Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc23.98 Carica papaya HOM05D004541 ORTHO05D006163 0.0e+00 2195.2 1071 100.0
Manes.16G115100 Manihot esculenta HOM05D004541 ORTHO05D006163 0.0e+00 1583.5 1051 75.4
Duzib187G1831 Durio zibethinus HOM05D004541 ORTHO05D006163 0.0e+00 1568.9 1042 75.0
COL.COLO4_34849 Corchorus olitorius HOM05D004541 ORTHO05D006163 0.0e+00 1565.4 1058 73.5
Gorai.009G025200 Gossypium raimondii HOM05D004541 ORTHO05D006163 0.0e+00 1555.0 1059 72.8
Ciclev10007326m.g Citrus clementina HOM05D004541 ORTHO05D006163 0.0e+00 1552.7 1052 73.0
Gohir.A05G023600 Gossypium hirsutum HOM05D004541 ORTHO05D006163 0.0e+00 1549.6 1059 72.6
Gorai.004G280300 Gossypium raimondii HOM05D004541 ORTHO05D006163 0.0e+00 1548.5 1061 73.3
Atru.chr7.1362 Acer truncatum HOM05D004541 ORTHO05D006163 0.0e+00 1545.0 1051 73.6
Dinv41612 Davidia involucrata HOM05D004541 ORTHO05D006163 0.0e+00 1535.8 1060 72.5
CiPaw.03G231000 Carya illinoinensis HOM05D004541 ORTHO05D006163 0.0e+00 1531.2 1061 72.2
Actinidia07413 Actinidia chinensis HOM05D004541 ORTHO05D006163 0.0e+00 1530.8 1054 72.7
TAR383G1084 Trochodendron aralioides HOM05D004541 ORTHO05D006163 0.0e+00 1527.3 1070 71.5
CANSAT56G2738 Cannabis sativa HOM05D004541 ORTHO05D006163 0.0e+00 1522.7 1044 73.1
CANSAT56G4378 Cannabis sativa HOM05D004541 ORTHO05D006163 0.0e+00 1520.4 1044 73.0
Gohir.D05G025100 Gossypium hirsutum HOM05D004541 ORTHO05D006163 0.0e+00 1516.9 1059 71.7
Potri.018G081400 Populus trichocarpa HOM05D004541 ORTHO05D006163 0.0e+00 1515.0 1040 73.5
Prupe.7G232300 Prunus persica HOM05D004541 ORTHO05D006163 0.0e+00 1515.0 1008 73.9
QL02p040000 Quercus lobata HOM05D004541 ORTHO05D006163 0.0e+00 1510.7 1041 73.4
Eucgr.C03820 Eucalyptus grandis HOM05D004541 ORTHO05D006163 0.0e+00 1509.6 1020 73.6
THA.LOC104804980 Tarenaya hassleriana HOM05D004541 ORTHO05D006163 0.0e+00 1506.9 1035 72.8
CSS0034093 Camellia sinensis var. sinensis HOM05D004541 ORTHO05D006163 0.0e+00 1502.6 1066 70.8
TWI34G1287 Tripterygium wilfordii HOM05D004541 ORTHO05D006163 0.0e+00 1501.9 1049 70.8
CSS0021602 Camellia sinensis var. sinensis HOM05D004541 ORTHO05D006163 0.0e+00 1501.5 1064 70.9
Thhalv10012541m.g Eutrema salsugineum HOM05D004541 ORTHO05D006163 0.0e+00 1500.7 1043 72.0
Duzib168G0462 Durio zibethinus HOM05D004541 ORTHO05D006163 0.0e+00 1497.6 1060 70.8
Sabra18G0068500 Salix brachista HOM05D004541 ORTHO05D006163 0.0e+00 1496.9 1054 72.2
Sp6g24730 Schrenkiella parvula HOM05D004541 ORTHO05D006163 0.0e+00 1492.2 1047 71.6
ClCG06G008600 Citrullus lanatus HOM05D004541 ORTHO05D006163 0.0e+00 1491.5 1054 71.2
vmacro06222 Vaccinium macrocarpon HOM05D004541 ORTHO05D006163 0.0e+00 1489.2 1050 71.0
PGR102G1372 Punica granatum HOM05D004541 ORTHO05D006163 0.0e+00 1487.6 1046 71.4
