Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc23.79 Carica papaya HOM05D005514 ORTHO05D006563 9.2e-206 719.9 349 100.0
Thecc.09G107100 Theobroma cacao HOM05D005514 ORTHO05D006563 9.8e-107 391.0 380 56.8
Ciclev10008655m.g Citrus clementina HOM05D005514 ORTHO05D006563 9.2e-105 384.4 393 55.0
CiPaw.03G229100 Carya illinoinensis HOM05D005514 ORTHO05D006563 5.0e-103 378.6 378 54.2
Atru.chr7.1371 Acer truncatum HOM05D005514 ORTHO05D006563 1.1e-102 377.5 394 55.6
AUR62010955 Chenopodium quinoa HOM05D005514 ORTHO05D006563 4.3e-102 375.6 379 55.1
Gohir.D08G262600 Gossypium hirsutum HOM05D005514 ORTHO05D006563 1.2e-101 374.0 381 54.6
MD02G1042900 Malus domestica HOM05D005514 ORTHO05D006563 8.1e-101 371.3 384 55.7
Duzib150G0489 Durio zibethinus HOM05D005514 ORTHO05D006563 1.4e-100 370.5 378 55.6
Sabra06G0124000 Salix brachista HOM05D005514 ORTHO05D006563 4.4e-99 365.5 375 53.3
CiPaw.04G162600 Carya illinoinensis HOM05D005514 ORTHO05D006563 5.8e-99 365.2 382 54.5
QL02p045925 Quercus lobata HOM05D005514 ORTHO05D006563 8.3e-98 361.3 417 49.6
Gorai.004G280600 Gossypium raimondii HOM05D005514 ORTHO05D006563 2.4e-97 359.8 381 54.1
Gohir.A08G241800 Gossypium hirsutum HOM05D005514 ORTHO05D006563 2.3e-95 353.2 381 53.3
Duzib168G0165 Durio zibethinus HOM05D005514 ORTHO05D006563 1.5e-94 350.5 381 54.9
Eucgr.C01267 Eucalyptus grandis HOM05D005514 ORTHO05D006563 1.1e-92 344.4 381 52.2
Potri.006G160500 Populus trichocarpa HOM05D005514 ORTHO05D006563 1.3e-90 337.4 375 50.9
Hma1.2p1_1151F.1_g261950 Hydrangea macrophylla HOM05D005514 ORTHO05D006563 2.9e-90 336.3 374 53.2
CANSAT02G0006 Cannabis sativa HOM05D005514 ORTHO05D006563 1.1e-89 334.3 376 50.3
EL10Ac8g18440 Beta vulgaris HOM05D005514 ORTHO05D006563 3.2e-89 332.8 383 50.9
MELO3C024688.2 Cucumis melo HOM05D005514 ORTHO05D006563 4.1e-89 332.4 392 49.2
CsaV3_1G045730 Cucumis sativus L. HOM05D005514 ORTHO05D006563 4.1e-89 332.4 392 48.7
RcHm_v2.0_Chr2g0089981 Rosa chinensis HOM05D005514 ORTHO05D006563 2.1e-88 330.1 378 50.8
CAN.G148.5 Capsicum annuum HOM05D005514 ORTHO05D006563 1.1e-86 324.3 370 51.1
Ca_25539_v3 Cicer arietinum L. HOM05D005514 ORTHO05D006563 1.1e-86 324.3 386 51.0
CSS0000167 Camellia sinensis var. sinensis HOM05D005514 ORTHO05D006563 2.5e-86 323.2 262 62.2
Nitab4.5_0000010g0010 Nicotiana tabacum HOM05D005514 ORTHO05D006563 1.2e-85 320.9 382 48.7
Manes.03G023100 Manihot esculenta HOM05D005514 ORTHO05D006563 2.8e-85 319.7 245 64.9
Dinv36656 Davidia involucrata HOM05D005514 ORTHO05D006563 1.2e-83 314.3 245 62.4
Peaxi162Scf00031g00232 Petunia axillaris HOM05D005514 ORTHO05D006563 1.2e-83 314.3 359 50.1
Phvul.004G165700 Phaseolus vulgaris HOM05D005514 ORTHO05D006563 7.6e-83 311.6 374 49.2
Oeu002248.1 Olea europaea HOM05D005514 ORTHO05D006563 2.2e-82 310.1 405 48.1
Cfa003235 Carpinus fangiana HOM05D005514 ORTHO05D006563 3.8e-82 309.3 254 62.6
