05D004235 ORTHO05D005157 3.8e-178 628.6 431 71.7
AUR62027475 Chenopodium quinoa HOM05D004235 ORTHO05D005157 1.4e-177 626.7 431 71.2
Medtr8g101950 Medicago truncatula HOM05D004235 ORTHO05D005157 5.2e-175 618.2 431 73.5
CSS0008185 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 6.7e-175 617.8 436 73.2
COL.COLO4_18247 Corchorus olitorius HOM05D004235 ORTHO05D005157 6.7e-167 591.3 429 67.8
CSS0028903 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 1.0e-159 567.4 381 76.4
SMO268G0025 Selaginella moellendorffii HOM05D004235 ORTHO05D005157 2.0e-158 563.1 434 62.4
Migut.J00437 Erythranthe guttata HOM05D004235 ORTHO05D005157 2.6e-158 562.8 429 66.0
Mapoly0007s0115 Marchantia polymorpha HOM05D004235 ORTHO05D005157 1.7e-154 550.1 434 62.4
Lalb_Chr09g0331751 Lupinus albus HOM05D004235 ORTHO05D005157 1.5e-153 547.0 385 73.2
COL.COLO4_18244 Corchorus olitorius HOM05D004235 ORTHO05D005157 1.8e-151 540.0 444 62.2
Pp3c19_10200 Physcomitrium patens HOM05D004235 ORTHO05D005157 2.3e-151 539.7 434 62.4
Zm00001eb162240 Zea mays HOM05D004235 ORTHO05D005157 2.0e-150 536.6 372 72.0
Sc18g0001680 Simmondsia chinensis HOM05D004235 ORTHO05D005157 7.8e-147 524.6 431 60.8
Ah.09g230260 Amaranthus hybridus HOM05D004235 ORTHO05D005157 1.5e-137 493.8 431 58.5
EL10Ac8g18336 Beta vulgaris HOM05D004235 ORTHO05D005157 1.9e-137 493.4 431 59.2
Os01g0558850 Oryza sativa ssp. japonica HOM05D004235 ORTHO05D005157 2.5e-137 493.0 347 70.6
AUR62021351 Chenopodium quinoa HOM05D004235 ORTHO05D005157 5.8e-134 481.9 432 59.0
AUR62033265 Chenopodium quinoa HOM05D004235 ORTHO05D005157 1.3e-133 480.7 432 58.6
Hund09051 Selenicereus undatus HOM05D004235 ORTHO05D005157 2.7e-131 473.0 438 58.0
CBR_g39508 Chara braunii HOM05D004235 ORTHO05D005157 5.6e-129 465.3 442 53.4
Sc18g0001660 Simmondsia chinensis HOM05D004235 ORTHO05D005157 1.2e-128 464.2 431 55.5
SalBow6G3097 Salvia bowleyana HOM05D004235 ORTHO05D005157 5.8e-110 402.1 253 79.1
Aa31LG3G12670 Aethionema arabicum HOM05D004235 ORTHO05D005157 6.0e-99 365.5 228 78.1
COL.COLO4_18245 Corchorus olitorius HOM05D004235 ORTHO05D005157 4.8e-96 355.9 444 46.8
RcHm_v2.0_Chr2g0091881 Rosa chinensis HOM05D004235 ORTHO05D005157 3.9e-90 336.3 277 65.3
COL.COLO4_18248 Corchorus olitorius HOM05D004235 ORTHO05D005157 5.6e-89 332.4 254 67.7
SEGI_08113 Sequoiadendron giganteum HOM05D004235 ORTHO05D005157 3.8e-85 319.7 224 70.1
MCO05G244 Micromonas commoda HOM05D004235 ORTHO05D005157 2.0e-78 297.4 435 36.8
Pp3c22_21190 Physcomitrium patens HOM05D004235 ORTHO05D005157 7.9e-75 285.4 434 40.3
Aa31LG3G12660 Aethionema arabicum HOM05D004235 ORTHO05D005157 5.2e-58 229.6 190 63.7
CSS0031019 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 2.5e-52 210.7 126 82.5