Glyma.07G085500 Glycine max HOM05D004541 ORTHO05D006163 0.0e+00 1484.5 1039 71.6
Ca_20226_v3 Cicer arietinum L. HOM05D004541 ORTHO05D006163 0.0e+00 1483.8 1021 71.6
MD15G1183900 Malus domestica HOM05D004541 ORTHO05D006163 0.0e+00 1483.8 1023 72.0
Lj2g0016785 Lotus japonicus HOM05D004541 ORTHO05D006163 0.0e+00 1479.9 1027 71.8
Phvul.004G164500 Phaseolus vulgaris HOM05D004541 ORTHO05D006163 0.0e+00 1477.2 1017 71.6
AT5G19660 Arabidopsis thaliana HOM05D004541 ORTHO05D006163 0.0e+00 1476.5 1044 71.0
Carub.0006s1801 Capsella rubella HOM05D004541 ORTHO05D006163 0.0e+00 1475.3 1039 70.6
MELO3C025349.2 Cucumis melo HOM05D004541 ORTHO05D006163 0.0e+00 1475.3 1057 70.7
Rhsim03G0241000 Rhododendron simsii HOM05D004541 ORTHO05D006163 0.0e+00 1472.2 1081 69.1
Sed0019002 Sechium edule HOM05D004541 ORTHO05D006163 0.0e+00 1471.4 1052 70.4
AL6G31170 Arabidopsis lyrata HOM05D004541 ORTHO05D006163 0.0e+00 1470.3 1047 70.4
TPR.G10041 Trifolium pratense HOM05D004541 ORTHO05D006163 0.0e+00 1468.8 1026 71.2
C03p11140 Brassica napus HOM05D004541 ORTHO05D006163 0.0e+00 1467.2 1034 71.5
FAN19G1993 Fragaria x ananassa HOM05D004541 ORTHO05D006163 0.0e+00 1466.8 1034 70.5
Psat1g043400 Pisum sativum HOM05D004541 ORTHO05D006163 0.0e+00 1466.1 1019 71.9
Lj7A652G69 Lonicera japonica HOM05D004541 ORTHO05D006163 0.0e+00 1465.3 993 72.4
BolC3t13584H Brassica oleracea HOM05D004541 ORTHO05D006163 0.0e+00 1464.5 1034 71.3
FAN23G1653 Fragaria x ananassa HOM05D004541 ORTHO05D006163 0.0e+00 1463.7 1052 69.7
Aa31LG3G3200 Aethionema arabicum HOM05D004541 ORTHO05D006163 0.0e+00 1461.4 1057 69.7
Medtr6g087520 Medicago truncatula HOM05D004541 ORTHO05D006163 0.0e+00 1461.4 1017 70.9
BraA03t10274Z Brassica rapa HOM05D004541 ORTHO05D006163 0.0e+00 1460.3 1040 71.8
VMungo0464G1118 Vigna mungo HOM05D004541 ORTHO05D006163 0.0e+00 1460.3 1044 69.7
RcHm_v2.0_Chr2g0090281 Rosa chinensis HOM05D004541 ORTHO05D006163 0.0e+00 1459.5 1008 71.7
Lalb_Chr09g0331191 Lupinus albus HOM05D004541 ORTHO05D006163 0.0e+00 1458.7 1052 69.4
A03p09570 Brassica napus HOM05D004541 ORTHO05D006163 0.0e+00 1457.6 1034 71.5
CAN.G608.21 Capsicum annuum HOM05D004541 ORTHO05D006163 0.0e+00 1456.4 1054 69.2
Solyc09g007300.3 Solanum lycopersicum HOM05D004541 ORTHO05D006163 0.0e+00 1451.8 1068 68.1
Cc06_g09760 Coffea canephora HOM05D004541 ORTHO05D006163 0.0e+00 1451.4 1066 67.9
MD02G1045500 Malus domestica HOM05D004541 ORTHO05D006163 0.0e+00 1441.4 963 73.8
Sc18g0001290 Simmondsia chinensis HOM05D004541 ORTHO05D006163 0.0e+00 1435.2 1040 69.1
MBI01_g28040_MAGBIO Magnolia biondii HOM05D004541 ORTHO05D006163 0.0e+00 1433.7 1048 69.0
Oeu018244.1 Olea europaea HOM05D004541 ORTHO05D006163 0.0e+00 1429.8 1060 67.7
Dinv36641 Davidia involucrata HOM05D004541 ORTHO05D006163 0.0e+00 1426.4 1031 70.8
EL10Ac8g18481 Beta vulgaris HOM05D004541 ORTHO05D006163 0.0e+00 1426.0 1042 68.7