Prupe.7G234000 Prunus persica HOM05D005514 ORTHO05D006563 8.4e-82 308.1 251 62.5
Nitab4.5_0000952g0010 Nicotiana tabacum HOM05D005514 ORTHO05D006563 5.4e-81 305.4 398 46.2
Ah.07g205470 Amaranthus hybridus HOM05D005514 ORTHO05D006563 3.5e-80 302.8 374 48.1
AUR62021464 Chenopodium quinoa HOM05D005514 ORTHO05D006563 3.5e-80 302.8 382 48.7
Medtr6g087890 Medicago truncatula HOM05D005514 ORTHO05D006563 6.0e-80 302.0 378 50.8
Cc06_g09930 Coffea canephora HOM05D005514 ORTHO05D006563 1.0e-79 301.2 238 65.1
Hund09218 Selenicereus undatus HOM05D005514 ORTHO05D006563 2.3e-79 300.1 436 45.6
FAN26G2817 Fragaria x ananassa HOM05D005514 ORTHO05D006563 1.1e-78 297.7 256 58.6
ClCG06G008760 Citrullus lanatus HOM05D005514 ORTHO05D006563 2.5e-78 296.6 266 57.1
FvH4_1g04330 Fragaria vesca HOM05D005514 ORTHO05D006563 4.3e-78 295.8 334 50.0
Potri.018G083100 Populus trichocarpa HOM05D005514 ORTHO05D006563 5.6e-78 295.4 384 47.4
Psat1g044240 Pisum sativum HOM05D005514 ORTHO05D006563 1.6e-77 293.9 399 47.4
Lalb_Chr24g0397401 Lupinus albus HOM05D005514 ORTHO05D006563 4.8e-77 292.4 255 60.4
FAN23G0542 Fragaria x ananassa HOM05D005514 ORTHO05D006563 8.1e-77 291.6 256 58.2
Lalb_Chr22g0352701 Lupinus albus HOM05D005514 ORTHO05D006563 3.1e-76 289.7 376 47.9
Dinv41624 Davidia involucrata HOM05D005514 ORTHO05D006563 5.3e-76 288.9 251 59.0
Glyma.09G192400 Glycine max HOM05D005514 ORTHO05D006563 5.3e-76 288.9 359 47.4
arahy.Tifrunner.gnm1.ann1.LW2ZPS Arachis hypogaea HOM05D005514 ORTHO05D006563 4.5e-75 285.8 252 58.3
FAN19G0406 Fragaria x ananassa HOM05D005514 ORTHO05D006563 7.6e-75 285.0 256 57.4
Glyma.07G084500 Glycine max HOM05D005514 ORTHO05D006563 7.6e-75 285.0 327 51.1
VMungo0464G0467 Vigna mungo HOM05D005514 ORTHO05D006563 7.6e-75 285.0 254 57.9
arahy.Tifrunner.gnm1.ann1.7WD3SA Arachis hypogaea HOM05D005514 ORTHO05D006563 2.9e-74 283.1 252 57.9
MD15G1181700 Malus domestica HOM05D005514 ORTHO05D006563 2.9e-74 283.1 254 57.1
vmacro06229 Vaccinium macrocarpon HOM05D005514 ORTHO05D006563 2.9e-74 283.1 264 58.0
TPR.G10049 Trifolium pratense HOM05D005514 ORTHO05D006563 6.4e-74 282.0 412 44.4
Haze_25771 Corylus avellana HOM05D005514 ORTHO05D006563 1.1e-73 281.2 233 62.7
Nn2g11677 Nelumbo nucifera HOM05D005514 ORTHO05D006563 1.1e-73 281.2 398 46.5
Actinidia32673 Actinidia chinensis HOM05D005514 ORTHO05D006563 2.4e-73 280.0 348 51.1
Sed0015833 Sechium edule HOM05D005514 ORTHO05D006563 1.0e-71 274.6 386 46.4
MSTRG.10624 Avicennia marina HOM05D005514 ORTHO05D006563 2.5e-70 270.0 369 50.1
Solyc05g018340.4 Solanum lycopersicum HOM05D005514 ORTHO05D006563 9.6e-70 268.1 363 46.6
Sopen05g015140 Solanum pennellii HOM05D005514 ORTHO05D006563 9.6e-70 268.1 363 46.6
TWI23G1143 Tripterygium wilfordii HOM05D005514 ORTHO05D006563 2.8e-69 266.5 361 46.0
Lalb_Chr14g0371621 Lupinus albus HOM05D005514 ORTHO05D006563 4.8e-69 265.8 254 57.5
Sed0026603 Sechium edule HOM05D005514 ORTHO05D006563 2.4e-68 263.5 454 39.2