SEGI_40851 Sequoiadendron giganteum HOM05D004235 ORTHO05D005157 3.6e-43 180.3 133 60.9
PGSC0003DMG400037643 Solanum tuberosum HOM05D004235 ORTHO05D005157 1.5e-36 158.3 395 29.9
MBI12_g34172_MAGBIO Magnolia biondii HOM05D004235 ORTHO05D005157 2.5e-36 157.5 127 63.8
C02p28510 Brassica napus HOM05D004235 ORTHO05D005157 1.6e-30 138.3 95 69.5
BolC2t08892H Brassica oleracea HOM05D004235 ORTHO05D005157 1.6e-30 138.3 95 69.5
BcaC03g15257 Brassica carinata HOM05D004235 ORTHO05D005157 7.8e-30 136.0 79 79.7
HanXRQChr07g0193421 Helianthus annuus HOM05D004235 ORTHO05D005157 3.3e-28 130.6 96 69.8
MBI12_g07780_MAGBIO Magnolia biondii HOM05D004235 ORTHO05D005157 4.3e-28 130.2 93 67.7
Aa31LG3G12610 Aethionema arabicum HOM05D004235 ORTHO05D005157 2.0e-22 111.3 68 77.9
Aa31LG3G12570 Aethionema arabicum HOM05D004235 ORTHO05D005157 1.3e-21 108.6 66 78.8
RcHm_v2.0_Chr2g0091891 Rosa chinensis HOM05D004235 ORTHO05D005157 1.2e-19 102.1 53 92.5
Cpa.g.sc78.62 Carica papaya HOM05D004235 ORTHO05D005157 2.1e-19 101.3 49 98.0
MBI14_g38886_MAGBIO Magnolia biondii HOM05D004235 ORTHO05D005157 8.3e-16 89.4 49 81.6
MBI14_g45694_MAGBIO Magnolia biondii HOM05D004235 ORTHO05D005157 3.9e-13 80.5 47 80.9
MBI14_g11330_MAGBIO Magnolia biondii HOM05D004235 ORTHO05D005157 5.1e-13 80.1 47 78.7
SEGI_18611 Sequoiadendron giganteum HOM05D004235 ORTHO05D005157 4.3e-12 77.0 62 56.5
RcHm_v2.0_Chr6g0274801 Rosa chinensis HOM05D004235 ORTHO05D026109 1.2e-09 68.9 50 66.0
Sed0011503 Sechium edule HOM05D003632 ORTHO05D005497 1.2e-09 68.9 443 21.7
CsaV3_2G009400 Cucumis sativus L. HOM05D003632 ORTHO05D005497 2.0e-09 68.2 442 21.0
MELO3C008771.2 Cucumis melo HOM05D003632 ORTHO05D005497 1.3e-08 65.5 443 20.8
Glyma.14G085000 Glycine max HOM05D004702 ORTHO05D005505 8.3e-08 62.8 89 44.9
CAN.G2827.2 Capsicum annuum HOM05D003632 ORTHO05D005497 2.4e-07 61.2 443 19.6
CAN.G843.30 Capsicum annuum HOM05D003632 ORTHO05D005497 3.2e-07 60.8 443 19.4
Lalb_Chr09g0331731 Lupinus albus HOM05D004235 ORTHO05D005157 3.2e-07 60.8 48 62.5
Psat2g189160 Pisum sativum HOM05D003632 ORTHO05D005497 7.1e-07 59.7 442 20.6
Solyc03g118430.3 Solanum lycopersicum HOM05D003632 ORTHO05D005497 7.1e-07 59.7 443 19.2
VMungo1215G1560 Vigna mungo HOM05D003632 ORTHO05D005497 7.1e-07 59.7 438 21.0
Pp3c16_2100 Physcomitrium patens HOM05D003632 ORTHO05D005497 1.2e-06 58.9 165 24.2
Sopen03g037320 Solanum pennellii HOM05D003632 ORTHO05D005497 1.6e-06 58.5 443 19.0
Glyma.01G233300 Glycine max HOM05D003632 ORTHO05D005497 2.7e-06 57.8 478 20.7
TAR381G0543 Trochodendron aralioides HOM05D003632 ORTHO05D005497 6.0e-06 56.6 363 20.4
Oeu052121.2 Olea europaea HOM05D000101 ORTHO05D000089 7.8e-06 56.2 50 52.0


User provided reference genes

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