Aqoxy7G01635 Aquilegia oxysepala HOM05D004541 ORTHO05D006163 0.0e+00 1424.1 1055 68.7
ECA234G1988 Erigeron canadensis HOM05D004541 ORTHO05D006163 0.0e+00 1423.7 1050 67.9
Hund26211 Selenicereus undatus HOM05D004541 ORTHO05D006163 0.0e+00 1421.0 1048 67.4
DCAR_024689 Daucus carota HOM05D004541 ORTHO05D006163 0.0e+00 1419.1 1052 68.2
PSO210G2419 Papaver somniferum HOM05D004541 ORTHO05D006163 0.0e+00 1418.7 1058 67.3
PSO210G5975 Papaver somniferum HOM05D004541 ORTHO05D006163 0.0e+00 1417.5 1058 67.2
Gohir.D05G025033 Gossypium hirsutum HOM05D004541 ORTHO05D006163 0.0e+00 1413.3 1029 69.7
Lsat_1_v5_gn_5_103081 Lactuca sativa HOM05D004541 ORTHO05D006163 0.0e+00 1411.4 1054 68.1
Migut.J01157 Erythranthe guttata HOM05D004541 ORTHO05D006163 0.0e+00 1411.0 1000 69.8
FAN26G2455 Fragaria x ananassa HOM05D004541 ORTHO05D006163 0.0e+00 1411.0 1016 69.6
HanXRQChr10g0318611 Helianthus annuus HOM05D004541 ORTHO05D006163 0.0e+00 1409.0 1025 68.0
Peaxi162Scf00005g04811 Petunia axillaris HOM05D004541 ORTHO05D006163 0.0e+00 1407.5 1005 69.9
unitig_8.g3279 Utricularia gibba HOM05D004541 ORTHO05D006163 0.0e+00 1404.4 1042 66.2
SGA_v2.0_scaffold17G08177 Striga asiatica HOM05D004541 ORTHO05D006163 0.0e+00 1388.2 1043 67.7
SHI02736 Sapria himalayana HOM05D004541 ORTHO05D006163 0.0e+00 1378.6 1037 66.1
GSVIVG01015382001 Vitis vinifera HOM05D004541 ORTHO05D006163 0.0e+00 1359.7 871 76.9
Nitab4.5_0000754g0130 Nicotiana tabacum HOM05D004541 ORTHO05D006163 0.0e+00 1336.6 996 66.1
ATR0315G070 Amborella trichopoda HOM05D004541 ORTHO05D006163 0.0e+00 1332.8 1096 62.6
VMungo0464G1847 Vigna mungo HOM05D004541 ORTHO05D006163 0.0e+00 1322.4 1037 65.2
AUR62010981 Chenopodium quinoa HOM05D004541 ORTHO05D006163 0.0e+00 1310.0 894 72.1
CDE05G1732 Ceratophyllum demersum HOM05D004541 ORTHO05D006163 0.0e+00 1301.6 1019 63.8
Lsat_1_v5_gn_8_105101 Lactuca sativa HOM05D004541 ORTHO05D006163 0.0e+00 1285.0 1031 62.8
AUR62021490 Chenopodium quinoa HOM05D004541 ORTHO05D006163 0.0e+00 1284.6 950 68.5
BcaB01g04837 Brassica carinata HOM05D004541 ORTHO05D006163 0.0e+00 1279.6 859 74.0
HPP92_003938 Vanilla planifolia HOM05D004541 ORTHO05D006163 0.0e+00 1278.5 960 65.7
Nn8g39153 Nelumbo nucifera HOM05D004541 ORTHO05D006163 0.0e+00 1268.8 915 69.7
Haze_25754 Corylus avellana HOM05D004541 ORTHO05D006163 0.0e+00 1267.7 1025 64.4
CARHR193250 Cardamine hirsuta HOM05D004541 ORTHO05D006163 0.0e+00 1231.9 826 74.1
Thecc.09G109100 Theobroma cacao HOM05D004541 ORTHO05D006163 0.0e+00 1220.3 785 76.8
Gohir.A08G241500 Gossypium hirsutum HOM05D004541 ORTHO05D006163 0.0e+00 1179.1 785 75.0
Gohir.D08G262300 Gossypium hirsutum HOM05D004541 ORTHO05D006163 0.0e+00 1173.7 785 74.8
Glyma.09G191400 Glycine max HOM05D004541 ORTHO05D006163 0.0e+00 1162.9 770 73.8