Sc18g0001310 Simmondsia chinensis HOM05D005514 ORTHO05D006563 2.6e-67 260.0 374 48.1
Lj2g0026530 Lotus japonicus HOM05D005514 ORTHO05D006563 2.9e-66 256.5 426 41.8
Actinidia07405 Actinidia chinensis HOM05D005514 ORTHO05D006563 6.4e-66 255.4 380 45.3
TAR383G0343 Trochodendron aralioides HOM05D001777 ORTHO05D001809 2.4e-65 253.4 358 45.3
ECA234G0189 Erigeron canadensis HOM05D005514 ORTHO05D006563 2.7e-64 250.0 400 43.0
HanXRQChr10g0318661 Helianthus annuus HOM05D005514 ORTHO05D006563 7.9e-64 248.4 404 45.5
THA.LOC104820053 Tarenaya hassleriana HOM05D005514 ORTHO05D006563 1.9e-62 243.8 390 43.6
Oeu064593.1 Olea europaea HOM05D005514 ORTHO05D006563 1.6e-61 240.7 278 49.6
MBI14_g08031_MAGBIO Magnolia biondii HOM05D005514 ORTHO05D006563 2.0e-59 233.8 267 50.2
PGSC0003DMG400027426 Solanum tuberosum HOM05D005514 ORTHO05D006563 2.0e-59 233.8 231 54.1
THA.LOC104804022 Tarenaya hassleriana HOM05D005514 ORTHO05D006563 5.8e-59 232.3 387 44.2
PGR142G2557 Punica granatum HOM05D005514 ORTHO05D006563 6.5e-58 228.8 373 43.2
MBI04_g19180_MAGBIO Magnolia biondii HOM05D005514 ORTHO05D006563 2.5e-57 226.9 267 49.4
Rhsim03G0240000 Rhododendron simsii HOM05D005514 ORTHO05D006563 4.2e-57 226.1 226 57.5
MSTRG.26360 Avicennia marina HOM05D005514 ORTHO05D006563 3.9e-55 219.5 238 52.1
Sabra18G0070900 Salix brachista HOM05D005514 ORTHO05D006563 3.3e-54 216.5 200 54.5
PSO782G4531 Papaver somniferum HOM05D005514 ORTHO05D006563 4.3e-54 216.1 234 55.6
Sp7g26930 Schrenkiella parvula HOM05D005514 ORTHO05D006563 4.3e-54 216.1 384 40.1
Aqoxy7G01583 Aquilegia oxysepala HOM05D005514 ORTHO05D006563 7.4e-54 215.3 250 51.2
DCAR_028696 Daucus carota HOM05D005514 ORTHO05D006563 9.7e-54 214.9 411 37.7
COL.COLO4_34823 Corchorus olitorius HOM05D005514 ORTHO05D006563 3.1e-52 209.9 249 46.2
TAR624G0612 Trochodendron aralioides HOM05D005514 ORTHO05D006563 4.1e-52 209.5 216 54.6
AL7G23470 Arabidopsis lyrata HOM05D005514 ORTHO05D006563 2.2e-50 203.8 397 38.8
PSO566G0157 Papaver somniferum HOM05D005514 ORTHO05D006563 3.8e-50 203.0 264 50.0
AT4G28990 Arabidopsis thaliana HOM05D005514 ORTHO05D006563 3.6e-48 196.4 397 38.5
Thhalv10025603m.g Eutrema salsugineum HOM05D005514 ORTHO05D006563 1.5e-46 191.0 401 38.9
SEGI_01979 Sequoiadendron giganteum HOM05D005514 ORTHO05D006563 3.3e-46 189.9 264 45.5
CARHR236720 Cardamine hirsuta HOM05D005514 ORTHO05D006563 3.7e-45 186.4 397 38.3
Lsat_1_v5_gn_5_102941 Lactuca sativa HOM05D005514 ORTHO05D006563 8.2e-45 185.3 238 50.8
Carub.0007s1165 Capsella rubella HOM05D005514 ORTHO05D006563 1.0e-42 178.3 405 37.8
Aa31LG8G17060 Aethionema arabicum HOM05D005514 ORTHO05D006563 2.9e-42 176.8 266 45.1
BcaNung01339 Brassica carinata HOM05D005514 ORTHO05D006563 1.1e-38 164.9 387 37.2
Migut.K00501 Erythranthe guttata HOM05D005514 ORTHO05D006563 4.4e-38 162.9 364 40.1
BcaNung00443 Brassica carinata HOM05D005514 ORTHO05D006563 4.8e-37 159.5 367 36.8
ATR0315G038 Amborella trichopoda HOM05D005514 ORTHO05D006563 8.2e-37 158.7 267 41.2
A01p08990 Brassica napus HOM05D001777 ORTHO05D006510 1.4e-36 157.9 373 36.5
Lj7A655G38 Lonicera japonica HOM05D005514 ORTHO05D006563 9.1e-36 155.2 175 48.6
BolC1t01016H Brassica oleracea HOM05D001777 ORTHO05D006510 1.2e-35 154.8 382 36.1
C01p10530 Brassica napus HOM05D001777 ORTHO05D006510 2.6e-35 153.7 370 35.9
GSVIVG01015362001 Vitis vinifera HOM05D005514 ORTHO05D006563 1.3e-34 151.4 343 33.5
CDE05G1480 Ceratophyllum demersum HOM05D005514 ORTHO05D006563 6.5e-34 149.1 230 41.3
Zm00001eb147430 Zea mays HOM05D005514 ORTHO05D006563 3.2e-33 146.7 263 40.3
Os06g0332900 Oryza sativa ssp. japonica HOM05D005514 ORTHO05D006563 1.5e-30 137.9 254 38.2
BcaC09g51675 Brassica carinata HOM05D005514 ORTHO05D006563 1.6e-27 127.9 363 33.6
CDE05G2615 Ceratophyllum demersum HOM05D005514 ORTHO05D006563 2.6e-27 127.1 347 30.8
Os02g0274700 Oryza sativa ssp. japonica HOM05D005514 ORTHO05D006563 1.3e-26 124.8 222 38.7
BcaNung00440 Brassica carinata HOM05D005514 ORTHO05D006563 3.8e-26 123.2 285 38.6
Nn3g18098 Nelumbo nucifera HOM05D005514 ORTHO05D006563 1.9e-25 120.9 192 41.1
BraA03t14917Z Brassica rapa HOM05D005514 ORTHO05D006563 3.2e-25 120.2 237 39.2
BcaNung02893 Brassica carinata HOM05D005514 ORTHO05D006563 9.4e-25 118.6 366 33.3
C07p56560 Brassica napus HOM05D005514 ORTHO05D006563 9.4e-25 118.6 366 33.3
HPP92_000517 Vanilla planifolia HOM05D005514 ORTHO05D006563 9.4e-25 118.6 245 38.0
Mapoly0001s0121 Marchantia polymorpha HOM05D005514 ORTHO05D006563 1.6e-24 117.9 258 38.0
Pp3c14_23580 Physcomitrium patens HOM05D005514 ORTHO05D006563 3.6e-24 116.7 268 35.4
BolC7t46134H Brassica oleracea HOM05D005514 ORTHO05D006563 2.6e-22 110.5 382 31.7
SEGI_18875 Sequoiadendron giganteum HOM05D005514 ORTHO05D006563 4.4e-22 109.8 247 36.0
unitig_0.g2554 Utricularia gibba HOM05D005514 ORTHO05D006563 8.0e-16 89.0 307 33.2
SMO169G0168 Selaginella moellendorffii HOM05D005514 ORTHO05D006563 2.2e-13 80.9 228 32.5
MD15G1181500 Malus domestica HOM05D005514 ORTHO05D006563 6.3e-13 79.3 69 56.5
SGA_v2.0_scaffold92G28280 Striga asiatica HOM05D005514 ORTHO05D006563 6.3e-13 79.3 104 51.0
AagrBONN_evm.TU.Sc2ySwM_344.197 Anthoceros agrestis HOM05D005514 ORTHO05D006563 2.4e-12 77.4 89 48.3
CBR_g44542 Chara braunii HOM05D005514 ORTHO05D006563 1.6e-11 74.7 242 32.6
COL.COLO4_34822 Corchorus olitorius HOM05D005514 ORTHO05D006563 2.3e-10 70.9 86 54.7
SMO116G0230 Selaginella moellendorffii HOM05D005514 ORTHO05D006563 8.6e-10 68.9 37 75.7
Oeu064594.1 Olea europaea HOM05D005514 ORTHO05D006563 1.2e-08 65.1 66 60.6
Lsat_1_v5_gn_5_102961 Lactuca sativa HOM05D005514 ORTHO05D006563 2.8e-08 63.9 66 54.5
Cc06_g09940 Coffea canephora HOM05D005514 ORTHO05D006563 7.5e-06 55.8 72 55.6


User provided reference genes

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