CsaV3_1G024300 Cucumis sativus L. HOM05D004541 ORTHO05D006163 0.0e+00 1151.7 776 72.9
FvH4_1g04670 Fragaria vesca HOM05D004541 ORTHO05D006163 0.0e+00 1147.5 785 72.0
Nitab4.5_0007565g0030 Nicotiana tabacum HOM05D004541 ORTHO05D006163 0.0e+00 1137.1 774 71.8
Mapoly0155s0018 Marchantia polymorpha HOM05D004541 ORTHO05D006163 0.0e+00 1114.8 966 58.3
SMO347G0168 Selaginella moellendorffii HOM05D004541 ORTHO05D006163 0.0e+00 1091.3 897 59.5
Nitab4.5_0001142g0040 Nicotiana tabacum HOM05D004541 ORTHO05D006163 0.0e+00 1080.9 748 71.7
CAN.G933.11 Capsicum annuum HOM05D004541 ORTHO05D006163 7.3e-312 1074.7 841 64.4
Sopen00g009260 Solanum pennellii HOM05D004541 ORTHO05D006163 9.5e-302 1040.4 617 79.3
Nitab4.5_0006929g0020 Nicotiana tabacum HOM05D004541 ORTHO05D006163 2.6e-299 1032.3 989 55.9
Pp3c3_30280 Physcomitrium patens HOM05D004541 ORTHO05D006163 2.0e-296 1022.7 858 59.0
Ah.14g082120 Amaranthus hybridus HOM05D004541 ORTHO05D006163 1.0e-295 1020.4 648 76.1
AagrBONN_evm.TU.Sc2ySwM_344.4490 Anthoceros agrestis HOM05D004541 ORTHO05D006163 4.1e-281 971.8 839 57.9
SEGI_41546 Sequoiadendron giganteum HOM05D004541 ORTHO05D006163 3.2e-273 945.7 745 63.9
CSS0043571 Camellia sinensis var. sinensis HOM05D004541 ORTHO05D006163 5.3e-260 901.7 648 69.9
Os06g0163500 Oryza sativa ssp. japonica HOM05D004541 ORTHO05D006163 2.6e-259 899.4 643 66.1
PGSC0003DMG400017594 Solanum tuberosum HOM05D004541 ORTHO05D006163 6.7e-247 858.2 875 53.6
SEGI_28317 Sequoiadendron giganteum HOM05D004541 ORTHO05D006163 1.2e-243 847.4 555 72.1
MCO08G100 Micromonas commoda HOM05D004541 ORTHO05D006163 2.6e-222 776.5 893 47.4
Zm00001eb375700 Zea mays HOM05D004541 ORTHO05D006163 2.8e-221 773.1 565 63.5
PRCOL_00005929 Prasinoderma coloniale HOM05D004541 ORTHO05D006163 1.6e-211 740.7 885 45.0
Cre14.g628800 Chlamydomonas reinhardtii HOM05D004541 ORTHO05D006163 2.9e-210 736.5 783 48.0
Medtr6g086780 Medicago truncatula HOM05D004541 ORTHO05D006163 1.4e-191 674.5 490 68.2
CAN.G268.4 Capsicum annuum HOM05D004541 ORTHO05D006163 2.8e-168 597.0 456 67.1
Ah.14g082140 Amaranthus hybridus HOM05D004541 ORTHO05D006163 5.0e-109 400.2 309 66.7
Gorai.006G096000 Gossypium raimondii HOM05D004541 ORTHO05D006163 4.8e-104 383.6 325 63.7
Gohir.A12G025200 Gossypium hirsutum HOM05D004541 ORTHO05D006163 2.1e-99 368.2 315 63.2
Gohir.A10G147200 Gossypium hirsutum HOM05D004541 ORTHO05D006163 1.8e-98 365.2 315 63.2
Gohir.A06G119402 Gossypium hirsutum HOM05D004541 ORTHO05D006163 3.9e-98 364.0 315 62.9
Gohir.D09G033000 Gossypium hirsutum HOM05D004541 ORTHO05D006163 3.9e-98 364.0 315 62.9
Gohir.A08G250201 Gossypium hirsutum HOM05D004541 ORTHO05D006163 6.7e-98 363.2 315 62.9
Gohir.D04G083366 Gossypium hirsutum HOM05D004541 ORTHO05D006163 3.8e-93 347.4 309 61.8
Haze_25735 Corylus avellana HOM05D004541 ORTHO05D006163 4.7e-83 313.9 298 59.1
Actinidia32680 Actinidia chinensis HOM05D004541 ORTHO05D006163 1.6e-78 298.9 162 90.1
Sopen00g009180 Solanum pennellii HOM05D004541 ORTHO05D006163 4.5e-70 270.8 134 94.8
Gohir.D07G157100 Gossypium hirsutum HOM05D004541 ORTHO05D006163 9.5e-68 263.1 245 60.0
SGA_v2.0_scaffold176G39378 Striga asiatica HOM05D004541 ORTHO05D006163 1.4e-63 249.2 195 63.1
Nitab4.5_0000754g0080 Nicotiana tabacum HOM05D004541 ORTHO05D006163 3.6e-51 208.0 574 29.6
CBR_g30873 Chara braunii HOM05D004541 ORTHO05D000800 4.0e-50 204.5 280 40.7
BolC9t58517H Brassica oleracea HOM05D004541 ORTHO05D006163 7.1e-47 193.7 144 67.4
MBI04_g39576_MAGBIO Magnolia biondii HOM05D004541 ORTHO05D006163 9.2e-47 193.4 124 78.2
CBR_g30877 Chara braunii HOM05D004541 ORTHO05D000002 1.5e-44 186.0 126 65.1
Lj3g0016708 Lotus japonicus HOM05D004541 ORTHO05D006163 4.0e-42 177.9 91 91.2
C09p56520 Brassica napus HOM05D004541 ORTHO05D006163 9.9e-41 173.3 130 67.7
BcaC04g19361 Brassica carinata HOM05D002433 ORTHO05D003234 7.8e-38 163.7 126 65.9
Lsat_1_v5_gn_5_96741 Lactuca sativa HOM05D004541 ORTHO05D006163 6.9e-34 150.6 92 77.2
CBR_g30889 Chara braunii HOM05D001523 ORTHO05D000184 3.4e-33 148.3 152 48.0
CAN.G933.10 Capsicum annuum HOM05D004541 ORTHO05D006163 3.8e-32 144.8 140 51.4
Sopen00g011810 Solanum pennellii HOM05D004541 ORTHO05D006163 8.4e-32 143.7 206 43.7
BcaB01g04836 Brassica carinata HOM05D004541 ORTHO05D006163 1.9e-28 132.5 118 57.6
SEGI_08862 Sequoiadendron giganteum HOM05D004541 ORTHO05D006163 1.3e-21 109.8 94 52.1
Haze_25737 Corylus avellana HOM05D004541 ORTHO05D006163 3.2e-15 88.6 219 34.7
Cpa.g.sc197.15 Carica papaya HOM05D000003 ORTHO05D000004 1.1e-12 80.1 74 40.5
Pp3s169_40 Physcomitrium patens HOM05D004541 ORTHO05D012764 5.7e-12 77.8 170 34.1
Cpa.g.sc170.60 Carica papaya HOM05D003223 ORTHO05D004865 3.7e-11 75.1 71 45.1
Cpa.g.sc54.24 Carica papaya HOM05D000003 ORTHO05D000004 4.8e-11 74.7 69 49.3
Cpa.g.sc108.17 Carica papaya HOM05D001165 ORTHO05D000004 1.2e-09 70.1 73 42.5
Aa31LG3G3160 Aethionema arabicum HOM05D004541 ORTHO05D058835 3.4e-09 68.6 163 34.4
Cpa.g.sc129.32 Carica papaya HOM05D002219 ORTHO05D002713 1.0e-08 67.0 111 35.1
Cpa.g.sc82.29 Carica papaya HOM05D006517 ORTHO05D007886 1.0e-08 67.0 51 58.8
Cpa.g.sc2.104 Carica papaya HOM05D000003 ORTHO05D000004 3.8e-08 65.1 50 56.0
CBR_g30886 Chara braunii HOM05D000019 ORTHO05D000353 3.8e-08 65.1 34 76.5
Cpa.g.sc8.13 Carica papaya HOM05D000625 ORTHO05D000467 5.0e-08 64.7 81 40.7
Cpa.g.sc34.220 Carica papaya HOM05D000003 ORTHO05D000004 6.5e-08 64.3 43 69.8
Cpa.g.sc11.107 Carica papaya HOM05D001594 ORTHO05D002862 1.9e-07 62.8 64 51.6
A10p20060 Brassica napus HOM05D004541 ORTHO05D006163 1.6e-06 59.7 28 92.9


User provided reference genes

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